cluster # 559

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Schistosoma mansoni
cluster # 559 cluster # 559 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_559#0 length = 469 sequences # 1

consensus_559#1 length = 347 sequences # 1

consensusID : consensus_559#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 469
fasta sequence

                              [GGGTCCGCCAACTAGGACGGAGTATCGTGTTATTGTTGAGAATCTCTCGTCGCGTGTGAGCTGGCAGTTACCGCTCGTTGACGTTCGGTCGTTTCGGGTGGCGTAGGACGCGTAGGATTGGTCGTTTTCCATGCCATGGTCAGTCGCCCAGGGTTGTTTCTGGTCGCGCCGTTCAACGGTCGTCCGGCCGAGCATGTGGTAACGTGGTCTCGTACTGTGGTCAGATCAAAACGCGAGGTAAATTGCTCGCGCGTTTTTAAGTACTAGGCTAGCTTAACCCAAATTAGTAGTATATATTAGCTTATTATACAGGGCACGGTTTTTCAGTTGTTTATTCTTTTTTACAGGATCTCAAAGATTTGATGCGTAAGGCTGGAGAAGTTACTTATGCGGACGCACACAAGTCAGCTAAGAACGACGGGTAAGTTGTGCAGTTTTCCGTAACTTCCATTCTAGCATTGTTGAGTTT]

[+] EMBL CD129166             [GGGTCCGCCAACTAGGACGGAGTATCGTGTTATTGTTGAGAATCTCTCGTCGCGTGTGAGCTGGCAGTTACCGCTCGTTGACGTTCGGTCGTTTCGGGTGGCGTAGGACGCGTAGGATTGGTCGTTTTCCATGCCATGGTCAGTCGCCCAGGGTTGTTTCTGGTCGCGCCGTTCAACGGTCGTCCGGCCGAGCATGTGGTAACGTGGTCTCGTACTGTGGTCAGATCAAAACGCGAGGTAAATTGCTCGCGCGTTTTTAAGTACTAGGCTAGCTTAACCCAAATTAGTAGTATATATTAGCTTATTATACAGGGCACGGTTTTTCAGTTGTTTATTCTTTTTTACAGGATCTCAAAGATTTGATGCGTAAGGCTGGAGAAGTTACTTATGCGGACGCACACAAGTCAGCTAAGAACGACGGGTAAGTTGTGCAGTTTTCCGTAACTTCCATTCTAGCATTGTTGAGTTT]




>consensus_559#0
GGGTCCGCCAACTAGGACGGAGTATCGTGTTATTGTTGAGAATCTCTCGTCGCGTGTGAG
CTGGCAGTTACCGCTCGTTGACGTTCGGTCGTTTCGGGTGGCGTAGGACGCGTAGGATTG
GTCGTTTTCCATGCCATGGTCAGTCGCCCAGGGTTGTTTCTGGTCGCGCCGTTCAACGGT
CGTCCGGCCGAGCATGTGGTAACGTGGTCTCGTACTGTGGTCAGATCAAAACGCGAGGTA
AATTGCTCGCGCGTTTTTAAGTACTAGGCTAGCTTAACCCAAATTAGTAGTATATATTAG
CTTATTATACAGGGCACGGTTTTTCAGTTGTTTATTCTTTTTTACAGGATCTCAAAGATT
TGATGCGTAAGGCTGGAGAAGTTACTTATGCGGACGCACACAAGTCAGCTAAGAACGACG
GGTAAGTTGTGCAGTTTTCCGTAACTTCCATTCTAGCATTGTTGAGTTT

consensusID : consensus_559#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 347
fasta sequence

                              [CGTCCCATTACATCTTCATATCCTGTGTTGTCCAATTCGACTTTAGCGTTTTGACCTCCCATCAAGATGGTCAGTTCATTTTTTAAGTACATCATTACGATCGATTGCAGTCTCCTGTCAAACTGATCTTTATCATCGTCATTGCTATGATTGGCGGGCGCATAACATTGGATAACATTCATTGTGATCCCCTCCTTCTTTGTTTTGAATGATGCTTTGATTATTTTGGATCAGTCAGATTCTCATCCTAGAAGTGCATTTCGTGCTTCTTTGAACAGCATTAGAGCAACAATCTTCGTGTGTGGAGTATTTTCGTCTTCGTGACCAGAGTACAGCAGCAACTCTCC]

