These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5591#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence [ACGATGATGATGATGATGATGATGGAGGAGGAGGTGGAAGATTTAATTTTTTATTCAGTTGTATACCTTCTTCTTTTGTAGAATCACTAGTGATTGGTTGATTTCCATTTAAATAATGATTGATACATGTTGTTAATAAGTGATCCAGTATTATCAAAATTCTTTCGTGTTTGTAGTGATCTACTACCAAGGATGTTGTATTTGTCATCTACGAAAACAAATAATACAGATAAACAGAAGCAAAATCATGTTACATTTCGTGATGATACTGTTGTAATACAATCTAATAATCTTGATTTATCATCATCATCTTCAAAACGTATCAGCGTTACAGATGTCAGTATTTCTAGTAACAGTATACTACACAATGCAACATCCATTCATTTACACTTATGTAATGCTATGAAAGCATTATTATTAATTAGTCCAACTGGATTAGTACAATTTCTACCAATTATTCTCAATCAATTCATGGAGATTATTATTCTTAGTGCTGAAACAAGTGC] [+] EMBL CD153255 [ACGATGATGATGATGATGATGATGGAGGAGGAGGTGGAAGATTTAATTTTTTATTCAGTTGTATACCTTCTTCTTTTGTAGAATCACTAGTGATTGGTTGATTTCCATTTAAATAATGATTGATACATGTTGTTAATAAGTGATCCAGTATTATCAAAATTCTTTCGTGTTTGTAGTGATCTACTACCAAGGATGTTGTATTTGTCATCTACGAAAACAAATAATACAGATAAACAGAAGCAAAATCATGTTACATTTCGTGATGATACTGTTGTAATACAATCTAATAATCTTGATTTATCATCATCATCTTCAAAACGTATCAGCGTTACAGATGTCAGTATTTCTAGTAACAGTATACTACACAATGCAACATCCATTCATTTACACTTATGTAATGCTATGAAAGCATTATTATTAATTAGTCCAACTGGATTAGTACAATTTCTACCAATTATTCTCAATCAATTCATGGAGATTATTATTCTTAGTGCTGAAACAAGTGC] consensusID : consensus_5591#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 465 fasta sequence [TATGAATAGATGTATCAATATATTATTAGGACAATGAGTATCGGACAAGAGTAGAATTAAACCACGTATAATAGAATGATGAATAGATGATAAAGGGAAATATTGATTAATGATAGATTGTGATATGGATAGTTTATTAGGTCTTCTTGTTGTAGATGGTGACGATGATGATGATGATGATGATGGAGGAGGAGGTGGAAGATTTAA-TTTTTTATTCAGTTGTATACCTTCTTCTTTTGTAGAATCACTAGTGATTGGTTGATTTCCATTTAAATAATGATTGATACATGTTGTTAATAAGTGATCCGGATTGAATACAAACTCCACATAAGTTTTCAACAAATTGTGTTTTACACGTTCACCACTTGATATGCTTGAATCAACTGCACCATCTAGACAAGTTGTATCATTTGTTGACTTGATTGGATAATAAGAATTATCATTTGGAATTTGTGCATTCAATTC] [-] EMBL CD098182 [TATGAATAGATGTATCAATATATTATTAGGACAATGAGTATCGGACAAGAGTAGAATTAAACCACGTATAATAGAATGATGAATAGATGATAAAGGGAAATATTGATTAATGATAGATTGTGATATGGATAGTTTATTAGGTCTTCTTGTTGTAGATGGTGACGATGATGATGATGATGATGATGGAGGAGGAGGTGGAAGATTTAA TTTTTTATTCAGTTGTATACCTTCTTCTTTTGTAGAATCACTAGTGATTGGTTGATTTCCATTTAAATAATGATTGATACATGTTGTTAATAAGTGATCCGGATTGAATACAAACTCCACATAAGTTTTCAACAAATTGTGTTTTACACGTTCACCACTTGATATGCTTGAATCAACTGCACCATCTAGACAAGTTGTATCATTTGTTGACTTGATTGGATAATAAGAATTATCATTTGGAATTTGTGCATTCAATTC] [+] EMBL CD196755 [ ACCACGTATAATAGAATGATGAATAGATGATAGAGGGAAATATTGATTAATGATAGATTGTGATATGGATAGTTTATTAGGTCTTCTTGTTGTAGATGGTGACGATGATGATGATGATGATGATGGAGGAGGAGGTGGAAGATTTAATTTTTTTATTCAGTTGTATACCTTCTTCTTTTGTAGAATCACTAGTGATTGGTTGATTTCCATTTAAATAATGATTGATACATGTTGTTAATAAGTGATCCGGATTGAATACAAACTCCACATAAGTTTTCAACAAATTGTGTTTTACACGTTCACCACTTGATATGCTTGAATCAACTGCACCATCTAGACAAGTTGTATCATTTGTTGACTTGATTGGATAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5591#0 ACGATGATGATGATGATGATGATGGAGGAGGAGGTGGAAGATTTAATTTTTTATTCAGTT 60 consensus_5591#1 ----------------------------TATGAATAGATGTATCAATATATTATTAGGAC 32 * ** * * *** * ***** * consensus_5591#0 G-TATACCTTCTTCTTTTGTAGAATCAC-TAGTGATTGGTTGATTTCCATTTAAATAATG 118 consensus_5591#1 AATGAGTATCGGACAAGAGTAGAATTAAACCACGTATAATAGAATGATGAATAGATGATA 92 * * * ******* * * * * ** * ** ** ** consensus_5591#0 ATTGATACATGTTG-TTAATAAGTGATCCAGTATTATCAAAATTCTTTCGTGTTTGTAGT 177 consensus_5591#1 AA-GGGAAATATTGATTAATGATAGATT--GTGATATGGATAGTTTATTAGGTCTTC--- 146 * * * ** *** ***** * *** ** *** * * * * * ** * consensus_5591#0 GATCTACTACCAAGGATGTTGTATTTGTCATCTACGAAAACAAATAATACAGATAAACAG 237 consensus_5591#1 ---TTGTTGTAGATGGTGACGATGATGATGATGATGATGATGGAGGA-GGAGGTGGA-AG 201 * * * * ** * ** * ** * * * ** * * ** consensus_5591#0 AAGCAAAATCATGTTACATTTCGTGA-TGATACTGTTGTAATACAATCTAATAATCTTGA 296 consensus_5591#1 ATTTAATTTTTTATTCAGTTGTATACCTTCTTCTTTTGTAGAATCA-CTAGTGA--TTGG 258 * ** * * ** ** * * * ** ***** * * *** * * *** consensus_5591#0 TTTATCATCATCATCTTCAAAACGTATCAGCGTTACAGATGTCAGTATTTCTAGT--AAC 354 consensus_5591#1 TTGATTTCCATTTAAATAATGATTGATACATGTTGTTAATA--AGTGATCCGGATTGAAT 316 ** ** *** * * * ** *** ** *** * * * ** consensus_5591#0 A-GTATACTACACAATGCAACATCCATTCAT-TTACACTTATGTAATGCTATGAAAGCAT 412 consensus_5591#1 ACAAACTCCACATAAGTTTTCAACAAATTGTGTTTTACACGTTCACCACTTGATATGCTT 376 * * * *** ** ** * * * * ** ** * * ** * ** * consensus_5591#0 TATTATTAATTAGTCCAACTGGATTAGTACAATTTCTACCAATTATT--CTCAATCAATT 470 consensus_5591#1 GA--ATCAACTGCACCATCTAGA------CAAGTTGTATCATTTGTTGACTTGATTGGAT 428 * ** ** * *** ** ** *** ** ** ** ** ** ** ** * consensus_5591#0 CATGGAGATTATTATTCTTAGTGC-TGAAACAAGTGC 506 consensus_5591#1 AATAAGAATTATCATTTGGAATTTGTGCATTCAATTC 465 ** ***** *** * * ** * * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||