These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_556#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence [AAGTAAGAGCATGTTCCGTGTTTTTGTGCAGCAGAATTGTTTCATAAAAGGAGTTACAGGACTTAAGTGTAGATCCTCCAACCCAGCGTTCAGCTGGACCTATTCACGATGATCGTAAGTTCATATTTGTTTGTCCTGGTTTACATTTAGTATTTGCCTGGCAAGCCACTATTATGGGACCTGTATGTTCGTTTATTCTGTCATAATATACCCGTAGGCTGATAGTCCATATGAAGGTGGAGTCTTTTCCCTGAAAATACTATTTCCCACAGATTATCCTTTCAAACCCCCTAAGATCAGTTTCATGACGAAGATATATCATCCGAATATAAATCCCAGTGG] [+] EMBL CD180609 [AAGTAAGAGCATGTTCCGTGTTTTTGTGCAGCAGAATTGTTTCATAAAAGGAGTTACAGGACTTAAGTGTAGATCCTCCAACCCAGCGTTCAGCTGGACCTATTCACGATGATCGTAAGTTCATATTTGTTTGTCCTGGTTTACATTTAGTATTTGCCTGGCAAGCCACTATTATGGGACCTGTATGTTCGTTTATTCTGTCATAATATACCCGTAGGCTGATAGTCCATATGAAGGTGGAGTCTTTTCCCTGAAAATACTATTTCCCACAGATTATCCTTTCAAACCCCCTAAGATCAGTTTCATGACGAAGATATATCATCCGAATATAAATCCCAGTGG] consensusID : consensus_556#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 251 fasta sequence [GTTTAAATGGCTATCATACTAAACAGTAATAGTTTTTAAAAAAGATGGATGGAACTAAAAAGAAAAATGATTGCAATGAAAATTAGAGAAAGAGAATGCTATGGAAAGAGCAGTACAATATGAAGAATTACTTAAAAAGAAAGAAGAAGAACGTGAAAAACGTGAAAGTGAAATTGCTGAATTAAAATAAAAAAAATGAAACAAGCCCAAATTGAATTGTGATGAAGCACAAGAAAACATTACAAGAACAA] [+] EMBL CD171418 [GTTTAAATGGCTATCATACTAAACAGTAATAGTTTTTAAAAAAGATGGATGGAACTAAAAAGAAAAATGATTGCAATGAAAATTAGAGAAAGAGAATGCTATGGAAAGAGCAGTACAATATGAAGAATTACTTAAAAAGAAAGAAGAAGAACGTGAAAAACGTGAAAGTGAAATTGCTGAATTAAAATAAAAAAAATGAAACAAGCCCAAATTGAATTGTGATGAAGCACAAGAAAACATTACAAGAACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_556#0 AAGTAAGAGCATGTTCCGTGTTTTTGTGCAGCAGAATTGTTTCATAAAAGGAGTTACAGG 60 consensus_556#1 ------------------------------------------------------------ consensus_556#0 ACTTAAGTGTAGATCCTCCAACCCAGCGTTCAGCTGGACCTATTCACGATGATCGTAAGT 120 consensus_556#1 GTTTAAATGGCTATCATACTAAACAGTAAT-AGTT---TTTAAAAAAGATGGATGGAACT 56 **** ** *** * * * *** * ** * ** * **** * ** * consensus_556#0 TCATATTTGTTTGTCCTGGTTTACATTTAGTATTTGCCTGGCAAGCCACTATTATGGGAC 180 consensus_556#1 AAAAAGAAAAAT------GATTGCAATGAAAATTAGAGAAAGAGAATGCTATGGAAAGAG 110 * * * * ** ** * * *** * * **** ** consensus_556#0 CTGTATGTT-CGTTTATTCTGTCATAATATACCCGTAGGCTGATAGTCCATATGAAGGTG 239 consensus_556#1 CAGTACAATATGAAGAATTACTTAAAAAGAAAGAAGAAGAACGTGAAAAACGTGAAAGTG 170 * *** * * * * * * ** * * * * * **** *** consensus_556#0 GAGTCTTTTCCCTGAAAATACTATTTCCCACAGATTATCCTTTCAAACCCCCTAAGATCA 299 consensus_556#1 AAATTGCTGAATTAAAATAAAAA------AAATGAAACAAGCCCAAAT----TGAATTGT 220 * * * * *** * * * * * **** * * * consensus_556#0 GTTTCATGACGAAGATATATCATCCGAATATAAATCCCAGTGG 342 consensus_556#1 GATGAAGCACAAGAAAACATTACAAGAACAA------------ 251 * * * ** * * * ** * *** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||