cluster # 5562

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Schistosoma mansoni
cluster # 5562 cluster # 5562 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5562#0 length = 474 sequences # 2

consensus_5562#1 length = 408 sequences # 1

consensusID : consensus_5562#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 474
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTAAAAAATAAATCATTTTTATATTAAGTTTAAAACTTTTTTTTGAAAAATGTGATCATAAAAAACGAAATATGTGCTAAACTTATATGTAATAAAATGAATACATACATTATACAAAGTAATAGGTAGGAAGTCTTTATAAGAGAAAAAGAGAATAAAAAAGAAAGTAACAGAGACAACAGCTGTATCTAAACAAATAATCAGGAATGAAAATAAAGTACATATATATCTATTATATGAGGAACTGCATCGGGAAACATTTTCGACTGTTCATTGATAATACTATTACATGAATTGAAAAGAAAAATGAGTAGAATTTCACTCATTTCCACTAAAACAATGTGATAAGACAATGCATTAAGTTGAACCAATCTACAAACATGAATAAAGACGAGATATATGAGGAGAAATTATTCCATTTTACTAAGGGAACTTTATACGATTTAACGAATGTGT]

[+] EMBL AI395845             [TTTTTTTTTTTTTTTTTTTTAAAAAATAAATCATTTTTATATTAAGTTTAAAACTTTTTTTTGAAAAATGTGATCATAAAAAACGAAATATGTGCTAAACTTATATGTAATAAAATGAATACATACATTATACAAAGTAATAGGTAGGAAGTCTTTATAAGAGAAAAAGAGAATAAAAAAGAAAGTAACAGAGACAACAGCTGTATCTAAACAAATAATCAGGAATGAAAATAAAGTACATATATATCTATTATATGAGGAACTGCATCGGGA                                                                                                                                                                                                         ]
[+] EMBL AI394784             [    TTTTTTTTTTTTTTTTAATAAATAAATCATTTTTATATTAAGTTTAAAACTTTTTTTTGAAAAATGTGATCATAAAAAACGAAATATGTGCTAAACTTATATGTAATAAAATGAATACATACATTATACAAAGTAATAGGTAGGAAGTCTTTATNAGAGAAAAAGAGAATANAAAAGAAAGTAACAGAGACAACAGCTGTATCTAAACAAATAATCAGGAATGAAAATAAAGTACATATATATCTATTATATGAGGAACTGCATCGGTAAACATTTTCGACTGTTCATTGATAATACTATTACATGAATTGAAAAGAAAAATGAGTAGAATTTCACTCATTTCCACTAAAACAATGTGATAAGACAATGCATTAAGTTGAACCAATCTACAAACATGAATAAAGACGAGATATATGAGGAGAAATTATTCCATTTTACTAAGGGAACTTTATACGATTTAACGAATGTGT]




>consensus_5562#0
TTTTTTTTTTTTTTTTTTTTAAAAAATAAATCATTTTTATATTAAGTTTAAAACTTTTTT
TTGAAAAATGTGATCATAAAAAACGAAATATGTGCTAAACTTATATGTAATAAAATGAAT
ACATACATTATACAAAGTAATAGGTAGGAAGTCTTTATAAGAGAAAAAGAGAATAAAAAA
GAAAGTAACAGAGACAACAGCTGTATCTAAACAAATAATCAGGAATGAAAATAAAGTACA
TATATATCTATTATATGAGGAACTGCATCGGGAAACATTTTCGACTGTTCATTGATAATA
CTATTACATGAATTGAAAAGAAAAATGAGTAGAATTTCACTCATTTCCACTAAAACAATG
TGATAAGACAATGCATTAAGTTGAACCAATCTACAAACATGAATAAAGACGAGATATATG
AGGAGAAATTATTCCATTTTACTAAGGGAACTTTATACGATTTAACGAATGTGT

consensusID : consensus_5562#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 408
fasta sequence

                              [TTTTTTTTTTTTTTTTATATTAAGTTTAAAACTTTTTTTTGAAAAATGTGATCATAAAAAACGAAATATGTGCTAAACTTATATGTAATAAAATGAATACATACATTATACAAAGTAATAGGTAGGAAGTCTTTATAAGAGAAAAAGAGAATAAAAAAGAAAGTAACAGAGACAACAGCTGTATCTAAACAAATAATCAGGAATGAAAATAAAGTACATATATATCTATTATATGAGGAACTGCATCGGTAAACATTTTCGACTGTTCATTGATAATACTATTACATGAATTGAAAAGAAAAATGAGTAGAATTCACTCAATTCCACTAAAACAATGTGATAAGACAATGCATTAAGTTGGAACAATCTACAAACATGAATAAAGACGAGATATATGAGGACGAAATT]

