cluster # 5623

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Schistosoma mansoni
cluster # 5623 cluster # 5623 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5623#0 length = 517 sequences # 1

consensus_5623#1 length = 380 sequences # 2

consensusID : consensus_5623#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 517
fasta sequence

                              [TTTTCCGTTTCTCCTGAACATCGTTTTCCAAATTCACAAAATGTGTCATTCACCGCACGGGTAGAGGTGCAAAATGGTTCTGATCAACCCACTACAGCATATCTTACCACTTCACGATTAAATCAAGCTTACTTTCTACGAAGTCGTAATCTTCTTCGTTGCCGGGACCAAAGTAGACGACGCGACATGGTTGTTCGTGGTAGTTTGGCTATCGCCCATTTTTTGGATGAGCTACCGACTACGGAACATCAACTAGAGTCTTTATCTGTTGACGTCGCCTTTCATTCCGGAACTCAAATGTAGTTTACAATGGGTGGTGTTTTTTACGAGGTTTCTTCGATGGGTTCAAGTTCCACCAACTCAAGCTCACAGGAAAACTCCGTTCGCAAAGTCCTTCGGTGTTTTACTAGAACTATGATACTGGTCGCACCAGGTGGTCATATAGTGCAAGATGATTATATTGTGTCTAATCCAACTACCTCATTGTGTAAGAAATACATTACTGAAATGGGCACAA]

[+] EMBL CD162123             [TTTTCCGTTTCTCCTGAACATCGTTTTCCAAATTCACAAAATGTGTCATTCACCGCACGGGTAGAGGTGCAAAATGGTTCTGATCAACCCACTACAGCATATCTTACCACTTCACGATTAAATCAAGCTTACTTTCTACGAAGTCGTAATCTTCTTCGTTGCCGGGACCAAAGTAGACGACGCGACATGGTTGTTCGTGGTAGTTTGGCTATCGCCCATTTTTTGGATGAGCTACCGACTACGGAACATCAACTAGAGTCTTTATCTGTTGACGTCGCCTTTCATTCCGGAACTCAAATGTAGTTTACAATGGGTGGTGTTTTTTACGAGGTTTCTTCGATGGGTTCAAGTTCCACCAACTCAAGCTCACAGGAAAACTCCGTTCGCAAAGTCCTTCGGTGTTTTACTAGAACTATGATACTGGTCGCACCAGGTGGTCATATAGTGCAAGATGATTATATTGTGTCTAATCCAACTACCTCATTGTGTAAGAAATACATTACTGAAATGGGCACAA]




>consensus_5623#0
TTTTCCGTTTCTCCTGAACATCGTTTTCCAAATTCACAAAATGTGTCATTCACCGCACGG
GTAGAGGTGCAAAATGGTTCTGATCAACCCACTACAGCATATCTTACCACTTCACGATTA
AATCAAGCTTACTTTCTACGAAGTCGTAATCTTCTTCGTTGCCGGGACCAAAGTAGACGA
CGCGACATGGTTGTTCGTGGTAGTTTGGCTATCGCCCATTTTTTGGATGAGCTACCGACT
ACGGAACATCAACTAGAGTCTTTATCTGTTGACGTCGCCTTTCATTCCGGAACTCAAATG
TAGTTTACAATGGGTGGTGTTTTTTACGAGGTTTCTTCGATGGGTTCAAGTTCCACCAAC
TCAAGCTCACAGGAAAACTCCGTTCGCAAAGTCCTTCGGTGTTTTACTAGAACTATGATA
CTGGTCGCACCAGGTGGTCATATAGTGCAAGATGATTATATTGTGTCTAATCCAACTACC
TCATTGTGTAAGAAATACATTACTGAAATGGGCACAA

consensusID : consensus_5623#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 380
fasta sequence

                              [ACGCGACATGGTTGTTCGTGGTAGTTTGGCTATCGCCCATTTTTTGGATGAGCTACCGACTACGGAACATCAACTAGAGTCTTTATCTGTT-ACGTCGCCTTTCATTCCGTAAGTATAAATTATTTCTATTTCGTTTTAGTAACTATTGAGAATAGTGAGATAGTTGTTTCCTAAATGCTAAATAATCACAATTGTGCTCAATAATACAAAAAATCAGATCAATTGATAAATGTGCGACCACTTTCCCTTTCATTAATAAAGTACTTATATCTTGATTATTTATTTTCTTTAAGCCTGTTCACCCTCGTCAAGTAACATACACCGCCCACCAGCATTCTCCATCGAACTCTATCCTGGACAGTCTTTTTCATTTGCTATTC]

