cluster # 5603

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Schistosoma mansoni
cluster # 5603 cluster # 5603 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5603#0 length = 380 sequences # 2

consensus_5603#1 length = 276 sequences # 1

consensusID : consensus_5603#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 380
fasta sequence

                              [TAGTGATACTGCTAATAATAATAGTGNCNCATATAAAATAATAGATTATAGGAGTTGTTTACTTATGTGAAGAAATAAATGAGTGACGCTTGATTCCAGAGGAGCTTGTTATCCAATAACAAAACAGTCGTGGGCGGCAAATATTAACTG-AAAAAAAGGGGAAGAGTGTAGGTTATAAGACC-AAAAAAATTCAAGTATGGATAGGTATGTGAATGTGGAAGACTTAAGTTGACGAATCCATCGGTTGACCGTTACCTAATGCATAACGTTGTGGTCACCCAAATGCATAGTTCACCAGCATCATTTACTGAAGCAATCATTGTAGGCAATACTAGAAGTAGATGTACTTACAGTGGAGCCAATATTTGTTACGGAAACAG]

[-] EMBL CD077958             [TAGTGATACTGCTAATAATAATAGTGNCNCATATAAAATAATAGATTATAGGAGTTGTTTACTTATGTGAAGAAATAAATGAGTGACGCTTGATTCCAGAGGAGCTTGTTATCCAATAACAAAACAGTCGTGGGCGGCAAATATTAACTG AAAAAAAGGGGAAGAGTGTAGGTTATAAGACC AAAAAAATTCAAGTATGGATAGGTATGTGAATGTGGAAGACTTAAGTTGACGAATCCATCGGTTGACCGTTACCTAATGCATAACGTTGTGGTCACCCA                                                                                                   ]
[+] EMBL CD063271             [                                                                                            ATTCCAGAGGAGCTTGTTATCCAATAACAAAACAGTCGTGGACGGCAAATATTAACTGAAAAAAAAGGGGAAGAGTGTAGGTTATAAGACCAAAAAAAATTCAAGTATGGATAGGTGTGTGAATGTGGAAGACTTAAGTTGACGAATCCATCGGTTGACCGTTACCTAATGCATAACGTTGTGGTC CCCAAATGCATAGTTCACCAGCATCATTTACTGAAGCAATCATTGTAGGCAATACTAGAAGTAGATGTACTTACAGTGGAGCCAATATTTGTTACGGAAACAG]




>consensus_5603#0
TAGTGATACTGCTAATAATAATAGTGNCNCATATAAAATAATAGATTATAGGAGTTGTTT
ACTTATGTGAAGAAATAAATGAGTGACGCTTGATTCCAGAGGAGCTTGTTATCCAATAAC
AAAACAGTCGTGGGCGGCAAATATTAACTGAAAAAAAGGGGAAGAGTGTAGGTTATAAGA
CCAAAAAAATTCAAGTATGGATAGGTATGTGAATGTGGAAGACTTAAGTTGACGAATCCA
TCGGTTGACCGTTACCTAATGCATAACGTTGTGGTCACCCAAATGCATAGTTCACCAGCA
TCATTTACTGAAGCAATCATTGTAGGCAATACTAGAAGTAGATGTACTTACAGTGGAGCC
AATATTTGTTACGGAAACAG

consensusID : consensus_5603#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 276
fasta sequence

                              [GACGCTTGATTCCAGAGGAGCTTGTTATCCAATAACAAAACAGTCGTGGACGGCAAATATTAACTGAAAAAAAGGGGAAGAGTGTAGGTTATAAGACCAAAAAAATTCAAGTATGGATAGGTATGTGAATGTGGAAGACTTAAGTTGACGAATCCATCGGTTGACCGTTACCTAATGCATAACGTTGTGGTCCCCAAATGCATAGTTCACCAGCATCATTTACTGAAGCAATCATTGTAGGCAATACTGGATTCCAATGAACACATGTCAAGTGGA]

[-] EMBL CD126258             [GACGCTTGATTCCAGAGGAGCTTGTTATCCAATAACAAAACAGTCGTGGACGGCAAATATTAACTGAAAAAAAGGGGAAGAGTGTAGGTTATAAGACCAAAAAAATTCAAGTATGGATAGGTATGTGAATGTGGAAGACTTAAGTTGACGAATCCATCGGTTGACCGTTACCTAATGCATAACGTTGTGGTCCCCAAATGCATAGTTCACCAGCATCATTTACTGAAGCAATCATTGTAGGCAATACTGGATTCCAATGAACACATGTCAAGTGGA]




>consensus_5603#1
GACGCTTGATTCCAGAGGAGCTTGTTATCCAATAACAAAACAGTCGTGGACGGCAAATAT
TAACTGAAAAAAAGGGGAAGAGTGTAGGTTATAAGACCAAAAAAATTCAAGTATGGATAG
GTATGTGAATGTGGAAGACTTAAGTTGACGAATCCATCGGTTGACCGTTACCTAATGCAT
AACGTTGTGGTCCCCAAATGCATAGTTCACCAGCATCATTTACTGAAGCAATCATTGTAG
GCAATACTGGATTCCAATGAACACATGTCAAGTGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5603#0      TAGTGATACTGCTAATAATAATAGTGNCNCATATAAAATAATAGATTATAGGAGTTGTTT 60
consensus_5603#1      ------------------------------------------------------------
                                                                                  

consensus_5603#0      ACTTATGTGAAGAAATAAATGAGTGACGCTTGATTCCAGAGGAGCTTGTTATCCAATAAC 120
consensus_5603#1      ------------------------GACGCTTGATTCCAGAGGAGCTTGTTATCCAATAAC 36
                                              ************************************

consensus_5603#0      AAAACAGTCGTGGGCGGCAAATATTAACTGAAAAAAAGGGGAAGAGTGTAGGTTATAAGA 180
consensus_5603#1      AAAACAGTCGTGGACGGCAAATATTAACTGAAAAAAAGGGGAAGAGTGTAGGTTATAAGA 96
                      ************* **********************************************

consensus_5603#0      CCAAAAAAATTCAAGTATGGATAGGTATGTGAATGTGGAAGACTTAAGTTGACGAATCCA 240
consensus_5603#1      CCAAAAAAATTCAAGTATGGATAGGTATGTGAATGTGGAAGACTTAAGTTGACGAATCCA 156
                      ************************************************************

consensus_5603#0      TCGGTTGACCGTTACCTAATGCATAACGTTGTGGTCACCCAAATGCATAGTTCACCAGCA 300
consensus_5603#1      TCGGTTGACCGTTACCTAATGCATAACGTTGTGGTC-CCCAAATGCATAGTTCACCAGCA 215
                      ************************************ ***********************

consensus_5603#0      TCATTTACTGAAGCAATCATTGTAGGCAATACTAGAAGTAGATGTACTTACAGTGGAGCC 360
consensus_5603#1      TCATTTACTGAAGCAATCATTGTAGGCAATACTGGATTCCAATGAACACAT-GTCAAGTG 274
                      ********************************* **     *** **  *  **  **  

consensus_5603#0      AATATTTGTTACGGAAACAG 380
consensus_5603#1      GA------------------ 276
                       *