cluster # 5616

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Schistosoma mansoni
cluster # 5616 cluster # 5616 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5616#0 length = 804 sequences # 2

consensus_5616#1 length = 521 sequences # 1

consensusID : consensus_5616#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 804
fasta sequence

                              [GGCCANAATTTGGCACGAGGAACTAACAATACAAGCAAGACGATATCTTCGATAATCATGACCTTTATTCAGTATGTCGATATGAAGCAAAAAATGGTGTACGGCTTTATGAAAATTGAGAATTTGACTCAAGAATATCCAAGCCTAACTACATATTTTGAAGGAGAAATAATAAGTAGACTTCACCCGTTCATGACCGGTAAATGGGATGCAACTATGGAAACAGATGTTTTGCACTGGGAAAAAATACCAGCAACAAGTTCTCTAGGGAACTTCCATATAGATAGTTTCGACTACTCTATTTTAGAGACATCCGACACGATATTTATGAGGTGGAAAGAAAAGTTCATTGTTCCGGATCCCGGTTTGAAACATATAGAAGGAGCGTCATTCGCTGGATTTTATTATATCGGACTACAGAAATCTATTGGACATGTTCTAGGTTATTACTATCATCTTAACTCAGAAATGTTTCAATCTCTCGAACTAAAATATAAACCAGAAAGCACACCGTCTATTTTTCAGTTGCGTTAAGAATGTTCATTATTACGTGTTAGCTTGTGAAATAAATTTGTTTCGACAGATTTATCACTCGATTTTTATTTATTTGTTAGACAGGATGTAACACTTCATTTCCACAATATCTACAAATGTATTTAAATGGCATTNTATGACAAATATTACTTCAATTCACGTCTTCATGCAGCCCCTAATCACTAAACATACCTTTATACTAATACCTCTCAATTGTACAACTTTTAGCATTTATTGAAAAA-TCACTGAGNTACTTGTAAAATATAGNTT]

[+] EMBL CD079672             [GGCCANAATTTGGCACGAGGAACTAACAATACAAGCAAGACGATATCTTCGATAATCATGACCTTTATTCAGTATGTCGATATGAAGCAAAAAATGGTGTACGGCTTTATGAAAATTGAGAATTTGACTCAAGAATATCCAAGCCTAACTACATATTTTGAAGGAGAAATAATAAGTAGACTTCACCCGTTCATGACCGGTAAATGGGATGCAACTATGGAAACAGATGTTTTGCACTGGGAAAAAATACCAGCAACAAGTTCTCTAGGGAACTTCCATATAGATAGTTTCGACTACTCTATTTTAGAGACATCCGACACGATATTTATGAGGTGGAAAGAAAAGTTCATTGTTCCGGATCCCGGTTTGAAACATATAGAAGGAGCGTCATTCGCTGGATTTTATTATATCGGACTACAGAAATCTATTGGACATGTTCTAGGTTATTACTATCATCTTAACTCAGAAATGTTTCAATCTCTCGAACTAAAATATAAACCAGAAAGCACACCGTCTATTTTTCAGTTGCGTTAAGAATGTTCATTATTACGTGTTAGCTTGTGAAATAAATTTGTTTCGACAGATTTATCACTCGATTTTTATTTATTTGTTAGACAGGATGTAACACTTCATTTCCACAATATCTACAAATGTATTTAAATGGCATTNTATGACAAATATTACTTCAATTCACGTCTTCATGCAGCCCCTAATCACTAAACATACCTTTATACTAATACCTCTCAATTGTACAACTTTTAGCATTTATTGAAAAA TCACTGAGNTACTTGTAAAATATAGN  ]
[-] EMBL CD073932             [                                                                                                                                                                     GAAATAATAAGTAGACTTCACCCGTTCATGACCGGTAAATGGGATGCAACTATGGAAACAGATGTTTTGCACTGGGAAAAAATACCAGCAACAAGTTCTCTAGGGAACTTCCATATAGATAGTTTCGACTACTCTATTTTAGAGACATCCGACACGATATTTATGAGGTGGAAAGAAAAGTTCATTGTTCCGGATCCCGGTTTGAAACATATAGAAGGAGCGTCATTCGCTGGATTTTATTATATCGGACTACAGAAATCTATTGGACATGTTCTAGGTTATTACTATCATCTTAACTCAGAAATGTTTCAATCTCTCGAACTAAAATATAAACCAGAAAGCACACCGTCTATTTTTCAGTTGCGTTAAGAATGTTCATTATTACGTGTTAGCTTGTGAAATAAATTTGTTTCGACAGATTTATCACTCGATTTTTATTTATTTGTTAGACAGGATGTAACACTTCATTTCCACAATATCTACAAATGTATTTAAATGGCATTTTATGACAAATATTACTTCAATTCACGTCTTCATGCAGCCCCTAATCACTAACAATACCTTTATACTAATACCTCTCAATTGTACAACTTTTAGCATTTATTGAAAAATTCACTGAGTTACTTGTAAAAaaaaagtt]