[+] EMBL CD154576             [ACGCGACATGGTTGTTCGTGGTAGTTTGGCTATCGCCCATTTTTTGGATGAGCTACCGACTACGGAACATCAACTAGAGTCTTTATCTGTT ACGTCGCCTTTCATTCCGTAAGTATAAATTATTTCTATTTCGTTTTAGTAACTATTGAGAATAGTGAGATAGTTGTTTCCTAAATGCTAAATAATCACAATTGTGCTCAATAATACAAAAAATCAGATCAATTGATAAATGTGCGACCACTTTCCCTTTCATTAATAAAGTACTTATATCTTGATTATTTATTTTCTTTAAGCCTGTTCACCCTCGTCAAGTAACATACACCGCCCACCAGCATTCTCCATCGAACTCTATCCTGGACAGTCTTTTTCATTTGCTATT ]
[-] EMBL CD154646             [ CGCGACATGGTTGTTCGTGGTAGTTTGGCTGTCGCCCATTTTTTGGATGAGCTACCGACTACGGAACATCAACTAGAGTCTTTATCTGTTGACGTCGCCTTTCATTCCGTAAGTATAAATTATTTCTATTTCGTTTTAGTAACTATTGAGAATAGTGAGATAGTTGTTTCCTAAATGCTAAATAATCACAATTGTGCTCAATAATACAAAAAATCAGATCAATTGATAAATGTGCGACCACTTTCCCTTTCATTAATAAAGTACTTATATCTTGATTATTTATTTTCTTTAAGCCTGTTCACCCTCGTCAAGTAACATACACCGCCCACCAGCATTCTCCATCGAACTCTATCCTGGACAGTCTTTTTCATTTGCTATTC]




>consensus_5623#1
ACGCGACATGGTTGTTCGTGGTAGTTTGGCTATCGCCCATTTTTTGGATGAGCTACCGAC
TACGGAACATCAACTAGAGTCTTTATCTGTTACGTCGCCTTTCATTCCGTAAGTATAAAT
TATTTCTATTTCGTTTTAGTAACTATTGAGAATAGTGAGATAGTTGTTTCCTAAATGCTA
AATAATCACAATTGTGCTCAATAATACAAAAAATCAGATCAATTGATAAATGTGCGACCA
CTTTCCCTTTCATTAATAAAGTACTTATATCTTGATTATTTATTTTCTTTAAGCCTGTTC
ACCCTCGTCAAGTAACATACACCGCCCACCAGCATTCTCCATCGAACTCTATCCTGGACA
GTCTTTTTCATTTGCTATTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5623#0      TTTTCCGTTTCTCCTGAACATCGTTTTCCAAATTCACAAAATGTGTCATTCACCGCACGG 60
consensus_5623#1      ------------------------------------------------------------
                                                                                  

consensus_5623#0      GTAGAGGTGCAAAATGGTTCTGATCAACCCACTACAGCATATCTTACCACTTCACGATTA 120
consensus_5623#1      ------------------------------------------------------------
                                                                                  

consensus_5623#0      AATCAAGCTTACTTTCTACGAAGTCGTAATCTTCTTCGTTGCCGGGACCAAAGTAGACGA 180
consensus_5623#1      -----------------------------------------------------------A 1
                                                                                 *

consensus_5623#0      CGCGACATGGTTGTTCGTGGTAGTTTGGCTATCGCCCATTTTTTGGATGAGCTACCGACT 240
consensus_5623#1      CGCGACATGGTTGTTCGTGGTAGTTTGGCTATCGCCCATTTTTTGGATGAGCTACCGACT 61
                      ************************************************************

consensus_5623#0      ACGGAACATCAACTAGAGTCTTTATCTGTTGACGTCGCCTTTCATTCCGGAACTCAAATG 300
consensus_5623#1      ACGGAACATCAACTAGAGTCTTTATCTGTT-ACGTCGCCTTTCATTCCGTAAGTATAAAT 120
                      ****************************** ****************** ** *  **  

consensus_5623#0      TAGTTTACAATGGGTGGTGTTTTTTACGAGGTTTCTTCGATGGGTTCAAGTTCCACCAAC 360
consensus_5623#1      TATTTCTATTTCGTTTTAGTAACTATTGAGAATAGTGAGATAG--TTGTTTCCTAAATGC 178
                      ** **     * * *   **   *   ***  *  *  *** *  *    * * *    *

consensus_5623#0      TCAA-GCTCACAGGAAAACTCCGTTCGCAAAGTCCTTCGGTGTTTTACTAGAACTATGAT 419
consensus_5623#1      TAAATAATCACAATTGTGCTCAATAATACAAAAAATCAGATCAATTGATAAATGTGCGAC 238
                      * **   *****      ***  *     **    *  * *   **  ** *  *  ** 

consensus_5623#0      ACTGGTCGCACCAGGTGGTCATATAGT-GCAAGATGATTAT--ATTGTGTCTAATCCAAC 476
consensus_5623#1      CACTTTCCCTTTCATTAATAAAGTACTTATATCTTGATTATTTATTTTCTTTAAGCCTGT 298
                           ** *      *  * *  ** *   *   *******  *** * * *** **   

consensus_5623#0      TA--CCTCATTGTGTAAGAAATACATTACTGAAATGGGCACAA----------------- 517
consensus_5623#1      TCACCCTCGTCAAGTAACATACACCGCCCACCAGCATTCTCCATCGAACTCTATCCTGGA 358
                      *   **** *   **** * * **    *   *     * * *                 

consensus_5623#0      ----------------------
consensus_5623#1      CAGTCTTTTTCATTTGCTATTC 380