These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5603#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 380 fasta sequence [TAGTGATACTGCTAATAATAATAGTGNCNCATATAAAATAATAGATTATAGGAGTTGTTTACTTATGTGAAGAAATAAATGAGTGACGCTTGATTCCAGAGGAGCTTGTTATCCAATAACAAAACAGTCGTGGGCGGCAAATATTAACTG-AAAAAAAGGGGAAGAGTGTAGGTTATAAGACC-AAAAAAATTCAAGTATGGATAGGTATGTGAATGTGGAAGACTTAAGTTGACGAATCCATCGGTTGACCGTTACCTAATGCATAACGTTGTGGTCACCCAAATGCATAGTTCACCAGCATCATTTACTGAAGCAATCATTGTAGGCAATACTAGAAGTAGATGTACTTACAGTGGAGCCAATATTTGTTACGGAAACAG] [-] EMBL CD077958 [TAGTGATACTGCTAATAATAATAGTGNCNCATATAAAATAATAGATTATAGGAGTTGTTTACTTATGTGAAGAAATAAATGAGTGACGCTTGATTCCAGAGGAGCTTGTTATCCAATAACAAAACAGTCGTGGGCGGCAAATATTAACTG AAAAAAAGGGGAAGAGTGTAGGTTATAAGACC AAAAAAATTCAAGTATGGATAGGTATGTGAATGTGGAAGACTTAAGTTGACGAATCCATCGGTTGACCGTTACCTAATGCATAACGTTGTGGTCACCCA ] [+] EMBL CD063271 [ ATTCCAGAGGAGCTTGTTATCCAATAACAAAACAGTCGTGGACGGCAAATATTAACTGAAAAAAAAGGGGAAGAGTGTAGGTTATAAGACCAAAAAAAATTCAAGTATGGATAGGTGTGTGAATGTGGAAGACTTAAGTTGACGAATCCATCGGTTGACCGTTACCTAATGCATAACGTTGTGGTC CCCAAATGCATAGTTCACCAGCATCATTTACTGAAGCAATCATTGTAGGCAATACTAGAAGTAGATGTACTTACAGTGGAGCCAATATTTGTTACGGAAACAG] consensusID : consensus_5603#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 276 fasta sequence [GACGCTTGATTCCAGAGGAGCTTGTTATCCAATAACAAAACAGTCGTGGACGGCAAATATTAACTGAAAAAAAGGGGAAGAGTGTAGGTTATAAGACCAAAAAAATTCAAGTATGGATAGGTATGTGAATGTGGAAGACTTAAGTTGACGAATCCATCGGTTGACCGTTACCTAATGCATAACGTTGTGGTCCCCAAATGCATAGTTCACCAGCATCATTTACTGAAGCAATCATTGTAGGCAATACTGGATTCCAATGAACACATGTCAAGTGGA] [-] EMBL CD126258 [GACGCTTGATTCCAGAGGAGCTTGTTATCCAATAACAAAACAGTCGTGGACGGCAAATATTAACTGAAAAAAAGGGGAAGAGTGTAGGTTATAAGACCAAAAAAATTCAAGTATGGATAGGTATGTGAATGTGGAAGACTTAAGTTGACGAATCCATCGGTTGACCGTTACCTAATGCATAACGTTGTGGTCCCCAAATGCATAGTTCACCAGCATCATTTACTGAAGCAATCATTGTAGGCAATACTGGATTCCAATGAACACATGTCAAGTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5603#0 TAGTGATACTGCTAATAATAATAGTGNCNCATATAAAATAATAGATTATAGGAGTTGTTT 60 consensus_5603#1 ------------------------------------------------------------ consensus_5603#0 ACTTATGTGAAGAAATAAATGAGTGACGCTTGATTCCAGAGGAGCTTGTTATCCAATAAC 120 consensus_5603#1 ------------------------GACGCTTGATTCCAGAGGAGCTTGTTATCCAATAAC 36 ************************************ consensus_5603#0 AAAACAGTCGTGGGCGGCAAATATTAACTGAAAAAAAGGGGAAGAGTGTAGGTTATAAGA 180 consensus_5603#1 AAAACAGTCGTGGACGGCAAATATTAACTGAAAAAAAGGGGAAGAGTGTAGGTTATAAGA 96 ************* ********************************************** consensus_5603#0 CCAAAAAAATTCAAGTATGGATAGGTATGTGAATGTGGAAGACTTAAGTTGACGAATCCA 240 consensus_5603#1 CCAAAAAAATTCAAGTATGGATAGGTATGTGAATGTGGAAGACTTAAGTTGACGAATCCA 156 ************************************************************ consensus_5603#0 TCGGTTGACCGTTACCTAATGCATAACGTTGTGGTCACCCAAATGCATAGTTCACCAGCA 300 consensus_5603#1 TCGGTTGACCGTTACCTAATGCATAACGTTGTGGTC-CCCAAATGCATAGTTCACCAGCA 215 ************************************ *********************** consensus_5603#0 TCATTTACTGAAGCAATCATTGTAGGCAATACTAGAAGTAGATGTACTTACAGTGGAGCC 360 consensus_5603#1 TCATTTACTGAAGCAATCATTGTAGGCAATACTGGATTCCAATGAACACAT-GTCAAGTG 274 ********************************* ** *** ** * ** ** consensus_5603#0 AATATTTGTTACGGAAACAG 380 consensus_5603#1 GA------------------ 276 * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||