cluster # 5568

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Schistosoma mansoni
cluster # 5568 cluster # 5568 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5568#0 length = 362 sequences # 2

consensus_5568#1 length = 336 sequences # 1

consensusID : consensus_5568#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 362
fasta sequence

                              [TGGACCTGGCACTCCATGATCTCCTTTTTCACCAATGAGGCCAGTCGGACCAGGATCACCTATCTCTCCTAATGGACCCATTTGACCTGGTCTACCCTTTATTCCAGGTAGTCCTTGAGCACCTTTTAATCCTTTTTCACCTTTCTCACCTTTTTCGGCTACTCCGGCTAGACCTGGAAGACCTTTATTTCCAGGTATTCCATCATCTCCTGGTTCACCTGGGAAACCTTTTATACCTTTGAGTCCTGGTAAACCTTTTTGTCCTTTAACTCCAACTCCTATTCCTCCTGGTTCTCCTGGAAGTCCCTTAGGACCCATTAAACCAGGTAATCCTTTAGGTCCTAGTGATCCAGGAAGACCTC]

[+] EMBL CD180366             [TGGACCTGGCACTCCATGATCTCCTTTTTCACCAATGAGGCCAGTCGGACCAGGATCACCTATCTCTCCTAATGGACCCATTTGACCTGGTCTACCCTTTATTCCAGGTAGTCCTTGAGCACCTTTTAATCCTTTTTCACCTTTCTCACCTTTTTCGGCTACTCCGGCTAGACCTGGAAGACCTTTATTTCCAGGTATTCCATCATCTCCTGGTTCACCTGGGAAACCTTTTATACCTTTGAGTCCTGGTAAACCTTTTTGTCCTTTAACTCCAACTCCTATTCCTCCTGGTTCTCCTGGAAGTCCCTTAGGACCCATTAAACCAGGTAATCCTTTAGGTCCTAGTGATCCAGGAAGACCTC]
[+] EMBL CD180437             [TGGACCCGGCACTCCATGATCTCCTTTTTCACCAATGAGGCCAGTCGGACCAGGATCACCTATCTCTCCTAATGGACCCATTTGACCTGGTCTACCCTTTATTCCAGGTAGTCCTTGAGCACCTTTTAATCCTTTTTCACCTTTCTCACCTTTTTCGGCTACTCCGGCTAGACCTGGAAGACCTTTATTTCCAGGTATTCCATCATCTCCTGGTTCACCTGGGAAACCTTTTATACCTTTGAGTCCTGCTAAACCTTTTTGTCCTTTAACTCCAACTCCTATTCCTCCTGGTTCTCCTGGAAGTCCCTTAGGACCCATTAAACCAGGTAATCCTTTAGGTCCTAGTGATCCAGGAAGACC  ]




>consensus_5568#0
TGGACCTGGCACTCCATGATCTCCTTTTTCACCAATGAGGCCAGTCGGACCAGGATCACC
TATCTCTCCTAATGGACCCATTTGACCTGGTCTACCCTTTATTCCAGGTAGTCCTTGAGC
ACCTTTTAATCCTTTTTCACCTTTCTCACCTTTTTCGGCTACTCCGGCTAGACCTGGAAG
ACCTTTATTTCCAGGTATTCCATCATCTCCTGGTTCACCTGGGAAACCTTTTATACCTTT
GAGTCCTGGTAAACCTTTTTGTCCTTTAACTCCAACTCCTATTCCTCCTGGTTCTCCTGG
AAGTCCCTTAGGACCCATTAAACCAGGTAATCCTTTAGGTCCTAGTGATCCAGGAAGACC
TC

consensusID : consensus_5568#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 336
fasta sequence

                              [TACACCTTTTTCTCCCTTAGGGCCCATAGGTCCTGGTTGACCGGGTAGACCATCTTTACCAGATATCCCTTGAATTCCTTGACCACCTTTCGGACCTTGTAAACCTTTAGGTCCAGGTGGACCTACTATACCAGGTTGACCTTTTTCCCCTTTTGGTCCAACATCAGCTAATCGATCAGTTGTACCGCGTGAGCCCTTTTCACCTTTATCGCCCAATGGTCCAGGTAGCCCCGGTAGTCCTCTTGGTCCTAAATCGCCAGGCTCGCCGGCTATGCCATTTCGACCAGGACGACCAGCTGGACCTGGCACTCCATGATCTCCTTTTTCACCAATGAG]