[+] EMBL CD140964             [CGTCCCATTACATCTTCATATCCTGTGTTGTCCAATTCGACTTTAGCGTTTTGACCTCCCATCAAGATGGTCAGTTCATTTTTTAAGTACATCATTACGATCGATTGCAGTCTCCTGTCAAACTGATCTTTATCATCGTCATTGCTATGATTGGCGGGCGCATAACATTGGATAACATTCATTGTGATCCCCTCCTTCTTTGTTTTGAATGATGCTTTGATTATTTTGGATCAGTCAGATTCTCATCCTAGAAGTGCATTTCGTGCTTCTTTGAACAGCATTAGAGCAACAATCTTCGTGTGTGGAGTATTTTCGTCTTCGTGACCAGAGTACAGCAGCAACTCTCC]




>consensus_559#1
CGTCCCATTACATCTTCATATCCTGTGTTGTCCAATTCGACTTTAGCGTTTTGACCTCCC
ATCAAGATGGTCAGTTCATTTTTTAAGTACATCATTACGATCGATTGCAGTCTCCTGTCA
AACTGATCTTTATCATCGTCATTGCTATGATTGGCGGGCGCATAACATTGGATAACATTC
ATTGTGATCCCCTCCTTCTTTGTTTTGAATGATGCTTTGATTATTTTGGATCAGTCAGAT
TCTCATCCTAGAAGTGCATTTCGTGCTTCTTTGAACAGCATTAGAGCAACAATCTTCGTG
TGTGGAGTATTTTCGTCTTCGTGACCAGAGTACAGCAGCAACTCTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_559#0      GGGTCCGCCAACTAGGACGGAGTATCGTGTTATTGT-TGAGAATCTCTCGTCGCGTGTGA 59
consensus_559#1      -------------------------CGTCCCATTACATCTTCATATCCTGTGTTGTCCAA 35
                                              ***   ***   *    ** **  **   **   *

consensus_559#0      GCTGGCAGTTACCGCTCGTTGACGTTCGGTCGTTTCGGGTGGCGTAGGACGCGTAGGATT 119
consensus_559#1      TTCGACT-TTAGCGTT--TTGACCTCCCATCAAGATGGTCAGTTCATTTTTTAAGTACAT 92
                        * *  *** ** *  ***** * *  **     **   *   *             *

consensus_559#0      GGTCGTTTTCCATGCCATGGTCAGTCGCCCAGGGTTGTTTCTGGTCGCGCCGTT-CAACG 178
consensus_559#1      CATTACGATCGAT--TGCAGTCTCCTGTC-AAACTGATCTTTATCATCGTCATTGCTATG 149
                       *     ** **      ***    * * *   *  * * *     ** * ** * * *

consensus_559#0      GTCGTCCGGCCGAGCATGTGGTAACGTGGTCTCGTACTGTGGTCAGATCAAAACGCGAGG 238
consensus_559#1      ATTGGCGGGC---GCATAACATTGGATAACATT-CATTGTGATCCCCTCCTTCTTTGTTT 205
                      * * * ***   ****    *    *    *   * **** **   **       *   

consensus_559#0      TAAATTGCTCGCGCGTTTTTAAGTACTAGGCTAGCTTAACCCAAATTAGTAGTATATATT 298
consensus_559#1      TGAATGATGCTTTGATTATTTTGGATCAGTCAGATT---CTCATCCTAGAAGTGCATTTC 262
                     * ***    *     ** **  * *  ** *    *   * **   *** ***  ** * 

consensus_559#0      AGCTTATTATACAGGGCACGGTTTTTCAGTTGTTTATTCTTTTTTACAGGATCTCAAAGA 358
consensus_559#1      GTGCTTCTTTGAACAGCA------TTAGAGCAACAATCTTCGTGTGTGGAGTATTTTCGT 316
                         *  * *  *  ***      **         **  *  * *   *  * *    * 

consensus_559#0      TTTGATGCGTAAGGCTGGAGAAGTTACTTATGCGGACGCACACAAGTCAGCTAAGAACGA 418
consensus_559#1      CTTCGTGACCAGAG-TACAGCAGCAACTCTCC---------------------------- 347
                      **  **   *  * *  ** **  ***                                

consensus_559#0      CGGGTAAGTTGTGCAGTTTTCCGTAACTTCCATTCTAGCATTGTTGAGTTT 469
consensus_559#1      ---------------------------------------------------