cluster # 5566

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Schistosoma mansoni
cluster # 5566 cluster # 5566 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5566#0 length = 376 sequences # 1

consensus_5566#1 length = 371 sequences # 1
consensus_5566#2 length = 343 sequences # 1

consensusID : consensus_5566#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 376
fasta sequence

                              [CAAATGCACCAAGTTTTTGACCAACACGAATATTTACTGCTGTAAACAATCCAAGAGGAACCATATATATTATTGACTGAATTTGAAACACGATTGCCTGAGCTCCCAGCGTTACACTTCCAAGAGTGCCGGCCATTATTGTCATAATTCCGAAACACCATTCTTCTAGTCCCACCATTAAAACACCGGGAATTCCCAATTTGAAAAATATACCCCAATTACTGAATGCAGAATTTAAATTGAATCCTGGGAACAGGATAGACTACTAATAACGGGTTTTAGAATAATATAAGGTGATACTGATACAGAGATTGTGAATGAAACTATAAACTNTGTAGTTCACTGACATACTAAATAAGTGTNTTATTCTTCAGTA]

[+] EMBL CD182225             [CAAATGCACCAAGTTTTTGACCAACACGAATATTTACTGCTGTAAACAATCCAAGAGGAACCATATATATTATTGACTGAATTTGAAACACGATTGCCTGAGCTCCCAGCGTTACACTTCCAAGAGTGCCGGCCATTATTGTCATAATTCCGAAACACCATTCTTCTAGTCCCACCATTAAAACACCGGGAATTCCCAATTTGAAAAATATACCCCAATTACTGAATGCAGAATTTAAATTGAATCCTGGGAACAGGATAGACTACTAATAACGGGTTTTAGAATAATATAAGGTGATACTGATACAGAGATTGTGAATGAAACTATAAACTNTGTAGTTCACTGACATACTAAATAAGTGTNTTATTCTTCAGTA]




>consensus_5566#0
CAAATGCACCAAGTTTTTGACCAACACGAATATTTACTGCTGTAAACAATCCAAGAGGAA
CCATATATATTATTGACTGAATTTGAAACACGATTGCCTGAGCTCCCAGCGTTACACTTC
CAAGAGTGCCGGCCATTATTGTCATAATTCCGAAACACCATTCTTCTAGTCCCACCATTA
AAACACCGGGAATTCCCAATTTGAAAAATATACCCCAATTACTGAATGCAGAATTTAAAT
TGAATCCTGGGAACAGGATAGACTACTAATAACGGGTTTTAGAATAATATAAGGTGATAC
TGATACAGAGATTGTGAATGAAACTATAAACTNTGTAGTTCACTGACATACTAAATAAGT
GTNTTATTCTTCAGTA

consensusID : consensus_5566#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 371
fasta sequence

                              [AGAACTAGCATGNCTTTTAGTATAAATCTTAATAGCGTCAAATTGTTTTTACTTTTAACTGTAACCAGATTTTTAGTGTGTAATACTCCTTCGTCACTTACTTAAATGATGTACAACCACATAAATGAAAATTAAAACGATCTCAGTGGACTAATAATGACATTGTATAAAGTATACTTTGGTTATTGAAAAGGATGACTTTATCACTTACCATTCCATGTTTCCTTATAAACTTTGGAAGCTAATATATATCCCAATTCGCAAAGAAACATGCAACCAAACGATAAGGAAAGGCAGACAGCTGAAGCGCTAGAACATANAATAAGTCTAATTATTATCACTTACGCCAATATTAATCGTTTTAAATAATG]

[+] EMBL CD201602             [AGAACTAGCATGNCTTTTAGTATAAATCTTAATAGCGTCAAATTGTTTTTACTTTTAACTGTAACCAGATTTTTAGTGTGTAATACTCCTTCGTCACTTACTTAAATGATGTACAACCACATAAATGAAAATTAAAACGATCTCAGTGGACTAATAATGACATTGTATAAAGTATACTTTGGTTATTGAAAAGGATGACTTTATCACTTACCATTCCATGTTTCCTTATAAACTTTGGAAGCTAATATATATCCCAATTCGCAAAGAAACATGCAACCAAACGATAAGGAAAGGCAGACAGCTGAAGCGCTAGAACATANAATAAGTCTAATTATTATCACTTACGCCAATATTAATCGTTTTAAATAATG]




>consensus_5566#1
AGAACTAGCATGNCTTTTAGTATAAATCTTAATAGCGTCAAATTGTTTTTACTTTTAACT
GTAACCAGATTTTTAGTGTGTAATACTCCTTCGTCACTTACTTAAATGATGTACAACCAC
ATAAATGAAAATTAAAACGATCTCAGTGGACTAATAATGACATTGTATAAAGTATACTTT
GGTTATTGAAAAGGATGACTTTATCACTTACCATTCCATGTTTCCTTATAAACTTTGGAA
GCTAATATATATCCCAATTCGCAAAGAAACATGCAACCAAACGATAAGGAAAGGCAGACA
GCTGAAGCGCTAGAACATANAATAAGTCTAATTATTATCACTTACGCCAATATTAATCGT
TTTAAATAATG

consensusID : consensus_5566#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 343
fasta sequence

