cluster # 5580

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Schistosoma mansoni
cluster # 5580 cluster # 5580 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5580#0 length = 651 sequences # 1

consensus_5580#1 length = 356 sequences # 2

consensusID : consensus_5580#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 651
fasta sequence

                              [TTGGATTATGTGGTGGAGAAGTGTCACAGTGTTCAGCCATAAATATATTTTTGAGTTCCACAGTAATGTCAGATTTATTAGACATAAACCATGGGTGCCTAAATTCAGGCTTATCCGTCAGATGCAACCGTGGGATCCACCAGTAGATCTCAGCAACGACAAAGCTAATGAGAATGAAAGCACATCAGATTTACGTAGAAGATTACGTAGAAATGGAATGTTACCTCCCCTATTATTTTATGATCGTCCAATAAATATTGGACATACAGGAACTATATTTGATCCGTATATCCCTCCTGATGGTGATGGTCAAAGTTCATTACTATCAACAAAGAGACTGGCTCTTTTAAAAGATAATCTCCTTAATAAGGGAAAAAACTATAAGGATTTATCGCTGCTAAAATCACATGAACCATCATTTAATTCCAAACGATTCACTATTGAAGCTGAAAATATTTATGTTGAGGCTCATGATTTATTACAAAATTATCGTCAAAATGAATCCCGATTATTTGAACTAGTTACAGAAAAAGCACTAGTAGATATGACTGCTGACCTAAAACTTCGAACTCTACAATGGAAGTTTGTGGGTAACATTGAGCCACCCAGAGTTGTACAAATACCGCTGCACGAGCTTTTATCTAAAGGCAA]

[+] EMBL BF936551             [TTGGATTATGTGGTGGAGAAGTGTCACAGTGTTCAGCCATAAATATATTTTTGAGTTCCACAGTAATGTCAGATTTATTAGACATAAACCATGGGTGCCTAAATTCAGGCTTATCCGTCAGATGCAACCGTGGGATCCACCAGTAGATCTCAGCAACGACAAAGCTAATGAGAATGAAAGCACATCAGATTTACGTAGAAGATTACGTAGAAATGGAATGTTACCTCCCCTATTATTTTATGATCGTCCAATAAATATTGGACATACAGGAACTATATTTGATCCGTATATCCCTCCTGATGGTGATGGTCAAAGTTCATTACTATCAACAAAGAGACTGGCTCTTTTAAAAGATAATCTCCTTAATAAGGGAAAAAACTATAAGGATTTATCGCTGCTAAAATCACATGAACCATCATTTAATTCCAAACGATTCACTATTGAAGCTGAAAATATTTATGTTGAGGCTCATGATTTATTACAAAATTATCGTCAAAATGAATCCCGATTATTTGAACTAGTTACAGAAAAAGCACTAGTAGATATGACTGCTGACCTAAAACTTCGAACTCTACAATGGAAGTTTGTGGGTAACATTGAGCCACCCAGAGTTGTACAAATACCGCTGCACGAGCTTTTATCTAAAGGCAA]




>consensus_5580#0
TTGGATTATGTGGTGGAGAAGTGTCACAGTGTTCAGCCATAAATATATTTTTGAGTTCCA
CAGTAATGTCAGATTTATTAGACATAAACCATGGGTGCCTAAATTCAGGCTTATCCGTCA
GATGCAACCGTGGGATCCACCAGTAGATCTCAGCAACGACAAAGCTAATGAGAATGAAAG
CACATCAGATTTACGTAGAAGATTACGTAGAAATGGAATGTTACCTCCCCTATTATTTTA
TGATCGTCCAATAAATATTGGACATACAGGAACTATATTTGATCCGTATATCCCTCCTGA
TGGTGATGGTCAAAGTTCATTACTATCAACAAAGAGACTGGCTCTTTTAAAAGATAATCT
CCTTAATAAGGGAAAAAACTATAAGGATTTATCGCTGCTAAAATCACATGAACCATCATT
TAATTCCAAACGATTCACTATTGAAGCTGAAAATATTTATGTTGAGGCTCATGATTTATT
ACAAAATTATCGTCAAAATGAATCCCGATTATTTGAACTAGTTACAGAAAAAGCACTAGT
AGATATGACTGCTGACCTAAAACTTCGAACTCTACAATGGAAGTTTGTGGGTAACATTGA
GCCACCCAGAGTTGTACAAATACCGCTGCACGAGCTTTTATCTAAAGGCAA

consensusID : consensus_5580#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 356
fasta sequence

                              [ACAAATACGCTGCAACGAGCTTTTATCTAAAGGCAATGTTTACGCTCAAGTTACAGTTCGTTTCTATACACAACAGATTTTATCAATTTATAACCGTTTTGGGCGTCTACTATATGGTAATCCGGATACTGCTGTTGATGTACTCGAATATGTTGTATTTGAAAGACATATTTCCGATGAATATGGTACATGGAGATTACACGGTAAAGTCTCTCGTCCAAACTCTACAGTAAACTACACCTATATACCTACTCAACGGTTATTCCCAGTTAATTCATCAACAACATCGGAATCAAATAAATTGATCTCAAATAGTCGAAATGACGTTGATAATCCAATATCACTAAACAGTTTGA]