>consensus_5616#0
GGCCANAATTTGGCACGAGGAACTAACAATACAAGCAAGACGATATCTTCGATAATCATG
ACCTTTATTCAGTATGTCGATATGAAGCAAAAAATGGTGTACGGCTTTATGAAAATTGAG
AATTTGACTCAAGAATATCCAAGCCTAACTACATATTTTGAAGGAGAAATAATAAGTAGA
CTTCACCCGTTCATGACCGGTAAATGGGATGCAACTATGGAAACAGATGTTTTGCACTGG
GAAAAAATACCAGCAACAAGTTCTCTAGGGAACTTCCATATAGATAGTTTCGACTACTCT
ATTTTAGAGACATCCGACACGATATTTATGAGGTGGAAAGAAAAGTTCATTGTTCCGGAT
CCCGGTTTGAAACATATAGAAGGAGCGTCATTCGCTGGATTTTATTATATCGGACTACAG
AAATCTATTGGACATGTTCTAGGTTATTACTATCATCTTAACTCAGAAATGTTTCAATCT
CTCGAACTAAAATATAAACCAGAAAGCACACCGTCTATTTTTCAGTTGCGTTAAGAATGT
TCATTATTACGTGTTAGCTTGTGAAATAAATTTGTTTCGACAGATTTATCACTCGATTTT
TATTTATTTGTTAGACAGGATGTAACACTTCATTTCCACAATATCTACAAATGTATTTAA
ATGGCATTNTATGACAAATATTACTTCAATTCACGTCTTCATGCAGCCCCTAATCACTAA
ACATACCTTTATACTAATACCTCTCAATTGTACAACTTTTAGCATTTATTGAAAAATCAC
TGAGNTACTTGTAAAATATAGNTT

consensusID : consensus_5616#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 521
fasta sequence

                              [AGCGATCCAAGGGTAAAAAGTATAACGTGGAAGTAACAATACAATATGTCGATATGAAGCAAAAAATGGTGTACGGCTTTATGAAAATTGAGAATTTGACTCAAGAATATCCAAGCCTAACTACATATTTTGAAGGAGAAATAATAAGTAGACTTCACCCGTTCATGACCGGTAAATGGGATGCAACTATGGAAACAGATGTTTTGCACTGGGTATTTGTTCAATTATTATCAGTTCACTTGCAGGAAAAAATACCAGCAACAAGTTCTCTAGGGAACTTCCATATAGATAGTTTCGACTACTCTATTTTAGAGACATCCGACACGATATTTATGAGGTGGAAAGAAAAGTTCATTGTTCCGGATCCCGGTTTGAAACATATAGAAGGAGCGTCATTCGCTGGATTTTATTATATCGGACTACAGAAATCTATTGGACATGTTCTAGGTTATTACTATCATCTTAACTCAGAAATGTATGGATTTGTATTTTAACTGTTTTATTTATGCTCTACTTTAGGT]

[+] EMBL CD084251             [AGCGATCCAAGGGTAAAAAGTATAACGTGGAAGTAACAATACAATATGTCGATATGAAGCAAAAAATGGTGTACGGCTTTATGAAAATTGAGAATTTGACTCAAGAATATCCAAGCCTAACTACATATTTTGAAGGAGAAATAATAAGTAGACTTCACCCGTTCATGACCGGTAAATGGGATGCAACTATGGAAACAGATGTTTTGCACTGGGTATTTGTTCAATTATTATCAGTTCACTTGCAGGAAAAAATACCAGCAACAAGTTCTCTAGGGAACTTCCATATAGATAGTTTCGACTACTCTATTTTAGAGACATCCGACACGATATTTATGAGGTGGAAAGAAAAGTTCATTGTTCCGGATCCCGGTTTGAAACATATAGAAGGAGCGTCATTCGCTGGATTTTATTATATCGGACTACAGAAATCTATTGGACATGTTCTAGGTTATTACTATCATCTTAACTCAGAAATGTATGGATTTGTATTTTAACTGTTTTATTTATGCTCTACTTTAGGT]




