cluster # 5591

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Schistosoma mansoni
cluster # 5591 cluster # 5591 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5591#0 length = 506 sequences # 1

consensus_5591#1 length = 465 sequences # 2

consensusID : consensus_5591#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 506
fasta sequence

                              [ACGATGATGATGATGATGATGATGGAGGAGGAGGTGGAAGATTTAATTTTTTATTCAGTTGTATACCTTCTTCTTTTGTAGAATCACTAGTGATTGGTTGATTTCCATTTAAATAATGATTGATACATGTTGTTAATAAGTGATCCAGTATTATCAAAATTCTTTCGTGTTTGTAGTGATCTACTACCAAGGATGTTGTATTTGTCATCTACGAAAACAAATAATACAGATAAACAGAAGCAAAATCATGTTACATTTCGTGATGATACTGTTGTAATACAATCTAATAATCTTGATTTATCATCATCATCTTCAAAACGTATCAGCGTTACAGATGTCAGTATTTCTAGTAACAGTATACTACACAATGCAACATCCATTCATTTACACTTATGTAATGCTATGAAAGCATTATTATTAATTAGTCCAACTGGATTAGTACAATTTCTACCAATTATTCTCAATCAATTCATGGAGATTATTATTCTTAGTGCTGAAACAAGTGC]

[+] EMBL CD153255             [ACGATGATGATGATGATGATGATGGAGGAGGAGGTGGAAGATTTAATTTTTTATTCAGTTGTATACCTTCTTCTTTTGTAGAATCACTAGTGATTGGTTGATTTCCATTTAAATAATGATTGATACATGTTGTTAATAAGTGATCCAGTATTATCAAAATTCTTTCGTGTTTGTAGTGATCTACTACCAAGGATGTTGTATTTGTCATCTACGAAAACAAATAATACAGATAAACAGAAGCAAAATCATGTTACATTTCGTGATGATACTGTTGTAATACAATCTAATAATCTTGATTTATCATCATCATCTTCAAAACGTATCAGCGTTACAGATGTCAGTATTTCTAGTAACAGTATACTACACAATGCAACATCCATTCATTTACACTTATGTAATGCTATGAAAGCATTATTATTAATTAGTCCAACTGGATTAGTACAATTTCTACCAATTATTCTCAATCAATTCATGGAGATTATTATTCTTAGTGCTGAAACAAGTGC]




>consensus_5591#0
ACGATGATGATGATGATGATGATGGAGGAGGAGGTGGAAGATTTAATTTTTTATTCAGTT
GTATACCTTCTTCTTTTGTAGAATCACTAGTGATTGGTTGATTTCCATTTAAATAATGAT
TGATACATGTTGTTAATAAGTGATCCAGTATTATCAAAATTCTTTCGTGTTTGTAGTGAT
CTACTACCAAGGATGTTGTATTTGTCATCTACGAAAACAAATAATACAGATAAACAGAAG
CAAAATCATGTTACATTTCGTGATGATACTGTTGTAATACAATCTAATAATCTTGATTTA
TCATCATCATCTTCAAAACGTATCAGCGTTACAGATGTCAGTATTTCTAGTAACAGTATA
CTACACAATGCAACATCCATTCATTTACACTTATGTAATGCTATGAAAGCATTATTATTA
ATTAGTCCAACTGGATTAGTACAATTTCTACCAATTATTCTCAATCAATTCATGGAGATT
ATTATTCTTAGTGCTGAAACAAGTGC

consensusID : consensus_5591#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 465
fasta sequence

                              [TATGAATAGATGTATCAATATATTATTAGGACAATGAGTATCGGACAAGAGTAGAATTAAACCACGTATAATAGAATGATGAATAGATGATAAAGGGAAATATTGATTAATGATAGATTGTGATATGGATAGTTTATTAGGTCTTCTTGTTGTAGATGGTGACGATGATGATGATGATGATGATGGAGGAGGAGGTGGAAGATTTAA-TTTTTTATTCAGTTGTATACCTTCTTCTTTTGTAGAATCACTAGTGATTGGTTGATTTCCATTTAAATAATGATTGATACATGTTGTTAATAAGTGATCCGGATTGAATACAAACTCCACATAAGTTTTCAACAAATTGTGTTTTACACGTTCACCACTTGATATGCTTGAATCAACTGCACCATCTAGACAAGTTGTATCATTTGTTGACTTGATTGGATAATAAGAATTATCATTTGGAATTTGTGCATTCAATTC]

