cluster # 5644

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Schistosoma mansoni
cluster # 5644 cluster # 5644 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5644#0 length = 394 sequences # 2

consensus_5644#1 length = 390 sequences # 1

consensusID : consensus_5644#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 394
fasta sequence

                              [GCATCACTGCAACAAAAAGAACTGAATCCAAGAAGCCCATGTTGGGCAGCACTGCAACAAAAAGAACTGAATCCAAGAAGCAACAACCGTTTATATCTCCAACCTGTTTGCTTATTCAACCACGAAATCTTAATTTGAGTCATCACCTATCTACTTCATTACCATCTCCGTTGTCAAAAGTTCACTTGTCTTCCGGAAGTTCACCATTTCGACAATGACTGGTTGTTCAAGTTTAGAGTTAAGTGTTTCTTCCTATCGTCCAATGGCTGTTTCCTTTGAATCTTCTTTTATTGGAACTCAGTGTAATTCCTCAGGTAGTTGTACTGCCGCAGTATCCACATGTACCAGTAATAGTAGTGGTGGTGTTGCCACCTCTGCCGGTACTTCAGTGATG]

[+] EMBL CD198615             [GCATCACTGCAACAAAAAGAACTGAATCCAAGAAGCCCATGTTGGGCAGCACTGCAACAAAAAGAACTGAATCCAAGAAGCAACAACCGTTTATATCTCCAACCTGTTTGCTTATTCAACCACGAAATCTTAATTTGAGTCATCACCTATCTACTTCATTACCATCTCCGTTGTCAAAAGTTCACTTGTCTTCCGGAAGTTCACCATTTCGACAATGACTGGTTGTTCAAGTTTAGAGTTAAGTGTTTCTTCCTATCGTCCAATGGCTGTTTCCTTTGAATCTTCTTTTATTGGAACTCAGTGTAATTCCTCAGGTAGTTGTACTGCCGCAGTATCCACATGTACCAGTAATAGTAGTGGTGGTGTTGCCACCTCTGCCGGTACTTCAGTGATG]
[+] EMBL CD187347             [                                                               GAACTGAATCCAAGAAGCAACAACCGTTTATATCTCCAACCTGTTTGCTTATTCAACCACGAAATCTTAATTTGAGTCATCACCTATCTACTTCATTACCATCTCCGTTGTCAAAAGTTCACTTGTCTTCCGGAAGTTCACCATTTCGACAATGACTGGTTGTTCAAGTTTAGAGTTAAGTGTTTCTTCCTATCGTCCAATGGCTGTTTCCTTTGAATCTTCTTTTATTGGAACTCAGTGTAATTCCTCAGGTAGTTGTACTGCCGCAGTATCCCCATGTACCAGTAATAGTAGTGGTGGTGTTGCCACCTCT                  ]




>consensus_5644#0
GCATCACTGCAACAAAAAGAACTGAATCCAAGAAGCCCATGTTGGGCAGCACTGCAACAA
AAAGAACTGAATCCAAGAAGCAACAACCGTTTATATCTCCAACCTGTTTGCTTATTCAAC
CACGAAATCTTAATTTGAGTCATCACCTATCTACTTCATTACCATCTCCGTTGTCAAAAG
TTCACTTGTCTTCCGGAAGTTCACCATTTCGACAATGACTGGTTGTTCAAGTTTAGAGTT
AAGTGTTTCTTCCTATCGTCCAATGGCTGTTTCCTTTGAATCTTCTTTTATTGGAACTCA
GTGTAATTCCTCAGGTAGTTGTACTGCCGCAGTATCCACATGTACCAGTAATAGTAGTGG
TGGTGTTGCCACCTCTGCCGGTACTTCAGTGATG

consensusID : consensus_5644#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 390
fasta sequence