[+] EMBL CD137065             [ACAAATACGCTGCAACGAGCTTTTATCTAAAGGCAATGTTTACGCTCAAGTTACAGTTCGTTTCTATACACAACAGATTTTATCAATTTATAACCGTTTTGGGCGTCTACTATATGGTAATCCGGATACTGCTGTTGATGTACTCGAATATGTTGTATTTGAAAGACATATTTCCGATGAATATGGTACATGGAGATTACACGGTAAAGTCTCTCGTCCAAACTCTACAGTAAACTACACCTATATACCTACTCAACGGTTATTCCCAGTTAATTCATCAACAACATCGGAATCAAATAAATTGATCTCAAATAGTCGAAATGACGTTGATAATCCAATATCACTAAACAGTTTGA]
[+] EMBL CD136801             [ACAAATACGCTGCAACGAGCTTTTATCTAAAGGCAATGTTTACGCTCAAGTTACAGTTCGTTTCTATACACAACAGATTTTATCAATTTATAACCGTTTTGGGCGTCTACTATATGGTAATCCGGATACTGCTGTTGATGTACTCGAATATGTTGTATTTGAAAGACATATTTCCGATGAATATGGTACATGGAGATTACACGGTAAAGTCTCTCGTCCAAACTCTACAGTAAACTACACCTATATACCTATTCAACGGTTATTCCCAGTTAATTCATCAACAACATCGGAATCAAATAAATTGATCTCAAATAGTCGAAATGACGTTGATAATCCAATATCACTAAACAGTTTGA]




>consensus_5580#1
ACAAATACGCTGCAACGAGCTTTTATCTAAAGGCAATGTTTACGCTCAAGTTACAGTTCG
TTTCTATACACAACAGATTTTATCAATTTATAACCGTTTTGGGCGTCTACTATATGGTAA
TCCGGATACTGCTGTTGATGTACTCGAATATGTTGTATTTGAAAGACATATTTCCGATGA
ATATGGTACATGGAGATTACACGGTAAAGTCTCTCGTCCAAACTCTACAGTAAACTACAC
CTATATACCTACTCAACGGTTATTCCCAGTTAATTCATCAACAACATCGGAATCAAATAA
ATTGATCTCAAATAGTCGAAATGACGTTGATAATCCAATATCACTAAACAGTTTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5580#0      TTGGATTATGTGGTGGAGAAGTGTCACAGTGTTCAGCCATAAATATATTTTTGAGTTCCA 60
consensus_5580#1      ------------------------------------------------------------
                                                                                  

consensus_5580#0      CAGTAATGTCAGATTTATTAGACATAAACCATGGGTGCCTAAATTCAGGCTTATCCGTCA 120
consensus_5580#1      ------------------------------------------------------------
                                                                                  

consensus_5580#0      GATGCAACCGTGGGATCCACCAGTAGATCTCAGCAACGACAAAGCTAATGAGAATGAAAG 180
consensus_5580#1      ------------------ACAAATACGCTGCAACGAGCTTTTATCTAAAGGCAATGTTTA 42
                                        ** * **     ** * *      * **** *  ****    

consensus_5580#0      CACATCAGATTTACGTAGAAGATTACGTAGAAATGGAATGTTACCTCCCCTATTATT-TT 239
consensus_5580#1      CGC-TCAAGTTACAGTT--CGTTTCTATACACAACAGATTTTATCAATT-TATAACCGTT 98
                      * * ***  **   **    * **   ** * *    ** *** *     *** *   **

consensus_5580#0      ATGATCGTCCAATAAATATTGGACATACAGGAACTATATTTGATCCGTATATCCCTCCTG 299
consensus_5580#1      TTGGGCGTCTACTATA---TGGTAATCCGGATACTGCTGTTGATGTACTCGAATATGTTG 155
                       **  **** * ** *   ***  ** * *  ***    *****           *  **

consensus_5580#0      ATGGTGATGGTCAAAGTTCATTACTATCAACAAAGAGACTGGCTCTTTTAAAAGATAATC 359
consensus_5580#1      TATTTGAAAGACATATTTC----CGATGAATATGGTACATGGAGATTACACGGTAAAGTC 211
                          ***  * ** * ***    * ** ** *  *    ***   **  *    * * **

consensus_5580#0      TCCTTAATAAGGGAAAAAACTATAAGGATTTATCGCTGCTAAAATCACATGAACCATCAT 419
consensus_5580#1      TCTC------GTCCAAACTCTACAGTAAACTA-CACCTATATACCTAC-----TCAACGG 259
                      **        *   ***  *** *   *  ** * *   ** *   **      ** *  

consensus_5580#0      TTAATTCCAAACGATTCACTATTGAAGCTGAAAATATTTATGTTGAGGCTCATGATTTAT 479
consensus_5580#1      TTATTCCCAGTTAATTCATCAACAACATCGGAATCAAATAAATTGATCTCAAATAGTCGA 319
                      *** * ***    *****  *   *    * **  *  **  ****     *  * *   

consensus_5580#0      TACAAAATTATCGTCAAAATGAATCCCGATTATTTGAACTAGTTACAGAAAAAGCACTAG 539
consensus_5580#1      AATGACGTTGATAATCCAATATCACTAAACAGTTTGA----------------------- 356
                       *  *  **        ***    *   *   *****                       

consensus_5580#0      TAGATATGACTGCTGACCTAAAACTTCGAACTCTACAATGGAAGTTTGTGGGTAACATTG 599
consensus_5580#1      ------------------------------------------------------------
                                                                                  

consensus_5580#0      AGCCACCCAGAGTTGTACAAATACCGCTGCACGAGCTTTTATCTAAAGGCAA 651
consensus_5580#1      ----------------------------------------------------