[+] EMBL CD189108             [TACACCTTTTTCTCCCTTAGGGCCCATAGGTCCTGGTTGACCGGGTAGACCATCTTTACCAGATATCCCTTGAATTCCTTGACCACCTTTCGGACCTTGTAAACCTTTAGGTCCAGGTGGACCTACTATACCAGGTTGACCTTTTTCCCCTTTTGGTCCAACATCAGCTAATCGATCAGTTGTACCGCGTGAGCCCTTTTCACCTTTATCGCCCAATGGTCCAGGTAGCCCCGGTAGTCCTCTTGGTCCTAAATCGCCAGGCTCGCCGGCTATGCCATTTCGACCAGGACGACCAGCTGGACCTGGCACTCCATGATCTCCTTTTTCACCAATGAG]




>consensus_5568#1
TACACCTTTTTCTCCCTTAGGGCCCATAGGTCCTGGTTGACCGGGTAGACCATCTTTACC
AGATATCCCTTGAATTCCTTGACCACCTTTCGGACCTTGTAAACCTTTAGGTCCAGGTGG
ACCTACTATACCAGGTTGACCTTTTTCCCCTTTTGGTCCAACATCAGCTAATCGATCAGT
TGTACCGCGTGAGCCCTTTTCACCTTTATCGCCCAATGGTCCAGGTAGCCCCGGTAGTCC
TCTTGGTCCTAAATCGCCAGGCTCGCCGGCTATGCCATTTCGACCAGGACGACCAGCTGG
ACCTGGCACTCCATGATCTCCTTTTTCACCAATGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5568#0      TGGACCTGGCACTCCATGATCTCCTTTTTCACCAATGAGGCCAGTCGGACCAGGATCACC 60
consensus_5568#1      ---------TACACCTTTTTCTCCCTTAGGGCCCATAGGTCCTGGTTGACCGGGTAGACC 51
                                ** ** *  ***** **    ** **  * ** *   **** **   ***

consensus_5568#0      TATCTCTCCTAATGGACCCATTTGACCTGGTCTACCCTTTATTCCAGGTAGTCCTTGAGC 120
consensus_5568#1      ATCTTTACCAGATATCCCTTGAATTCCTTGACCACCTTTCGGACCTTGTAAACCTTTAGG 111
                          *  **  **   **       *** * * *** **    **  ***  **** ** 

consensus_5568#0      ACCTTTTAATCCTTTTTCACCTTTCTCACCTTTTTCGGCTACTCCGGCTAGACCTGGAAG 180
consensus_5568#1      TCCAGGTGGACCTACTATACCAGGTTGACCTTTTTCCCCTTTTGGTCCAACATCAGCTAA 171
                       **   *   ***  *  ***    * *********  **  *    * * * * *  * 

consensus_5568#0      ACCTTTATTTCCAGGTATTCCATCATCTCCTGGTTCACCTGGGAAACCTTTTATACCTTT 240
consensus_5568#1      TCGATCAGTT----GTACCGCGTGAGCCCTT--TTCACCTTTATCGCCCAATGGTCCAGG 225
                       *  * * **    ***   * * * * * *  *******      **   *   **   

consensus_5568#0      GAGTCCTGGTAAACCTTTTTGTCCTTTAACTCCAACTCCTATTCCTCCTGGTTCTCCTGG 300
consensus_5568#1      TAGCCCCGGTAGTCCTCTTGGTCCTAAATCGCCAGGCTC---GCCGGCTATGCCATTTCG 282
                       ** ** ****  *** ** *****  * * ***    *    **  **    *   * *

consensus_5568#0      AAGTCCCTTAGGACCCATTAAACCAGGTAATCCTTTAGGTCCTAGTGATCCAGGAAGACC 360
consensus_5568#1      A---CCAGGACGACCAGCTGGACCTGGCACTCCATGATCTCCTTTTTCACCAATGAG--- 336
                      *   **   * ****   *  *** ** * *** * *  ****  *   ***   **   

consensus_5568#0      TC 362
consensus_5568#1      --