cluster # 5571

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Schistosoma mansoni
cluster # 5571 cluster # 5571 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5571#0 length = 417 sequences # 2

consensus_5571#1 length = 318 sequences # 1

consensusID : consensus_5571#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 417
fasta sequence

                              [GCTGAGTACAAATGTTGTGATACACCTGATGCGTTTCTTGGCCGACGTCGTTAAACCTACATTTCAACTCCTCTAATTCTAGTCGTTAATTTACCAACATCATCGTCAACATTATTGTTATTATCTCCACTTTTGTTATGCGTGATTAAAGCCAATCAAGAACTATAAATCTCCGTTATGAAATTCACCTCATTGGCAAATTTCAATAAGGTTTTCATGGGTCTTGATGTTCTCCCATTAGAAAATGGTCAACCGATTCGTGGTGGATTCTACAAAAGTTCACAAATTTTTATCCCACTCGCTAAATTTATGAATGTTCCATTAGATCAAATTAACTATGTCGTTAGTGGAGTGATTAGTATCGGTCTGGGTCAACTGATGCGACGCCGGTTATCACCTCAGAAATACTCCCCACGA]

[+] EMBL AI975465             [GCTGAGTACAAATGTTGTGATACACCTGATGCGTTTCTTGGCCGACGTCGTTAAACCTACATTTCAACTCCTCTAATTCTAGTCGTTAATTTACCAACATCATCGTCAACATTATTGTTATTATCTCCACTTTTGTTATGCGTGATTAAAGCCAATCAAGAACTATAAATCTCCGTTATGAAATTCACCTCATTGGCAAATTTCAATAAGGTTTTCATGGGTCTTGATGTTCTCCCATTAGAAAATGGTCAACCGATTCGTGGTGGATTCTACAAAAGTTCACAAATTTTTATCCCACTCGCTAAATTTATGAATGTTCCATTAGATCAAATTAACTATGTCGTTAGTGGAGTGATTAGTATCGGTCTGGGTCAACTGATGCGACGCCGGTTATCACCTCAGAAATACTCCCCACGA]
[+] EMBL AI976500             [GCTGAGTACAAATGTTGTGATACACCTGATGCGTTTCTTGGCCGACGTCGTTAAACCTACATTTCAACTCCTCTAATTCTAGTCGTTAATTTACCAACATCATCGTCAACATTATTGTTATTATCTCCACTTTTGTTATGCGTGATTAAAGCCAATCAAGAACTATAAATCTCCGTTATGAAATTCACCTCATTGGCAAATTTCAATAAGGTTTTCATGGGTCTTGATGTTCTCCCATTAGAAAATGGTCAACCGATTCGTGGTGGATTCTACAAAAGTTCACAAATTTTTATCCCACTCGCTAAATTTATGAATGTTCCATTAGATCAAATTAACTATGTCGTTAGTGGAGTGATTAGTATCGGTCTGGGTCAACTGATGCGACGCCGGTTATCACCTCAGAAATACTCCCCACGA]




>consensus_5571#0
GCTGAGTACAAATGTTGTGATACACCTGATGCGTTTCTTGGCCGACGTCGTTAAACCTAC
ATTTCAACTCCTCTAATTCTAGTCGTTAATTTACCAACATCATCGTCAACATTATTGTTA
TTATCTCCACTTTTGTTATGCGTGATTAAAGCCAATCAAGAACTATAAATCTCCGTTATG
AAATTCACCTCATTGGCAAATTTCAATAAGGTTTTCATGGGTCTTGATGTTCTCCCATTA
GAAAATGGTCAACCGATTCGTGGTGGATTCTACAAAAGTTCACAAATTTTTATCCCACTC
GCTAAATTTATGAATGTTCCATTAGATCAAATTAACTATGTCGTTAGTGGAGTGATTAGT
ATCGGTCTGGGTCAACTGATGCGACGCCGGTTATCACCTCAGAAATACTCCCCACGA

consensusID : consensus_5571#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 318
fasta sequence

