cluster # 5594

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Schistosoma mansoni
cluster # 5594 cluster # 5594 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5594#0 length = 392 sequences # 1

consensus_5594#1 length = 383 sequences # 2

consensusID : consensus_5594#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 392
fasta sequence

                              [CTTTCGACGGTTCAAGGTCGGATGCCTGGTGTAGTTTAAGAGGTTATTTATTTCATCTCTTGACAAACTGGTTGGTACCTCAATTTACAGTCACTCATTACACACTGCACAATGGATGAGGAAGAACTTTCTTTCATACCCCACAGCAAATCTTACGTGTATGTTTCGGTGGAAGCCCCCAATAAAACTGTTTGACTGCTCGTCTGAATACCTCCAAAATTGTCCTGTTGACTACAGTCTTCTGGAAAACCCCTTTAACTCCAAAGCAGAAGTGTATGATCCGAAAAAGGAAGCAAAATTATGGCAAGGATTGGGTATATTAACAACTAATACTAGTGAGATCGATAGTGAAAAGCCGGCGAGTGAGAACCCTTATTACTTAACATCAGTAC]

[+] EMBL CD098135             [CTTTCGACGGTTCAAGGTCGGATGCCTGGTGTAGTTTAAGAGGTTATTTATTTCATCTCTTGACAAACTGGTTGGTACCTCAATTTACAGTCACTCATTACACACTGCACAATGGATGAGGAAGAACTTTCTTTCATACCCCACAGCAAATCTTACGTGTATGTTTCGGTGGAAGCCCCCAATAAAACTGTTTGACTGCTCGTCTGAATACCTCCAAAATTGTCCTGTTGACTACAGTCTTCTGGAAAACCCCTTTAACTCCAAAGCAGAAGTGTATGATCCGAAAAAGGAAGCAAAATTATGGCAAGGATTGGGTATATTAACAACTAATACTAGTGAGATCGATAGTGAAAAGCCGGCGAGTGAGAACCCTTATTACTTAACATCAGTAC]




>consensus_5594#0
CTTTCGACGGTTCAAGGTCGGATGCCTGGTGTAGTTTAAGAGGTTATTTATTTCATCTCT
TGACAAACTGGTTGGTACCTCAATTTACAGTCACTCATTACACACTGCACAATGGATGAG
GAAGAACTTTCTTTCATACCCCACAGCAAATCTTACGTGTATGTTTCGGTGGAAGCCCCC
AATAAAACTGTTTGACTGCTCGTCTGAATACCTCCAAAATTGTCCTGTTGACTACAGTCT
TCTGGAAAACCCCTTTAACTCCAAAGCAGAAGTGTATGATCCGAAAAAGGAAGCAAAATT
ATGGCAAGGATTGGGTATATTAACAACTAATACTAGTGAGATCGATAGTGAAAAGCCGGC
GAGTGAGAACCCTTATTACTTAACATCAGTAC

consensusID : consensus_5594#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 383
fasta sequence

                              [CTTTCGACGGTTCAAGGTCGGATGCCTGGTGTAGTTTAAGAGGTTATTTATTTCATCTCTTGACAAACTGGTTGGTACCTCAATTTACAGTCACTCATTACACACTGCACAATGGATGAGGAAGAACTTTATTTCATACCCCACAGCAAATCTTACGTGTGGAAGCCCCCAATAAAACTGTTTGACTGCTCGTCTGAATACCTCCAAAATTGTCCTGTTGACTACAGTCTTCTGGAAAACCCCTTTAACTCCAAACCAGAAGTGTATGATCCGAAAAAGGAAGCAAAATTATGGCAAGGATTGGGTATATTAACAACTAAATACTAGTGAGATCGATAGTGAAAAGCCGCCGAGTGAGAACCCTTATTACTTAACATCAGTAC]