[+] EMBL AI395745             [TTTTTTTTTTTTTTTTATATTAAGTTTAAAACTTTTTTTTGAAAAATGTGATCATAAAAAACGAAATATGTGCTAAACTTATATGTAATAAAATGAATACATACATTATACAAAGTAATAGGTAGGAAGTCTTTATAAGAGAAAAAGAGAATAAAAAAGAAAGTAACAGAGACAACAGCTGTATCTAAACAAATAATCAGGAATGAAAATAAAGTACATATATATCTATTATATGAGGAACTGCATCGGTAAACATTTTCGACTGTTCATTGATAATACTATTACATGAATTGAAAAGAAAAATGAGTAGAATTCACTCAATTCCACTAAAACAATGTGATAAGACAATGCATTAAGTTGGAACAATCTACAAACATGAATAAAGACGAGATATATGAGGACGAAATT]




>consensus_5562#1
TTTTTTTTTTTTTTTTATATTAAGTTTAAAACTTTTTTTTGAAAAATGTGATCATAAAAA
ACGAAATATGTGCTAAACTTATATGTAATAAAATGAATACATACATTATACAAAGTAATA
GGTAGGAAGTCTTTATAAGAGAAAAAGAGAATAAAAAAGAAAGTAACAGAGACAACAGCT
GTATCTAAACAAATAATCAGGAATGAAAATAAAGTACATATATATCTATTATATGAGGAA
CTGCATCGGTAAACATTTTCGACTGTTCATTGATAATACTATTACATGAATTGAAAAGAA
AAATGAGTAGAATTCACTCAATTCCACTAAAACAATGTGATAAGACAATGCATTAAGTTG
GAACAATCTACAAACATGAATAAAGACGAGATATATGAGGACGAAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5562#0      TTTTTTTTTTTTTTTTTTTTAAAAAATAAATCATTTTTATATTAAGTTTAAAACTTTTTT 60
consensus_5562#1      ---------TTTTTTTTTTT-------------TTTTTATATTAAGTTTAAAACTTTTTT 38
                               ***********             ***************************

consensus_5562#0      TTGAAAAATGTGATCATAAAAAACGAAATATGTGCTAAACTTATATGTAATAAAATGAAT 120
consensus_5562#1      TTGAAAAATGTGATCATAAAAAACGAAATATGTGCTAAACTTATATGTAATAAAATGAAT 98
                      ************************************************************

consensus_5562#0      ACATACATTATACAAAGTAATAGGTAGGAAGTCTTTATAAGAGAAAAAGAGAATAAAAAA 180
consensus_5562#1      ACATACATTATACAAAGTAATAGGTAGGAAGTCTTTATAAGAGAAAAAGAGAATAAAAAA 158
                      ************************************************************

consensus_5562#0      GAAAGTAACAGAGACAACAGCTGTATCTAAACAAATAATCAGGAATGAAAATAAAGTACA 240
consensus_5562#1      GAAAGTAACAGAGACAACAGCTGTATCTAAACAAATAATCAGGAATGAAAATAAAGTACA 218
                      ************************************************************

consensus_5562#0      TATATATCTATTATATGAGGAACTGCATCGGGAAACATTTTCGACTGTTCATTGATAATA 300
consensus_5562#1      TATATATCTATTATATGAGGAACTGCATCGGTAAACATTTTCGACTGTTCATTGATAATA 278
                      ******************************* ****************************

consensus_5562#0      CTATTACATGAATTGAAAAGAAAAATGAGTAGAATTTCACTCATTTCCACTAAAACAATG 360
consensus_5562#1      CTATTACATGAATTGAAAAGAAAAATGAGTAGAATT-CACTCAATTCCACTAAAACAATG 337
                      ************************************ ****** ****************

consensus_5562#0      TGATAAGACAATGCATTAAGTTGAACCAATCTACAAACATGAATAAAGACGAGATATATG 420
consensus_5562#1      TGATAAGACAATGCATTAAGTTGGAACAATCTACAAACATGAATAAAGACGAGATATATG 397
                      *********************** * **********************************

consensus_5562#0      AGGA-GAAATTATTCCATTTTACTAAGGGAACTTTATACGATTTAACGAATGTGT 474
consensus_5562#1      AGGACGAAATT-------------------------------------------- 408
                      **** ******