These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5563#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 504 fasta sequence [ATGACGGTGGCGAATCCGATACTGATTTCGAGGGCAGATTAGAATTGTGGTCTCCTGTGAAGCAAGAAAATTGACTCTTTCCATCAATAATTTTCGAAACAGCACGATTATCAGTTGACATAACTTTACTGCAACGCCTACTGCAGGTATTTACAAAATTAAAACTCCCGGAGTGTTTTTTTTTGTGGTACATTAAAATGGACTCTCTTCGGAGAGATGAAGATGCTTGAGAGGAAATCCATGTAGTAAGGCGAGTTGAACGCCGTGTTGGTTTAGGAAACAATACACAGGATTCAGCGGATTCAAAATCCAATATAGATGAACTTGAGTCACCTTCAGAACACAGGCTATCTGATGATTCTGTGCTTACCAGTTCCTGGTTAGATTGGACAGATTTAGCCGACGATGACTCTTGTTTACCAGACGAATTAGCACTAGAATTTTTACAGTCTACAGTCAAGTTTGTTATTTTCCGCTTCTTTGTTCTTCGTACCATCTCATGAG] [+] EMBL CD180574 [ATGACGGTGGCGAATCCGATACTGATTTCGAGGGCAGATTAGAATTGTGGTCTCCTGTGAAGCAAGAAAATTGACTCTTTCCATCAATAATTTTCGAAACAGCACGATTATCAGTTGACATAACTTTACTGCAACGCCTACTGCAGGTATTTACAAAATTAAAACTCCCGGAGTGTTTTTTTTTGTGGTACATTAAAATGGACTCTCTTCGGAGAGATGAAGATGCTTGAGAGGAAATCCATGTAGTAAGGCGAGTTGAACGCCGTGTTGGTTTAGGAAACAATACACAGGATTCAGCGGATTCAAAATCCAATATAGATGAACTTGAGTCACCTTCAGAACACAGGCTATCTGATGATTCTGTGCTTACCAGTTCCTGGTTAGATTGGACAGATTTAGCCGACGATGACTCTTGTTTACCAGACGAATTAGCACTAGAATTTTTACAGTCTACAGTCAAGTTTGTTATTTTCCGCTTCTTTGTTCTTCGTACCATCTCATGAG] [+] EMBL CD195494 [ TTTACTGCAACGCCTACTGCAGTTATTTACAAAATTAAAACTCCCGGAGTGTTTTTTTTTGTGGTACATTAAAATGGACTCTCTTCGGAGAGATGAAGATGCTTGAGAGGAAATCCATGTAGTAAGGCGAGTTGAACGCCGTGTTGGTTTAGGAAACAATACACAGGATTCAACGGATTCAAAATCCAATATAGATGAACTTGAGTCACCTTCAGAACACAGGCTATCTGATGATTCTGTGCTTACCAGTTCCTGGTTAGATTGGACAGATTTAGCCAACGATGACTCTTGTTTACCAGACGAATTAGCACTAGAATTTTTACAGTCTACAGTCAAGTNTGTTATTTTCCGCTTCTTTGTTCTTCGTA ] consensusID : consensus_5563#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 449 fasta sequence [AGAGACATATTTAAATGCAGTGTAGAATCCATGTTACAATTGTTATTATTGTTTAATAAACCATCTGAAAATAGCGGACCTTTTACATCAATTTCTAAAACGTTTTCTGTAGATTGCGATACAGAGTTTAAAGGGGGAGAAAAATTTCTAAAATTTTCATNACAATCTATTAGTATACAGCCAGCCGTATCAGANAGAGGGGATGAAGTATGTATNCTTGAAAGNCNAGTNTTTGTNAGTAGAGTTGGANTAAAAGATGNCGGTGGCGAATCCGATACTGANTTNNAGGGCAGNTTAGAANTGTGGTNTCCTGTGAAGCAAGAAAATTGACTCTTTCCATCAATAATTTTCGNANCAGCANNATNATCAGTTNACATATCTTNACTGCAACGCCTACTGCAGTNATTTACAAAATTAAAACTCCCGGAGTGTTTTTTTTNTGTGGGACA] [-] EMBL BE431302 [AGAGACATATTTAAATGCAGTGTAGAATCCATGTTACAATTGTTATTATTGTTTAATAAACCATCTGAAAATAGCGGACCTTTTACATCAATTTCTAAAACGTTTTCTGTAGATTGCGATACAGAGTTTAAAGGGGGAGAAAAATTTCTAAAATTTTCATNACAATCTATTAGTATACAGCCAGCCGTATCAGANAGAGGGGATGAAGTATGTATNCTTGAAAGNCNAGTNTTTGTNAGTAGAGTTGGANTAAAAGATGNCGGTGGCGAATCCGATACTGANTTNNAGGGCAGNTTAGAANTGTGGTNTCCTGTGAAGCAAGAAAATTGACTCTTTCCATCAATAATTTTCGNANCAGCANNATNATCAGTTNACATATCTTNACTGCAACGCCTACTGCAGTNATTTACAAAATTAAAACTCCCGGAGTGTTTTTTTTNTGTGGGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5563#0 ATGACGGTGGCGAATCCGATACTGATTTCGAGGGCAGATTAGAATTGTGGTCTCCTGTGA 60 consensus_5563#1 -----------------------------AGAGACATATTTAAAT-GCAGTGTAGAATCC 30 * ** *** *** * ** * * consensus_5563#0 AGCAAGAAAATTGACTCTTTCCATCAATAATTT-TCGAAACAGCACGATTATCAGTTGAC 119 consensus_5563#1 A-TGTTACAATTGTTATTATTGTTTAATAAACCATCTGAAAATAGCGGACCT---TTTAC 86 * * ***** * * * ***** ** ** * ** * ** ** consensus_5563#0 ATAACTTTACTGCAACGCCTACTGCAGGTATT--TACAAAATTAAAACTCCCGGAGTGTT 177 consensus_5563#1 ATCAATTT-CTAAAACGTTTTCTGTAGATTGCGATACAGAGTTTAAAGGGGGAGAAAAAT 145 ** * *** ** **** * *** ** * **** * ** *** ** * consensus_5563#0 TTTTTTTGTGGTACATTAAAATGGACTCTCTTCGGAGAGATGAAGATGCTTGAGAGGAAA 237 consensus_5563#1 TTCTAAAATTTT-CATNACAAT-----CTATTAGTATACAGCCAGCCGTATCAGANAGAG 199 ** * * * *** * *** ** ** * * * * ** * * *** * consensus_5563#0 TCCATGTAGTAAGGCGAGTTGAACGCCGTGTTGGTTTAGGAAACAATACACAGGATTCAG 297 consensus_5563#1 GGGATGAAGTATGTATNCTTGAAAGNCNAGTNTTTGTNAGTAGAGTTGGANTAAAAGATG 259 *** **** * ***** * * ** * * * * * * * * consensus_5563#0 CGGATTCAAAATCCAATATAGATGAACTTGAGTCACCTTCAGAACACAGGCTATCTGATG 357 consensus_5563#1 NCGGTGGCGAATCCGATAC---TGANTTNNAGGGCAGNTTAGAAN-TGTGGTNTCCTGTG 315 * * ***** *** *** * ** * **** * * ** ** consensus_5563#0 ATTCTGTGCTTACCAGTTCCTGGTTAGATTGGACAGATTTAGCCGACGATGACTCTTGTT 417 consensus_5563#1 AAGC-AAGAAAATTGACTCTT---TCCATCAATAATTTTCGNANCAGCANNATNATCAGT 371 * * * * ** * * ** * ** * * * * * consensus_5563#0 TACCAGACGAATTAGCACTAGAATTTTTACAGTCTACAGTCAAGTTTGTTATTTTCCGCT 477 consensus_5563#1 TNACATATCT-TNACTGCAACGCCTACTGCAGTN-ATTTACAAAATTAAAACTCCCGGAG 429 * ** * * * * * * * **** * *** ** * * * * consensus_5563#0 TCTTTGTTCTTCGTACCATCTCATGAG 504 consensus_5563#1 TGTTTTTTTTNTGTGGGACA------- 449 * *** ** * ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||