cluster # 5563

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Schistosoma mansoni
cluster # 5563 cluster # 5563 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5563#0 length = 504 sequences # 2

consensus_5563#1 length = 449 sequences # 1

consensusID : consensus_5563#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 504
fasta sequence

                              [ATGACGGTGGCGAATCCGATACTGATTTCGAGGGCAGATTAGAATTGTGGTCTCCTGTGAAGCAAGAAAATTGACTCTTTCCATCAATAATTTTCGAAACAGCACGATTATCAGTTGACATAACTTTACTGCAACGCCTACTGCAGGTATTTACAAAATTAAAACTCCCGGAGTGTTTTTTTTTGTGGTACATTAAAATGGACTCTCTTCGGAGAGATGAAGATGCTTGAGAGGAAATCCATGTAGTAAGGCGAGTTGAACGCCGTGTTGGTTTAGGAAACAATACACAGGATTCAGCGGATTCAAAATCCAATATAGATGAACTTGAGTCACCTTCAGAACACAGGCTATCTGATGATTCTGTGCTTACCAGTTCCTGGTTAGATTGGACAGATTTAGCCGACGATGACTCTTGTTTACCAGACGAATTAGCACTAGAATTTTTACAGTCTACAGTCAAGTTTGTTATTTTCCGCTTCTTTGTTCTTCGTACCATCTCATGAG]

[+] EMBL CD180574             [ATGACGGTGGCGAATCCGATACTGATTTCGAGGGCAGATTAGAATTGTGGTCTCCTGTGAAGCAAGAAAATTGACTCTTTCCATCAATAATTTTCGAAACAGCACGATTATCAGTTGACATAACTTTACTGCAACGCCTACTGCAGGTATTTACAAAATTAAAACTCCCGGAGTGTTTTTTTTTGTGGTACATTAAAATGGACTCTCTTCGGAGAGATGAAGATGCTTGAGAGGAAATCCATGTAGTAAGGCGAGTTGAACGCCGTGTTGGTTTAGGAAACAATACACAGGATTCAGCGGATTCAAAATCCAATATAGATGAACTTGAGTCACCTTCAGAACACAGGCTATCTGATGATTCTGTGCTTACCAGTTCCTGGTTAGATTGGACAGATTTAGCCGACGATGACTCTTGTTTACCAGACGAATTAGCACTAGAATTTTTACAGTCTACAGTCAAGTTTGTTATTTTCCGCTTCTTTGTTCTTCGTACCATCTCATGAG]
[+] EMBL CD195494             [                                                                                                                            TTTACTGCAACGCCTACTGCAGTTATTTACAAAATTAAAACTCCCGGAGTGTTTTTTTTTGTGGTACATTAAAATGGACTCTCTTCGGAGAGATGAAGATGCTTGAGAGGAAATCCATGTAGTAAGGCGAGTTGAACGCCGTGTTGGTTTAGGAAACAATACACAGGATTCAACGGATTCAAAATCCAATATAGATGAACTTGAGTCACCTTCAGAACACAGGCTATCTGATGATTCTGTGCTTACCAGTTCCTGGTTAGATTGGACAGATTTAGCCAACGATGACTCTTGTTTACCAGACGAATTAGCACTAGAATTTTTACAGTCTACAGTCAAGTNTGTTATTTTCCGCTTCTTTGTTCTTCGTA            ]




>consensus_5563#0
ATGACGGTGGCGAATCCGATACTGATTTCGAGGGCAGATTAGAATTGTGGTCTCCTGTGA
AGCAAGAAAATTGACTCTTTCCATCAATAATTTTCGAAACAGCACGATTATCAGTTGACA
TAACTTTACTGCAACGCCTACTGCAGGTATTTACAAAATTAAAACTCCCGGAGTGTTTTT
TTTTGTGGTACATTAAAATGGACTCTCTTCGGAGAGATGAAGATGCTTGAGAGGAAATCC
ATGTAGTAAGGCGAGTTGAACGCCGTGTTGGTTTAGGAAACAATACACAGGATTCAGCGG
ATTCAAAATCCAATATAGATGAACTTGAGTCACCTTCAGAACACAGGCTATCTGATGATT
CTGTGCTTACCAGTTCCTGGTTAGATTGGACAGATTTAGCCGACGATGACTCTTGTTTAC
CAGACGAATTAGCACTAGAATTTTTACAGTCTACAGTCAAGTTTGTTATTTTCCGCTTCT
TTGTTCTTCGTACCATCTCATGAG

consensusID : consensus_5563#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 449
fasta sequence

                              [AGAGACATATTTAAATGCAGTGTAGAATCCATGTTACAATTGTTATTATTGTTTAATAAACCATCTGAAAATAGCGGACCTTTTACATCAATTTCTAAAACGTTTTCTGTAGATTGCGATACAGAGTTTAAAGGGGGAGAAAAATTTCTAAAATTTTCATNACAATCTATTAGTATACAGCCAGCCGTATCAGANAGAGGGGATGAAGTATGTATNCTTGAAAGNCNAGTNTTTGTNAGTAGAGTTGGANTAAAAGATGNCGGTGGCGAATCCGATACTGANTTNNAGGGCAGNTTAGAANTGTGGTNTCCTGTGAAGCAAGAAAATTGACTCTTTCCATCAATAATTTTCGNANCAGCANNATNATCAGTTNACATATCTTNACTGCAACGCCTACTGCAGTNATTTACAAAATTAAAACTCCCGGAGTGTTTTTTTTNTGTGGGACA]

