cluster # 5570

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Schistosoma mansoni
cluster # 5570 cluster # 5570 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5570#0 length = 368 sequences # 2

consensus_5570#1 length = 282 sequences # 1

consensusID : consensus_5570#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 368
fasta sequence

                              [CTGTGGAAGTCAGTGTGGAGGTTCCTCAAAAAGCAAGAAACAGGTCCCCCACGAGATACAGCTGTCACACTCCGAGGCCTAGACCCAAAGGACCCCATATGCATTCTAGAGAGACCTGCTCATCCCTTTCCACTGCTTCTTTATTTACAGTTTCTAGGAAATTGGAACCACGCAGAGGGCTTTTAGATGATGAATGGGTTTATTAAAATCATATTATTAGGAATGTAGCCAAAC-TTATTATAGGTCTTAATTGGGGGGCCCGTACCCAATTGGCCTATAATGAGCGGATTTACATTCACTGGGCGGCGTTTAACAGTCCTGAATTGGAAAACCTTGGGTTTCCACATTATTCCTTCGAAGATCTCCTT]

[+] EMBL AI723345             [CTGTGGAAGTCAGTGTGGAGGTTCCTCAAAAAGCAAGAAACAGGTCCCCCACGAGATACAGCTGTCACACTCCGAGGCCTAGACCCAAAGGACCCCATATGCATTCTAGAGAGACCTGCTCATCCCTTTCCACTGCTTCTTTATTTACAGTTTCTAGGAAATTGGAACCACGCAGAGGGCTTTTAGATGATGAATGGGTTTATTAAAATCATATTATTAGGAATGTAGCCAAAC TTATTATAGGTCTTAATTGGGGGGCCCGTACCCAATTGGCCTATAATGAGCGGATTTACATTCACTGGGCGGCGTTTAACAGTCCTGAATTGGAAAACCTTGGGTTTCCACATTATTCCTTCGAAGATCTCCTT]
[+] EMBL AI381071             [CTGTGGAAGTCAGTGTGGAGGTTCCTCAAAAAGCAAGAAACAGGTCCCCCACGAGATACAGCTGTCACACTCCGAGGCCTAGACCCAAAGGACCCCATATGCATTCTAGAGAGACCTGCTCATCCCTTCCCACTGCTTCTTTATTTACAGTTTCTAGGAAATGGAAACCACGCAGAGGGCTTTTAGATGATGAATGGG TTAATAAAATCATA TAATAAGAATGTAG CAACCATTA TATAGG CTTt                                                                                                                       ]




>consensus_5570#0
CTGTGGAAGTCAGTGTGGAGGTTCCTCAAAAAGCAAGAAACAGGTCCCCCACGAGATACA
GCTGTCACACTCCGAGGCCTAGACCCAAAGGACCCCATATGCATTCTAGAGAGACCTGCT
CATCCCTTTCCACTGCTTCTTTATTTACAGTTTCTAGGAAATTGGAACCACGCAGAGGGC
TTTTAGATGATGAATGGGTTTATTAAAATCATATTATTAGGAATGTAGCCAAACTTATTA
TAGGTCTTAATTGGGGGGCCCGTACCCAATTGGCCTATAATGAGCGGATTTACATTCACT
GGGCGGCGTTTAACAGTCCTGAATTGGAAAACCTTGGGTTTCCACATTATTCCTTCGAAG
ATCTCCTT

consensusID : consensus_5570#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 282
fasta sequence

                              [CTGTGGAAGTCAGTGTGGAGGTTCCTCAAAAAGCAAGAAACAGGTCCCCCACGAGATACAGCTGTCACACTCCGAGGCCTAGACCCAAAGGACCCCATATGCATTCTAGAAGAGACCTGGCTCATCCCTTGCCACTGCTTCTTTGATTGACAGGTTCGGGGAAATGGAAACACGCAGAGGCCTTTTAAATGAATGAAATGGGGTTAATAAAATTCTTTTATTAAGAAATTGTAGCAAACATGTAAAAAAGGGCCTTAATGGGGGGGGCCCGGAACCAATTCG]

[+] EMBL AI964715             [CTGTGGAAGTCAGTGTGGAGGTTCCTCAAAAAGCAAGAAACAGGTCCCCCACGAGATACAGCTGTCACACTCCGAGGCCTAGACCCAAAGGACCCCATATGCATTCTAGAAGAGACCTGGCTCATCCCTTGCCACTGCTTCTTTGATTGACAGGTTCGGGGAAATGGAAACACGCAGAGGCCTTTTAAATGAATGAAATGGGGTTAATAAAATTCTTTTATTAAGAAATTGTAGCAAACATGTAAAAAAGGGCCTTAATGGGGGGGGCCCGGAACCAATTCG]




>consensus_5570#1
CTGTGGAAGTCAGTGTGGAGGTTCCTCAAAAAGCAAGAAACAGGTCCCCCACGAGATACA
GCTGTCACACTCCGAGGCCTAGACCCAAAGGACCCCATATGCATTCTAGAAGAGACCTGG
CTCATCCCTTGCCACTGCTTCTTTGATTGACAGGTTCGGGGAAATGGAAACACGCAGAGG
CCTTTTAAATGAATGAAATGGGGTTAATAAAATTCTTTTATTAAGAAATTGTAGCAAACA
TGTAAAAAAGGGCCTTAATGGGGGGGGCCCGGAACCAATTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5570#0      CTGTGGAAGTCAGTGTGGAGGTTCCTCAAAAAGCAAGAAACAGGTCCCCCACGAGATACA 60
consensus_5570#1      CTGTGGAAGTCAGTGTGGAGGTTCCTCAAAAAGCAAGAAACAGGTCCCCCACGAGATACA 60
                      ************************************************************

consensus_5570#0      GCTGTCACACTCCGAGGCCTAGACCCAAAGGACCCCATATGCATTCTAGA-GAGACCTG- 118
consensus_5570#1      GCTGTCACACTCCGAGGCCTAGACCCAAAGGACCCCATATGCATTCTAGAAGAGACCTGG 120
                      ************************************************** ******** 

consensus_5570#0      CTCATCCCTTTCCACTGCTTCTTT-ATTTACAGTTTCTAGGAAATTGGAACCACGCAGAG 177
consensus_5570#1      CTCATCCCTTGCCACTGCTTCTTTGATTGACAGGTTCGGGGAAAT-GGAAACACGCAGAG 179
                      ********** ************* *** **** ***  ****** **** *********

consensus_5570#0      GGCTTTTAGATGAT--GAATGGGTTTATTAAAATCATATTATTAGGAA--TGTAGCCAAA 233
consensus_5570#1      GCCTTTTAAATGAATGAAATGGGGTTAATAAAATTCTTTTATTAAGAAATTGTAGC-AAA 238
                      * ****** ****    ****** *** ******  * ****** ***  ****** ***

consensus_5570#0      CTTATTATA---GGTCTTAATTGGGGGG-CCCGTACCCAATTGGCCTATAATGAGCGGAT 289
consensus_5570#1      CATGTAAAAAAGGGCCTTAATGGGGGGGGCCCGGAACCAATTCG---------------- 282
                      * * * * *   ** ****** ****** **** * ****** *                

consensus_5570#0      TTACATTCACTGGGCGGCGTTTAACAGTCCTGAATTGGAAAACCTTGGGTTTCCACATTA 349
consensus_5570#1      ------------------------------------------------------------
                                                                                  

consensus_5570#0      TTCCTTCGAAGATCTCCTT 368
consensus_5570#1      -------------------