                              [ATATATTATTGACTGAATTTGAAACACGATTGCCTGAGCTCCCAGCGTTACACTTCCAAGAGTGCCGGCCATTATTGTCATAATTTCAAAACACCATTCTTCTAGTCCCACCATCAAAACACCGGGAATTCCCAATTTGAAAAATATACCCCAATTACTGAATGCAGAATTTAAATTGAATCCATTCCATGTTTCCTTATAAACTTTGGAAGCTAATATATATCCCAATTCGCAAAGAAACATGCAACCAAACGATAAGGAAAGGCAGACAGCTGAAGCGCGCAGTCCATAGTTTAATCGAACAACAAAATAATACTGTGCTAAAATATTAAAAACTGTCCCT]

[+] EMBL CD154972             [ATATATTATTGACTGAATTTGAAACACGATTGCCTGAGCTCCCAGCGTTACACTTCCAAGAGTGCCGGCCATTATTGTCATAATTTCAAAACACCATTCTTCTAGTCCCACCATCAAAACACCGGGAATTCCCAATTTGAAAAATATACCCCAATTACTGAATGCAGAATTTAAATTGAATCCATTCCATGTTTCCTTATAAACTTTGGAAGCTAATATATATCCCAATTCGCAAAGAAACATGCAACCAAACGATAAGGAAAGGCAGACAGCTGAAGCGCGCAGTCCATAGTTTAATCGAACAACAAAATAATACTGTGCTAAAATATTAAAAACTGTCCCT]




>consensus_5566#2
ATATATTATTGACTGAATTTGAAACACGATTGCCTGAGCTCCCAGCGTTACACTTCCAAG
AGTGCCGGCCATTATTGTCATAATTTCAAAACACCATTCTTCTAGTCCCACCATCAAAAC
ACCGGGAATTCCCAATTTGAAAAATATACCCCAATTACTGAATGCAGAATTTAAATTGAA
TCCATTCCATGTTTCCTTATAAACTTTGGAAGCTAATATATATCCCAATTCGCAAAGAAA
CATGCAACCAAACGATAAGGAAAGGCAGACAGCTGAAGCGCGCAGTCCATAGTTTAATCG
AACAACAAAATAATACTGTGCTAAAATATTAAAAACTGTCCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5566#0      CAAATGCACCAAGTTTTTGACCAACACGAATATTTACTGCTGTAAACAATCCAAGAG--G 58
consensus_5566#2      ------------------------------------------------------------
consensus_5566#1      --------------------AGAACTAGCATGNCTTTTAGTATAAATCTTAATAGCGTCA 40
                                                                                  

consensus_5566#0      AACCATATATATTATTGACTGAATTTGAAACACGATTGCCTGAGCTCCCAGCGTTACACT 118
consensus_5566#2      ------ATATATTATTGACTGAATTTGAAACACGATTGCCTGAGCTCCCAGCGTTACACT 54
consensus_5566#1      AATTGTTTTTACTTTTAACTGTAACCAGATTTTTAGTGTGTAATACTCCTTCGT--CACT 98
                             * ** * ** **** *     *     * **  * *    **  ***  ****

consensus_5566#0      TCCAAGAGTGCCGGCCATTATTGTCATAATTCCGAAACACCATTCTTCTAGTCCCACCAT 178
consensus_5566#2      TCCAAGAGTGCCGGCCATTATTGTCATAATTTCAAAACACCATTCTTCTAGTCCCACCAT 114
consensus_5566#1      TACTTAAATGATGTACA--ACCA-CATAAATGAAAATTAAAACGATCTCAGTGGACTAAT 155
                      * *   * **  *  **  *    ***** *   **  *  *   *   ***      **

consensus_5566#0      TAAAACACCGGGAATTCCCAATTTGAAAAATATACCCCAATTACTGAATGCAGAATTTAA 238
consensus_5566#2      CAAAACACCGGGAATTCCCAATTTGAAAAATATACCCCAATTACTGAATGCAGAATTTAA 174
consensus_5566#1      AATGACATTG-------------TATAAAGTATACTTTGGTTATTGAAAAGGATGACTTT 202
                       *  ***  *             *  *** *****     *** ****         *  

consensus_5566#0      ATTGAAT-CCTGGGAACAGG-----ATAGACTACTAATAACGGGTTTTAGAATAAT--AT 290
consensus_5566#2      ATTGAAT-CCATTCCATGTTTCCTTATAAACTTTGGAAGCTAATATATATCCCAATTCGC 233
consensus_5566#1      ATCACTTACCATTCCATGTTTCCTTATAAACTTTGGAAGCTAATATATATCCCAATTCGC 262
                      **    * **     *         *** ***    *        * **    ***    

consensus_5566#0      AAGGTGATACTGATACAGA-GATTGTGAATG--AAACTA-TAAACTNTGTAGTTCAC-TG 345
consensus_5566#2      AAAGAAACATGCAACCAAACGATAAGGAAAGGCAGACAGCTGAAGCGCGCAGTCCAT-AG 292
consensus_5566#1      AAAGAAACATGCAACCAAACGATAAGGAAAGGCAGACAGCTGAAGCGC-TAGAACATANA 321
                      ** *  * *   *  ** * ***   *** *  * **   * **      **  **    

consensus_5566#0      ACATACTAAATAAGTGTNTTATTCTTCAGTA-------------------- 376
consensus_5566#2      TTTAATCGAACAACAAAATAATACTGTGCTAAAATATTAAAAACTGTCCCT 343
consensus_5566#1      ATAAGTCTAATTATTATCACTTACGCCAATATTAATCGTTTTAAATAATG- 371
                              **  *        * *     **