These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5644#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 394 fasta sequence [GCATCACTGCAACAAAAAGAACTGAATCCAAGAAGCCCATGTTGGGCAGCACTGCAACAAAAAGAACTGAATCCAAGAAGCAACAACCGTTTATATCTCCAACCTGTTTGCTTATTCAACCACGAAATCTTAATTTGAGTCATCACCTATCTACTTCATTACCATCTCCGTTGTCAAAAGTTCACTTGTCTTCCGGAAGTTCACCATTTCGACAATGACTGGTTGTTCAAGTTTAGAGTTAAGTGTTTCTTCCTATCGTCCAATGGCTGTTTCCTTTGAATCTTCTTTTATTGGAACTCAGTGTAATTCCTCAGGTAGTTGTACTGCCGCAGTATCCACATGTACCAGTAATAGTAGTGGTGGTGTTGCCACCTCTGCCGGTACTTCAGTGATG] [+] EMBL CD198615 [GCATCACTGCAACAAAAAGAACTGAATCCAAGAAGCCCATGTTGGGCAGCACTGCAACAAAAAGAACTGAATCCAAGAAGCAACAACCGTTTATATCTCCAACCTGTTTGCTTATTCAACCACGAAATCTTAATTTGAGTCATCACCTATCTACTTCATTACCATCTCCGTTGTCAAAAGTTCACTTGTCTTCCGGAAGTTCACCATTTCGACAATGACTGGTTGTTCAAGTTTAGAGTTAAGTGTTTCTTCCTATCGTCCAATGGCTGTTTCCTTTGAATCTTCTTTTATTGGAACTCAGTGTAATTCCTCAGGTAGTTGTACTGCCGCAGTATCCACATGTACCAGTAATAGTAGTGGTGGTGTTGCCACCTCTGCCGGTACTTCAGTGATG] [+] EMBL CD187347 [ GAACTGAATCCAAGAAGCAACAACCGTTTATATCTCCAACCTGTTTGCTTATTCAACCACGAAATCTTAATTTGAGTCATCACCTATCTACTTCATTACCATCTCCGTTGTCAAAAGTTCACTTGTCTTCCGGAAGTTCACCATTTCGACAATGACTGGTTGTTCAAGTTTAGAGTTAAGTGTTTCTTCCTATCGTCCAATGGCTGTTTCCTTTGAATCTTCTTTTATTGGAACTCAGTGTAATTCCTCAGGTAGTTGTACTGCCGCAGTATCCCCATGTACCAGTAATAGTAGTGGTGGTGTTGCCACCTCT ] consensusID : consensus_5644#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence [ATGGATTACTATTTTCAATTCTGATACATTAGAAAGGTTAAGAATTTTGAGATTTGATCGATCAGTATGCCCAATTCACACATGTCCTACCAATTACTTACCAGTAATGAGCCGTTGTGGATCAAGGATAGCTTTAATTACACGACAAGCAGTGGGATATTATAATAGTACTAGTAATCAGAACGCCAGTAATAATTCACGTGAATACTTGTTTTCCAGCTGTAAGACTCTTCCTGTATCTTTAAGGCACTCCGTCCCATCTGTAAGCGTAGAAAGCTGTTCTAATTCACAGTGGGTGAATAACAAAGGTGCTAGTCAAGAAAACAGCAAAGAAATTTCAACAAAAAGAACTGAATCCAAGAAGCAACAACCGTTTATATCTCCAACCTG] [+] EMBL CD179544 [ATGGATTACTATTTTCAATTCTGATACATTAGAAAGGTTAAGAATTTTGAGATTTGATCGATCAGTATGCCCAATTCACACATGTCCTACCAATTACTTACCAGTAATGAGCCGTTGTGGATCAAGGATAGCTTTAATTACACGACAAGCAGTGGGATATTATAATAGTACTAGTAATCAGAACGCCAGTAATAATTCACGTGAATACTTGTTTTCCAGCTGTAAGACTCTTCCTGTATCTTTAAGGCACTCCGTCCCATCTGTAAGCGTAGAAAGCTGTTCTAATTCACAGTGGGTGAATAACAAAGGTGCTAGTCAAGAAAACAGCAAAGAAATTTCAACAAAAAGAACTGAATCCAAGAAGCAACAACCGTTTATATCTCCAACCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5644#0 --GCATCACTGCAACAAAAAGAACTGAATCCAAGAAGCCCATGTTGGGCAGCACTGCAAC 58 consensus_5644#1 ATGGATTACTATTTTCAATTCTGATACATTAGAAAGGTTAAGAATTTTGAG-ATTTGATC 59 * ** *** ** * ** * * * * * ** * * * * consensus_5644#0 AAAAAGAA--CTGAATCCAAGAAGCAACAACCGTTTATATCTCCAACCTGTTTGCTTATT 116 consensus_5644#1 GATCAGTATGCCCAATTCACACATGTCCTACCAATTACTTACCAGTAATGAGCCGTTGTG 119 * ** * * *** ** * * *** *** * * ** ** * consensus_5644#0 CAACCACGAAATCTTAATTTGAGTCATCACCTATCTACT-TCATTACCATCTCCGTTGTC 175 consensus_5644#1 GATCAAGGATAGCTTTAATTACACGACAAGCAGTGGGATATTATAATAGTACTAGTAATC 179 * * * ** * *** * ** * * * * * * ** * * ** ** consensus_5644#0 AAAAGTTCACTTGTCTTCCGGAAGTTCACCATTTCGACAA-TGACTGGTTGTTCAAGTTT 234 consensus_5644#1 AGAACGCCAGTAATAATTCACGTGAATACTTGTTTTCCAGCTGTAAGACTCTTCCTGTAT 239 * ** ** * * * * * ** ** ** ** * * *** ** * consensus_5644#0 AGAGTTAAGTGTTTCTTCCTATCGTCCAATGGCTGTTTCCTTTGAATCTTCTTTTATTGG 294 consensus_5644#1 CTT-TAAGGCACTCCGTCCCATCTGTAAGCG---------TAGAAAGCTGTTCTAATTCA 289 * * * * * *** *** * * * ** ** * * *** consensus_5644#0 AACTCAGTGTAATTCCTCAGGTAGTTGT-ACTGCCGCAGTATCCACATGT-ACCAGTAAT 352 consensus_5644#1 CAGTGGGTG-AATAACAAAGGTGCTAGTCAAGAAAACAGCAAAGAAATTTCAACAAAAAG 348 * * *** *** * **** * ** * *** * * ** * * ** ** consensus_5644#0 AGTAGTGGTGGTGTTGCCACCTCTGCCGGTACTTCAGTGATG 394 consensus_5644#1 AACTGAATCCAAGAAGCAACAACCGTTTATATCTCCAACCTG 390 * * * ** ** * * ** ** ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||