[-] EMBL BE431302             [AGAGACATATTTAAATGCAGTGTAGAATCCATGTTACAATTGTTATTATTGTTTAATAAACCATCTGAAAATAGCGGACCTTTTACATCAATTTCTAAAACGTTTTCTGTAGATTGCGATACAGAGTTTAAAGGGGGAGAAAAATTTCTAAAATTTTCATNACAATCTATTAGTATACAGCCAGCCGTATCAGANAGAGGGGATGAAGTATGTATNCTTGAAAGNCNAGTNTTTGTNAGTAGAGTTGGANTAAAAGATGNCGGTGGCGAATCCGATACTGANTTNNAGGGCAGNTTAGAANTGTGGTNTCCTGTGAAGCAAGAAAATTGACTCTTTCCATCAATAATTTTCGNANCAGCANNATNATCAGTTNACATATCTTNACTGCAACGCCTACTGCAGTNATTTACAAAATTAAAACTCCCGGAGTGTTTTTTTTNTGTGGGACA]




>consensus_5563#1
AGAGACATATTTAAATGCAGTGTAGAATCCATGTTACAATTGTTATTATTGTTTAATAAA
CCATCTGAAAATAGCGGACCTTTTACATCAATTTCTAAAACGTTTTCTGTAGATTGCGAT
ACAGAGTTTAAAGGGGGAGAAAAATTTCTAAAATTTTCATNACAATCTATTAGTATACAG
CCAGCCGTATCAGANAGAGGGGATGAAGTATGTATNCTTGAAAGNCNAGTNTTTGTNAGT
AGAGTTGGANTAAAAGATGNCGGTGGCGAATCCGATACTGANTTNNAGGGCAGNTTAGAA
NTGTGGTNTCCTGTGAAGCAAGAAAATTGACTCTTTCCATCAATAATTTTCGNANCAGCA
NNATNATCAGTTNACATATCTTNACTGCAACGCCTACTGCAGTNATTTACAAAATTAAAA
CTCCCGGAGTGTTTTTTTTNTGTGGGACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5563#0      ATGACGGTGGCGAATCCGATACTGATTTCGAGGGCAGATTAGAATTGTGGTCTCCTGTGA 60
consensus_5563#1      -----------------------------AGAGACATATTTAAAT-GCAGTGTAGAATCC 30
                                                      * ** ***  *** *  ** *    *  

consensus_5563#0      AGCAAGAAAATTGACTCTTTCCATCAATAATTT-TCGAAACAGCACGATTATCAGTTGAC 119
consensus_5563#1      A-TGTTACAATTGTTATTATTGTTTAATAAACCATCTGAAAATAGCGGACCT---TTTAC 86
                      *     * *****    * *   * *****    **  ** *   **    *   ** **

consensus_5563#0      ATAACTTTACTGCAACGCCTACTGCAGGTATT--TACAAAATTAAAACTCCCGGAGTGTT 177
consensus_5563#1      ATCAATTT-CTAAAACGTTTTCTGTAGATTGCGATACAGAGTTTAAAGGGGGAGAAAAAT 145
                      ** * *** **  ****  * *** ** *     **** * ** ***      **    *

consensus_5563#0      TTTTTTTGTGGTACATTAAAATGGACTCTCTTCGGAGAGATGAAGATGCTTGAGAGGAAA 237
consensus_5563#1      TTCTAAAATTTT-CATNACAAT-----CTATTAGTATACAGCCAGCCGTATCAGANAGAG 199
                      ** *    *  * *** * ***     ** ** * * * *   **  *  * ***   * 

consensus_5563#0      TCCATGTAGTAAGGCGAGTTGAACGCCGTGTTGGTTTAGGAAACAATACACAGGATTCAG 297
consensus_5563#1      GGGATGAAGTATGTATNCTTGAAAGNCNAGTNTTTGTNAGTAGAGTTGGANTAAAAGATG 259
                         *** **** *     ***** * *  **   * *  * *    *  *    *    *

consensus_5563#0      CGGATTCAAAATCCAATATAGATGAACTTGAGTCACCTTCAGAACACAGGCTATCTGATG 357
consensus_5563#1      NCGGTGGCGAATCCGATAC---TGANTTNNAGGGCAGNTTAGAAN-TGTGGTNTCCTGTG 315
                        * *    ***** ***    ***  *  **      * ****     * * **   **

consensus_5563#0      ATTCTGTGCTTACCAGTTCCTGGTTAGATTGGACAGATTTAGCCGACGATGACTCTTGTT 417
consensus_5563#1      AAGC-AAGAAAATTGACTCTT---TCCATCAATAATTTTCGNANCAGCANNATNATCAGT 371
                      *  *   *   *     ** *   *  **     *  **      *  *  *   *   *

consensus_5563#0      TACCAGACGAATTAGCACTAGAATTTTTACAGTCTACAGTCAAGTTTGTTATTTTCCGCT 477
consensus_5563#1      TNACATATCT-TNACTGCAACGCCTACTGCAGTN-ATTTACAAAATTAAAACTCCCGGAG 429
                      *  ** *    * *   * *    *  * ****  *    ***  **   * *  * *  

consensus_5563#0      TCTTTGTTCTTCGTACCATCTCATGAG 504
consensus_5563#1      TGTTTTTTTTNTGTGGGACA------- 449
                      * *** ** *  **   *