                              [TCTTGTGATTTGTTGCATGTTCTAGTCGTTAATTTACCAACATCATCGTCAACATTATTGTTATTATCTCCACTTTTGTTATGCGTGATTAAAGCCAATCAAGAACTATAAATCTCCGTCTTGAGAATTCACCTCATTGCCAAATTTCAATAAGGTTTTCATGGGTCTTGATGTTCTCCCACTTAGAAAATGGTCAACCGATTCGTGGTGGATTCTACAAAAGGTCACGAATTTTTATCCCACTCGCTAAATGTATGAATGTTGCATTAGATCGAATGAATTATGTCGTTAGTTGAGTGATTAGTATCGATCTGGGTC]

[-] EMBL CD098363             [TCTTGTGATTTGTTGCATGTTCTAGTCGTTAATTTACCAACATCATCGTCAACATTATTGTTATTATCTCCACTTTTGTTATGCGTGATTAAAGCCAATCAAGAACTATAAATCTCCGTCTTGAGAATTCACCTCATTGCCAAATTTCAATAAGGTTTTCATGGGTCTTGATGTTCTCCCACTTAGAAAATGGTCAACCGATTCGTGGTGGATTCTACAAAAGGTCACGAATTTTTATCCCACTCGCTAAATGTATGAATGTTGCATTAGATCGAATGAATTATGTCGTTAGTTGAGTGATTAGTATCGATCTGGGTC]




>consensus_5571#1
TCTTGTGATTTGTTGCATGTTCTAGTCGTTAATTTACCAACATCATCGTCAACATTATTG
TTATTATCTCCACTTTTGTTATGCGTGATTAAAGCCAATCAAGAACTATAAATCTCCGTC
TTGAGAATTCACCTCATTGCCAAATTTCAATAAGGTTTTCATGGGTCTTGATGTTCTCCC
ACTTAGAAAATGGTCAACCGATTCGTGGTGGATTCTACAAAAGGTCACGAATTTTTATCC
CACTCGCTAAATGTATGAATGTTGCATTAGATCGAATGAATTATGTCGTTAGTTGAGTGA
TTAGTATCGATCTGGGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5571#0      GCTGAGTACAAATGTTGTGATACACCTGATGCGTTTCTTGGCCGACGTCGTTAAACCTAC 60
consensus_5571#1      ------------------------------------------------------TCTTGT 6
                                                                             * *  

consensus_5571#0      ATTTCAACTCCTCTAATTCTAGTCGTTAATTTACCAACATCATCGTCAACATTATTGTTA 120
consensus_5571#1      GATTTGTTGCAT---GTTCTAGTCGTTAATTTACCAACATCATCGTCAACATTATTGTTA 63
                        **     * *    ********************************************

consensus_5571#0      TTATCTCCACTTTTGTTATGCGTGATTAAAGCCAATCAAGAACTATAAATCTCCGTTATG 180
consensus_5571#1      TTATCTCCACTTTTGTTATGCGTGATTAAAGCCAATCAAGAACTATAAATCTCCGTCTTG 123
                      ********************************************************  **

consensus_5571#0      A-AATTCACCTCATTGGCAAATTTCAATAAGGTTTTCATGGGTCTTGATGTTCTCCCA-T 238
consensus_5571#1      AGAATTCACCTCATTGCCAAATTTCAATAAGGTTTTCATGGGTCTTGATGTTCTCCCACT 183
                      * ************** ***************************************** *

consensus_5571#0      TAGAAAATGGTCAACCGATTCGTGGTGGATTCTACAAAAGTTCACAAATTTTTATCCCAC 298
consensus_5571#1      TAGAAAATGGTCAACCGATTCGTGGTGGATTCTACAAAAGGTCACGAATTTTTATCCCAC 243
                      **************************************** **** **************

consensus_5571#0      TCGCTAAATTTATGAATGTTCCATTAGATCAAATTAACTATGTCGTTAGTGGAGTGATTA 358
consensus_5571#1      TCGCTAAATGTATGAATGTTGCATTAGATCGAATGAATTATGTCGTTAGTTGAGTGATTA 303
                      ********* ********** ********* *** ** ************ *********

consensus_5571#0      GTATCGGTCTGGGTCAACTGATGCGACGCCGGTTATCACCTCAGAAATACTCCCCACGA 417
consensus_5571#1      GTATCGATCTGGGTC-------------------------------------------- 318
                      ****** ********