These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5611#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence [ACTGTGTGACTGACGGACTGACTAACCGACTGAATGACTGATATGAACACACTCATCCAATGTGCATGGATTGTAGGGATCGGACGTTCCGATTGGTTGGTAGTGAGAGACCAGATTGATAGATGAATCAGATGTGTTCATATGCTTTACAATGGCTCACTGTGTGTTGCCTCACCCTCTCTACTTTCACGAATCGAGGAATGAGTCGAGGAGAATTGAATTGTTGGAAGATTCAGTGTGAATTCCCATGACAGGTTGTTTGTTTCTTGAGACGTGCTGAAGCGTGTGTGTATGTGTGAATTGAAGTGTGAGTGGAGTGTTGTGGACAAACTGCAAGTGAAAACGACCAATCAATATGTCATGCAAGATTCTGCTTACATCTGGTGTGGTGACATTCTAGTCTGTCGCGTTTGTGGTGTCGAGTGTGGATGATTGGTCTGTCGGTTGATGAGTGAGAGAGGGTGTTAGGAGATAAATAATGCTGTGTGGACACTGGGGGTTGGGTGGTGTGAACTGGTTGCAGCAGGTGTACAGAGG] [+] EMBL CD089189 [ACTGTGTGACTGACGGACTGACTAACCGACTGAATGACTGATATGAACACACTCATCCAATGTGCATGGATTGTAGGGATCGGACGTTCCGATTGGTTGGTAGTGAGAGACCAGATTGATAGATGAATCAGATGTGTTCATATGCTTTACAATGGCTCACTGTGTGTTGCCTCACCCTCTCTACTTTCACGAATCGAGGAATGAGTCGAGGAGAATTGAATTGTTGGAAGATTCAGTGTGAATTCCCATGACAGGTTGTTTGTTTCTTGAGACGTGCTGAAGCGTGTGTGTATGTGTGAATTGAAGTGTGAGTGGAGTGTTGTGGACAAACTGCAAGTGAAAACGACCAATCAATATGTCATGCAAGATTCTGCTTACATCTGGTGTGGTGACATTCTAGTCTGTCGCGTTTGTGGTGTCGAGTGTGGATGATTGGTCTGTCGGTTGATGAGTGAGAGAGGGTGTTAGGAGATAAATAATGCTGTGTGGACACTGGGGGTTGGGTGGTGTGAACTGGTTGCAGCAGGTGTACAGAGG] consensusID : consensus_5611#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 336 fasta sequence [TGAATTGGTAATTAAGTGAGTGAATAAGTGAATGACTATCCGACTGAATGACTGATATGAGCACACCGATCCGATGTGCGTGGATTGTAGGGATCGGACGTTCCGATTGGTTGATAGTGAGAGACCAGATTGATTGATGAATCATATTTGTTCATATGGTTTTCAATGGCTCACTGTGTGTTGCCTCACCTTCTCTACTTTCACGAATCGAGGAATGAGTCGAGGAGAATCGAATTGTTGGAAGATTCAGTGTAAATTCACATGGCAGGTTGTTTGTTTCTTGAGAGGTGTTGAAATGAGTGAGTGAGTGAGTGAGTGTGTGTGAATACAATATTG] [+] EMBL CD088453 [TGAATTGGTAATTAAGTGAGTGAATAAGTGAATGACTATCCGACTGAATGACTGATATGAGCACACCGATCCGATGTGCGTGGATTGTAGGGATCGGACGTTCCGATTGGTTGATAGTGAGAGACCAGATTGATTGATGAATCATATTTGTTCATATGGTTTTCAATGGCTCACTGTGTGTTGCCTCACCTTCTCTACTTTCACGAATCGAGGAATGAGTCGAGGAGAATCGAATTGTTGGAAGATTCAGTGTAAATTCACATGGCAGGTTGTTTGTTTCTTGAGAGG ] [+] EMBL CD088460 [ GAATGGGTGAGTGAGTGAGTGAGTGAGTGAGTGACTATCCGACTGAATGACTGATATGAGCACACCGATCCGATGTGCGTGGATTGTAGGGATCGGACGTTCCGATTGGTTGATAGTGAGAGACCAGATTGATTGATGAATCATATTTGTTCATATGGTTTTCAATGGCTCACTGTGTGTTGCCTCACCTTCTCTACTTTCACGAATCGAGGAATGAGTCGAGGAGAATCGAATTGTTGGAAGATTCAGTGTAAATTCACATGACAGGTTGTTTGTTTCTTGAGAGGTGTTGAAATGAGTGAGTGAGTGAGTGAGTGTGTGTGAATACAATATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5611#0 --------------ACTGTGTGACTGACGGACTGACTAACCGACTGAATGACTGATATGA 46 consensus_5611#1 TGAATTGGTAATTAAGTGAGTGAATAAGTGAATGACTATCCGACTGAATGACTGATATGA 60 * ** **** * * ** ****** ********************* consensus_5611#0 ACACACTCATCCAATGTGCATGGATTGTAGGGATCGGACGTTCCGATTGGTTGGTAGTGA 106 consensus_5611#1 GCACACCGATCCGATGTGCGTGGATTGTAGGGATCGGACGTTCCGATTGGTTGATAGTGA 120 ***** **** ****** ********************************* ****** consensus_5611#0 GAGACCAGATTGATAGATGAATCAGATGTGTTCATATGCTTTACAATGGCTCACTGTGTG 166 consensus_5611#1 GAGACCAGATTGATTGATGAATCATATTTGTTCATATGGTTTTCAATGGCTCACTGTGTG 180 ************** ********* ** ********** *** ***************** consensus_5611#0 TTGCCTCACCCTCTCTACTTTCACGAATCGAGGAATGAGTCGAGGAGAATTGAATTGTTG 226 consensus_5611#1 TTGCCTCACCTTCTCTACTTTCACGAATCGAGGAATGAGTCGAGGAGAATCGAATTGTTG 240 ********** *************************************** ********* consensus_5611#0 GAAGATTCAGTGTGAATTCCCATGACAGGTTGTTTGTTTCTTGAGACGTGCTGAAGCGTG 286 consensus_5611#1 GAAGATTCAGTGTAAATTCACATGGCAGGTTGTTTGTTTCTTGAGAGGTGTTGAAATGAG 300 ************* ***** **** ********************* *** **** * * consensus_5611#0 TGTGTATGTGTGAATTGAAGTGTGAGTGGAGTGTTGTGGACAAACTGCAAGTGAAAACGA 346 consensus_5611#1 TGAGTGAGTGAGTGAGTGTGTGTGAATACAATATTG------------------------ 336 ** ** *** * ****** * * * *** consensus_5611#0 CCAATCAATATGTCATGCAAGATTCTGCTTACATCTGGTGTGGTGACATTCTAGTCTGTC 406 consensus_5611#1 ------------------------------------------------------------ consensus_5611#0 GCGTTTGTGGTGTCGAGTGTGGATGATTGGTCTGTCGGTTGATGAGTGAGAGAGGGTGTT 466 consensus_5611#1 ------------------------------------------------------------ consensus_5611#0 AGGAGATAAATAATGCTGTGTGGACACTGGGGGTTGGGTGGTGTGAACTGGTTGCAGCAG 526 consensus_5611#1 ------------------------------------------------------------ consensus_5611#0 GTGTACAGAGG 537 consensus_5611#1 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||