cluster # 5642

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Schistosoma mansoni
cluster # 5642 cluster # 5642 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5642#0 length = 636 sequences # 2

consensus_5642#1 length = 406 sequences # 1

consensusID : consensus_5642#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 636
fasta sequence

                              [GCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAAGACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCCATAGTAATACAAGACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGATTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAAGACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAAGACCACCAAGATCA]

[-] EMBL CD126322             [GCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAAGACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCCATAGTAATACAAGACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGATTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAAGACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACA                                                                 ]
[+] EMBL CD126392             [                                                      GGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAAGACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACCGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAAGACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAGGATCGGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAAGACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAAGACCACCAAGATCA]




>consensus_5642#0
GCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTA
GTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGG
TGTCCCAATAGTAATACAAGACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCAT
TTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATA
GGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCCATAGTAATACAA
GACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACA
CTGACTGATTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATC
GGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAAGACCACCAAGATCATTTTC
ATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGG
GTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTG
TGGTGTCCCAATAGTAATACAAGACCACCAAGATCA

consensusID : consensus_5642#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 406
fasta sequence

                              [GCTCGGTACCCGTTGTGCCATGATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAAGACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAAGACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATA]

[+] EMBL CD063507             [GCTCGGTACCCGTTGTGCCATGATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAAGACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAAGACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATA]




>consensus_5642#1
GCTCGGTACCCGTTGTGCCATGATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAG
GGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAG
TGTGGTGTCCCAATAGTAATACAAGACCACCAAGATCATTTTCATCGCATTTGTGAAATT
TTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAAT
TGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAA
TACAAGACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCC
AGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5642#0      GCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTA 60
consensus_5642#1      ------------------------------------------------------------
                                                                                  

consensus_5642#0      GTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGG 120
consensus_5642#1      ------------------------------------------------------------
                                                                                  

consensus_5642#0      TGTCCCAATAGTAATACAAGACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCAT 180
consensus_5642#1      ------------------------------------GCTCGGTACCCGTTGTGCCATGAT 24
                                                           *   * *   **       * **

consensus_5642#0      TTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATA 240
consensus_5642#1      TTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATA 84
                      ************************************************************

consensus_5642#0      GGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCCATAGTAATACAA 300
consensus_5642#1      GGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAA 144
                      *********************************************** ************

consensus_5642#0      GACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACA 360
consensus_5642#1      GACCACCAAGATCATTTTCATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACA 204
                      ************************************************************

consensus_5642#0      CTGACTGATTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATC 420
consensus_5642#1      CTGACTGACTGAGTTAGGGGTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATC 264
                      ******** ***************************************************

consensus_5642#0      GGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAAGACCACCAAGATCATTTTC 480
consensus_5642#1      GGTCGCCGACACAACAGTGTGGTGTCCCAATAGTAATACAAGACCACCAAGATCATTTTC 324
                      ************************************************************

consensus_5642#0      ATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGG 540
consensus_5642#1      ATCGCATTTGTGAAATTTTCATTTCTCCGACTTTCCAGACACTGACTGACTGAGTTAGGG 384
                      ************************************************************

consensus_5642#0      GTAGTATCCCAACAAATTGATAGGGCAGACATTTGAAGATCGGTCGCCGACACAACAGTG 600
consensus_5642#1      GTAGTATCCCAACAAATTGATA-------------------------------------- 406
                      **********************                                      

consensus_5642#0      TGGTGTCCCAATAGTAATACAAGACCACCAAGATCA 636
consensus_5642#1      ------------------------------------