[-] EMBL CD098182             [TATGAATAGATGTATCAATATATTATTAGGACAATGAGTATCGGACAAGAGTAGAATTAAACCACGTATAATAGAATGATGAATAGATGATAAAGGGAAATATTGATTAATGATAGATTGTGATATGGATAGTTTATTAGGTCTTCTTGTTGTAGATGGTGACGATGATGATGATGATGATGATGGAGGAGGAGGTGGAAGATTTAA TTTTTTATTCAGTTGTATACCTTCTTCTTTTGTAGAATCACTAGTGATTGGTTGATTTCCATTTAAATAATGATTGATACATGTTGTTAATAAGTGATCCGGATTGAATACAAACTCCACATAAGTTTTCAACAAATTGTGTTTTACACGTTCACCACTTGATATGCTTGAATCAACTGCACCATCTAGACAAGTTGTATCATTTGTTGACTTGATTGGATAATAAGAATTATCATTTGGAATTTGTGCATTCAATTC]
[+] EMBL CD196755             [                                                            ACCACGTATAATAGAATGATGAATAGATGATAGAGGGAAATATTGATTAATGATAGATTGTGATATGGATAGTTTATTAGGTCTTCTTGTTGTAGATGGTGACGATGATGATGATGATGATGATGGAGGAGGAGGTGGAAGATTTAATTTTTTTATTCAGTTGTATACCTTCTTCTTTTGTAGAATCACTAGTGATTGGTTGATTTCCATTTAAATAATGATTGATACATGTTGTTAATAAGTGATCCGGATTGAATACAAACTCCACATAAGTTTTCAACAAATTGTGTTTTACACGTTCACCACTTGATATGCTTGAATCAACTGCACCATCTAGACAAGTTGTATCATTTGTTGACTTGATTGGATAA                                   ]




>consensus_5591#1
TATGAATAGATGTATCAATATATTATTAGGACAATGAGTATCGGACAAGAGTAGAATTAA
ACCACGTATAATAGAATGATGAATAGATGATAAAGGGAAATATTGATTAATGATAGATTG
TGATATGGATAGTTTATTAGGTCTTCTTGTTGTAGATGGTGACGATGATGATGATGATGA
TGATGGAGGAGGAGGTGGAAGATTTAATTTTTTATTCAGTTGTATACCTTCTTCTTTTGT
AGAATCACTAGTGATTGGTTGATTTCCATTTAAATAATGATTGATACATGTTGTTAATAA
GTGATCCGGATTGAATACAAACTCCACATAAGTTTTCAACAAATTGTGTTTTACACGTTC
ACCACTTGATATGCTTGAATCAACTGCACCATCTAGACAAGTTGTATCATTTGTTGACTT
GATTGGATAATAAGAATTATCATTTGGAATTTGTGCATTCAATTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5591#0      ACGATGATGATGATGATGATGATGGAGGAGGAGGTGGAAGATTTAATTTTTTATTCAGTT 60
consensus_5591#1      ----------------------------TATGAATAGATGTATCAATATATTATTAGGAC 32
                                                        * ** *  * *** * *****  *  

consensus_5591#0      G-TATACCTTCTTCTTTTGTAGAATCAC-TAGTGATTGGTTGATTTCCATTTAAATAATG 118
consensus_5591#1      AATGAGTATCGGACAAGAGTAGAATTAAACCACGTATAATAGAATGATGAATAGATGATA 92
                        *     *    *    ******* *      *  *  * ** *      ** ** ** 

consensus_5591#0      ATTGATACATGTTG-TTAATAAGTGATCCAGTATTATCAAAATTCTTTCGTGTTTGTAGT 177
consensus_5591#1      AA-GGGAAATATTGATTAATGATAGATT--GTGATATGGATAGTTTATTAGGTCTTC--- 146
                      *  *  * ** *** ***** *  ***   **  ***  * * * * *   ** *     

consensus_5591#0      GATCTACTACCAAGGATGTTGTATTTGTCATCTACGAAAACAAATAATACAGATAAACAG 237
consensus_5591#1      ---TTGTTGTAGATGGTGACGATGATGATGATGATGATGATGGAGGA-GGAGGTGGA-AG 201
                          *  *    * * **  *    **      * **  *   *  *   ** *  * **

consensus_5591#0      AAGCAAAATCATGTTACATTTCGTGA-TGATACTGTTGTAATACAATCTAATAATCTTGA 296
consensus_5591#1      ATTTAATTTTTTATTCAGTTGTATACCTTCTTCTTTTGTAGAATCA-CTAGTGA--TTGG 258
                      *   **  *  * **   **   *   *  * ** *****  *  * *** * *  *** 

consensus_5591#0      TTTATCATCATCATCTTCAAAACGTATCAGCGTTACAGATGTCAGTATTTCTAGT--AAC 354
consensus_5591#1      TTGATTTCCATTTAAATAATGATTGATACATGTTGTTAATA--AGTGATCCGGATTGAAT 316
                      ** **   ***     * *  *   **    ***    **   ***  * *   *  ** 

consensus_5591#0      A-GTATACTACACAATGCAACATCCATTCAT-TTACACTTATGTAATGCTATGAAAGCAT 412
consensus_5591#1      ACAAACTCCACATAAGTTTTCAACAAATTGTGTTTTACACGTTCACCACTTGATATGCTT 376
                      *   *  * *** **     ** * * *  * **  **   *  *   **    * ** *

consensus_5591#0      TATTATTAATTAGTCCAACTGGATTAGTACAATTTCTACCAATTATT--CTCAATCAATT 470
consensus_5591#1      GA--ATCAACTGCACCATCTAGA------CAAGTTGTATCATTTGTTGACTTGATTGGAT 428
                       *  ** ** *   *** ** **      *** ** ** ** ** **  **  **    *

consensus_5591#0      CATGGAGATTATTATTCTTAGTGC-TGAAACAAGTGC 506
consensus_5591#1      AATAAGAATTATCATTTGGAATTTGTGCATTCAATTC 465
                       **    ***** ***   * *   ** *   * * *