[+] EMBL CD098099             [CTTTCGACGGTTCAAGGTCGGATGCCTGGTGTAGTTTAAGAGGTTATTTATTTCATCTCTTGACAAACTGGTTGGTACCTCAATTTACAGTCACTCATTACACACTGCACAATGGATGAGGAAGAACTTTATTTCATACCCCACAGCAAATCTTACGTGTGGAAGCCCCCAATAAAACTGTTTGACTGCTCGTCTGAATACCTCCAAAATTGTCCTGTTGACTACAGTCTTCTGGAAAACCCCTTTAACTCCAAACCAGAAGTGTATGATCCGAAAAAGGAAGCAAAATTATGGCAAGGATTGGGTATATTAACAACTAAATACTAGTGAGATCGATAGTGAAAAGCCGCCGAGTGAGAACCCTTATTACTTAACATCAGTAC]
[+] EMBL CD131973             [                                      AGAGGTTATTTATTTCATCTCTTGACAAACTGGTTGGTACCTCAATTTACAGTCACTCATTACACACTGCACAATGGATGAGGAAGAACTTTCTTTCATACCCCACAGCAAATCTTACGTGTGGAAGCCCCCAATAAAACTGTTTGACTGCTCGTCTGAATACCTCC                                                                                                                                                                                  ]




>consensus_5594#1
CTTTCGACGGTTCAAGGTCGGATGCCTGGTGTAGTTTAAGAGGTTATTTATTTCATCTCT
TGACAAACTGGTTGGTACCTCAATTTACAGTCACTCATTACACACTGCACAATGGATGAG
GAAGAACTTTATTTCATACCCCACAGCAAATCTTACGTGTGGAAGCCCCCAATAAAACTG
TTTGACTGCTCGTCTGAATACCTCCAAAATTGTCCTGTTGACTACAGTCTTCTGGAAAAC
CCCTTTAACTCCAAACCAGAAGTGTATGATCCGAAAAAGGAAGCAAAATTATGGCAAGGA
TTGGGTATATTAACAACTAAATACTAGTGAGATCGATAGTGAAAAGCCGCCGAGTGAGAA
CCCTTATTACTTAACATCAGTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5594#0      CTTTCGACGGTTCAAGGTCGGATGCCTGGTGTAGTTTAAGAGGTTATTTATTTCATCTCT 60
consensus_5594#1      CTTTCGACGGTTCAAGGTCGGATGCCTGGTGTAGTTTAAGAGGTTATTTATTTCATCTCT 60
                      ************************************************************

consensus_5594#0      TGACAAACTGGTTGGTACCTCAATTTACAGTCACTCATTACACACTGCACAATGGATGAG 120
consensus_5594#1      TGACAAACTGGTTGGTACCTCAATTTACAGTCACTCATTACACACTGCACAATGGATGAG 120
                      ************************************************************

consensus_5594#0      GAAGAACTTTCTTTCATACCCCACAGCAAATCTTACGTGTATGTTTCGGTGGAAGCCCCC 180
consensus_5594#1      GAAGAACTTTATTTCATACCCCACAGCAAATCTTACGTGT----------GGAAGCCCCC 170
                      ********** *****************************          **********

consensus_5594#0      AATAAAACTGTTTGACTGCTCGTCTGAATACCTCCAAAATTGTCCTGTTGACTACAGTCT 240
consensus_5594#1      AATAAAACTGTTTGACTGCTCGTCTGAATACCTCCAAAATTGTCCTGTTGACTACAGTCT 230
                      ************************************************************

consensus_5594#0      TCTGGAAAACCCCTTTAACTCCAAAGCAGAAGTGTATGATCCGAAAAAGGAAGCAAAATT 300
consensus_5594#1      TCTGGAAAACCCCTTTAACTCCAAACCAGAAGTGTATGATCCGAAAAAGGAAGCAAAATT 290
                      ************************* **********************************

consensus_5594#0      ATGGCAAGGATTGGGTATATTAACAACTAA-TACTAGTGAGATCGATAGTGAAAAGCCGG 359
consensus_5594#1      ATGGCAAGGATTGGGTATATTAACAACTAAATACTAGTGAGATCGATAGTGAAAAGCCGC 350
                      ****************************** **************************** 

consensus_5594#0      CGAGTGAGAACCCTTATTACTTAACATCAGTAC 392
consensus_5594#1      CGAGTGAGAACCCTTATTACTTAACATCAGTAC 383
                      *********************************