These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5629#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 513 fasta sequence [TTATGTACGCCCTTATCTAAATCAATCAAGAAATAGGAGAGAAATAACACGATAGAAAGAAAATAAAAAAATCTGTGAGTAAACAACTATCACAAAAAAGAAATGGACTCTTCAAAGAAAAAAAGAATGTTCAAGGTGATATCAATAAAACAAATATATATAGGAGAAAATAAGTGTTTCCTTTAACAGAGAATGATAAGTATAACACATGAAAGAGAAGTCAAAATCATATGATAAAAAAATGGTCTCACATCTATTATGGCTTCATTTACTACTTATCAGATTTGAAAATGATTTCCTACAATCAACGAATGAGTTTGCCCGACTATCTTAACCAGATAGTTAAAGACTTTGGGTGATATGGTTCAAAATCGTTCACAATGGCGCAGGATACTGTTTCGATCTTCTACAATTGGACCAAAACAGATTGTTATCGATAAATAAAACAGCTAATAGATTCATAGATCAATAATTTGGCAAATACTAGTTCAATTTATACGACAACCTAAGTTT] [+] EMBL AI975554 [TTATGTACGCCCTTATCTAAATCAATCAAGAAATAGGAGAGAAATAACACGATAGAAAGAAAATAAAAAAATCTGTGAGTAAACAACTATCACAAAAAAGAAATGGACTCTTCAAAGAAAAAAAGAATGTTCAAGGTGATATCAATAAAACAAATATATATAGGAGAAAATAAGTGTTTCCTTTAACAGAGAATGATAAGTATAACACATGAAAGAGAAGTCAAAATCATATGATAAAAAAATGGTCTCACATCTATTATGGCTTCATTTACTACTTATCAGATTTGAAAATGATTTCCTACAATCAACGAATGAGTTTGCCCGACTATCTTAACCAGATAGTTAAAGACTTTGGGTGATATGGTTCAAAATCGTTCACAATGGCGCAGGATACTGTTTCGATCTTCTACAATTGGACCAAAACAGATTGTTATCGATAAATAAAACAGCTAATAGATTCATAGATCAATAATTTGGCAAATACTAGTTCAATTTATACGACAACCTAAGTTT] [+] EMBL AI975733 [TTATGTTCGCCCTTATCTAAATCAATCAAGAAATAGGAGAGAAATAACAAGATAGAAAGAAAATAAAAAAATCTGTGAGTAAACAACTATCACAAAAAAGAAATGGACTCTTCAAAGAAAAAAAGAATGTTCAAGGTGATATCAATAAAACAAATATATATAGGAGAAAATAAGTGTTTCCTTTAACAGAGAATGATAAGTATAACAAATGAAAGAGAAGTCAAAATCATATGATAAAAAAATGGTCTCACATCTATTATGGCTTCATTTACTACTTATCAGATTTGAAAATGATTTCCTACAATCAACGAATGAGTTTGCCCGACTATCTTAACCAGATAGTTAAAGACTTTGGGTGATATGGTTCAAAATCGTTCACAATGGCGCAGGATACTGTTTCGATCTTCTCCAATTGGACCAAAACAGTTTGTTATCGATAAATAAAACAGTTAATAGATTCATAGATCAATAATTTGGCAAATACTAGTT ] consensusID : consensus_5629#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 263 fasta sequence [CAGAATCAGGAAATAGGAGAGAAATAACAAGATAGAAAGAAAATAAAAAAATCTGTGAGTAAACAACTATCACAAAAAAGAAATGGACTCTTCAAAGAAAAAAAGAATGTTCAAGGTGATATCAATAAAACAAATATATATAGGAGAAAATAAGTGTTTCCTTTAACAGAGAATGATAAGTATAACAAATGAAAGAGGTATTGTTTTTTTGACAATAATTAGTTTTATAATCGTTTACCGTCAAAATTCACATCATATTCTTA] [-] EMBL AI067077 [CAGAATCAGGAAATAGGAGAGAAATAACAAGATAGAAAGAAAATAAAAAAATCTGTGAGTAAACAACTATCACAAAAAAGAAATGGACTCTTCAAAGAAAAAAAGAATGTTCAAGGTGATATCAATAAAACAAATATATATAGGAGAAAATAAGTGTTTCCTTTAACAGAGAATGATAAGTATAACAAATGAAAGAGGTATTGTTTTTTTGACAATAATTAGTTTTATAATCGTTTACCGTCAAAATTCACATCATATTCTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5629#0 TTATGTACGCCCTTATCTAAATCAATCAAGAAATAGGAGAGAAATAACACGATAGAAAGA 60 consensus_5629#1 --------------------CAGAATCAGGAAATAGGAGAGAAATAACAAGATAGAAAGA 40 ***** ******************** ********** consensus_5629#0 AAATAAAAAAATCTGTGAGTAAACAACTATCACAAAAAAGAAATGGACTCTTCAAAGAAA 120 consensus_5629#1 AAATAAAAAAATCTGTGAGTAAACAACTATCACAAAAAAGAAATGGACTCTTCAAAGAAA 100 ************************************************************ consensus_5629#0 AAAAGAATGTTCAAGGTGATATCAATAAAACAAATATATATAGGAGAAAATAAGTGTTTC 180 consensus_5629#1 AAAAGAATGTTCAAGGTGATATCAATAAAACAAATATATATAGGAGAAAATAAGTGTTTC 160 ************************************************************ consensus_5629#0 CTTTAACAGAGAATGATAAGTATAACACATGAAAGAGAAGTCAAAATCATATGATAAAAA 240 consensus_5629#1 CTTTAACAGAGAATGATAAGTATAACAAATGAAAGAGGTATTGT--TTTTTTGACAATAA 218 *************************** ********* * * * *** ** ** consensus_5629#0 AATGGTCTCACATCTATTATGGCTTCATTTACTACTTATCAGATTTGAAAATGATTTCCT 300 consensus_5629#1 T-TAGTTTTATAATCGTT-TACCGTCAA--AATTCACATCATATTCTTA----------- 263 * ** * * * ** * * *** * * * **** *** * consensus_5629#0 ACAATCAACGAATGAGTTTGCCCGACTATCTTAACCAGATAGTTAAAGACTTTGGGTGAT 360 consensus_5629#1 ------------------------------------------------------------ consensus_5629#0 ATGGTTCAAAATCGTTCACAATGGCGCAGGATACTGTTTCGATCTTCTACAATTGGACCA 420 consensus_5629#1 ------------------------------------------------------------ consensus_5629#0 AAACAGATTGTTATCGATAAATAAAACAGCTAATAGATTCATAGATCAATAATTTGGCAA 480 consensus_5629#1 ------------------------------------------------------------ consensus_5629#0 ATACTAGTTCAATTTATACGACAACCTAAGTTT 513 consensus_5629#1 --------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||