>consensus_5616#1
AGCGATCCAAGGGTAAAAAGTATAACGTGGAAGTAACAATACAATATGTCGATATGAAGC
AAAAAATGGTGTACGGCTTTATGAAAATTGAGAATTTGACTCAAGAATATCCAAGCCTAA
CTACATATTTTGAAGGAGAAATAATAAGTAGACTTCACCCGTTCATGACCGGTAAATGGG
ATGCAACTATGGAAACAGATGTTTTGCACTGGGTATTTGTTCAATTATTATCAGTTCACT
TGCAGGAAAAAATACCAGCAACAAGTTCTCTAGGGAACTTCCATATAGATAGTTTCGACT
ACTCTATTTTAGAGACATCCGACACGATATTTATGAGGTGGAAAGAAAAGTTCATTGTTC
CGGATCCCGGTTTGAAACATATAGAAGGAGCGTCATTCGCTGGATTTTATTATATCGGAC
TACAGAAATCTATTGGACATGTTCTAGGTTATTACTATCATCTTAACTCAGAAATGTATG
GATTTGTATTTTAACTGTTTTATTTATGCTCTACTTTAGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5616#0      GGCCANAATTTGGCACGAGGAACTAACAATACAAGCAAGACGATATCTTCGATAATCATG 60
consensus_5616#1      ------------------------AGCGATCCAAG-GGTAAAAAGTATAACGTGGAAGTA 35
                                              * * ** ****    *  *  * *    *     * 

consensus_5616#0      ACCTTTATTCAGTATGTCGATATGAAGCAAAAAATGGTGTACGGCTTTATGAAAATTGAG 120
consensus_5616#1      AC---AATACAATATGTCGATATGAAGCAAAAAATGGTGTACGGCTTTATGAAAATTGAG 92
                      **    ** ** ************************************************

consensus_5616#0      AATTTGACTCAAGAATATCCAAGCCTAACTACATATTTTGAAGGAGAAATAATAAGTAGA 180
consensus_5616#1      AATTTGACTCAAGAATATCCAAGCCTAACTACATATTTTGAAGGAGAAATAATAAGTAGA 152
                      ************************************************************

consensus_5616#0      CTTCACCCGTTCATGACCGGTAAATGGGATGCAACTATGGAAACAGATGTTTTGCACTGG 240
consensus_5616#1      CTTCACCCGTTCATGACCGGTAAATGGGATGCAACTATGGAAACAGATGTTTTGCACTGG 212
                      ************************************************************

consensus_5616#0      G---------------------------------AAAAAATACCAGCAACAAGTTCTCTA 267
consensus_5616#1      GTATTTGTTCAATTATTATCAGTTCACTTGCAGGAAAAAATACCAGCAACAAGTTCTCTA 272
                      *                                 **************************

consensus_5616#0      GGGAACTTCCATATAGATAGTTTCGACTACTCTATTTTAGAGACATCCGACACGATATTT 327
consensus_5616#1      GGGAACTTCCATATAGATAGTTTCGACTACTCTATTTTAGAGACATCCGACACGATATTT 332
                      ************************************************************

consensus_5616#0      ATGAGGTGGAAAGAAAAGTTCATTGTTCCGGATCCCGGTTTGAAACATATAGAAGGAGCG 387
consensus_5616#1      ATGAGGTGGAAAGAAAAGTTCATTGTTCCGGATCCCGGTTTGAAACATATAGAAGGAGCG 392
                      ************************************************************

consensus_5616#0      TCATTCGCTGGATTTTATTATATCGGACTACAGAAATCTATTGGACATGTTCTAGGTTAT 447
consensus_5616#1      TCATTCGCTGGATTTTATTATATCGGACTACAGAAATCTATTGGACATGTTCTAGGTTAT 452
                      ************************************************************

consensus_5616#0      TACTATCATCTTAACTCAGAAATGTTTCAATCTCTCGAACTAAAATATAAACCAGAAAGC 507
consensus_5616#1      TACTATCATCTTAACTCAGAAATGTATGGATTTGT---------ATTTTAACTGTTTTAT 503
                      ************************* *  ** * *         ** * ***        

consensus_5616#0      ACACCGTCTATTTTTCAGTTGCGTTAAGAATGTTCATTATTACGTGTTAGCTTGTGAAAT 567
consensus_5616#1      TTATGCTCTACTTT--AGGT---------------------------------------- 521
                        *   **** ***  ** *                                        

consensus_5616#0      AAATTTGTTTCGACAGATTTATCACTCGATTTTTATTTATTTGTTAGACAGGATGTAACA 627
consensus_5616#1      ------------------------------------------------------------
                                                                                  

consensus_5616#0      CTTCATTTCCACAATATCTACAAATGTATTTAAATGGCATTNTATGACAAATATTACTTC 687
consensus_5616#1      ------------------------------------------------------------
                                                                                  

consensus_5616#0      AATTCACGTCTTCATGCAGCCCCTAATCACTAAACATACCTTTATACTAATACCTCTCAA 747
consensus_5616#1      ------------------------------------------------------------
                                                                                  

consensus_5616#0      TTGTACAACTTTTAGCATTTATTGAAAAATCACTGAGNTACTTGTAAAATATAGNTT 804
consensus_5616#1      ---------------------------------------------------------