                              [ATGGATTACTATTTTCAATTCTGATACATTAGAAAGGTTAAGAATTTTGAGATTTGATCGATCAGTATGCCCAATTCACACATGTCCTACCAATTACTTACCAGTAATGAGCCGTTGTGGATCAAGGATAGCTTTAATTACACGACAAGCAGTGGGATATTATAATAGTACTAGTAATCAGAACGCCAGTAATAATTCACGTGAATACTTGTTTTCCAGCTGTAAGACTCTTCCTGTATCTTTAAGGCACTCCGTCCCATCTGTAAGCGTAGAAAGCTGTTCTAATTCACAGTGGGTGAATAACAAAGGTGCTAGTCAAGAAAACAGCAAAGAAATTTCAACAAAAAGAACTGAATCCAAGAAGCAACAACCGTTTATATCTCCAACCTG]

[+] EMBL CD179544             [ATGGATTACTATTTTCAATTCTGATACATTAGAAAGGTTAAGAATTTTGAGATTTGATCGATCAGTATGCCCAATTCACACATGTCCTACCAATTACTTACCAGTAATGAGCCGTTGTGGATCAAGGATAGCTTTAATTACACGACAAGCAGTGGGATATTATAATAGTACTAGTAATCAGAACGCCAGTAATAATTCACGTGAATACTTGTTTTCCAGCTGTAAGACTCTTCCTGTATCTTTAAGGCACTCCGTCCCATCTGTAAGCGTAGAAAGCTGTTCTAATTCACAGTGGGTGAATAACAAAGGTGCTAGTCAAGAAAACAGCAAAGAAATTTCAACAAAAAGAACTGAATCCAAGAAGCAACAACCGTTTATATCTCCAACCTG]




>consensus_5644#1
ATGGATTACTATTTTCAATTCTGATACATTAGAAAGGTTAAGAATTTTGAGATTTGATCG
ATCAGTATGCCCAATTCACACATGTCCTACCAATTACTTACCAGTAATGAGCCGTTGTGG
ATCAAGGATAGCTTTAATTACACGACAAGCAGTGGGATATTATAATAGTACTAGTAATCA
GAACGCCAGTAATAATTCACGTGAATACTTGTTTTCCAGCTGTAAGACTCTTCCTGTATC
TTTAAGGCACTCCGTCCCATCTGTAAGCGTAGAAAGCTGTTCTAATTCACAGTGGGTGAA
TAACAAAGGTGCTAGTCAAGAAAACAGCAAAGAAATTTCAACAAAAAGAACTGAATCCAA
GAAGCAACAACCGTTTATATCTCCAACCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5644#0      --GCATCACTGCAACAAAAAGAACTGAATCCAAGAAGCCCATGTTGGGCAGCACTGCAAC 58
consensus_5644#1      ATGGATTACTATTTTCAATTCTGATACATTAGAAAGGTTAAGAATTTTGAG-ATTTGATC 59
                        * ** ***      **      *  **   * * *   *   *    ** * *  * *

consensus_5644#0      AAAAAGAA--CTGAATCCAAGAAGCAACAACCGTTTATATCTCCAACCTGTTTGCTTATT 116
consensus_5644#1      GATCAGTATGCCCAATTCACACATGTCCTACCAATTACTTACCAGTAATGAGCCGTTGTG 119
                       *  ** *  *  *** **   *    * ***  ***  *  *     **     ** * 

consensus_5644#0      CAACCACGAAATCTTAATTTGAGTCATCACCTATCTACT-TCATTACCATCTCCGTTGTC 175
consensus_5644#1      GATCAAGGATAGCTTTAATTACACGACAAGCAGTGGGATATTATAATAGTACTAGTAATC 179
                       * * * ** * *** * **     *  * *  *    * * ** *   *    **  **

consensus_5644#0      AAAAGTTCACTTGTCTTCCGGAAGTTCACCATTTCGACAA-TGACTGGTTGTTCAAGTTT 234
consensus_5644#1      AGAACGCCAGTAATAATTCACGTGAATACTTGTTTTCCAGCTGTAAGACTCTTCCTGTAT 239
                      * **   ** *  *  * *    *   **   **   **  **   *  * ***  ** *

consensus_5644#0      AGAGTTAAGTGTTTCTTCCTATCGTCCAATGGCTGTTTCCTTTGAATCTTCTTTTATTGG 294
consensus_5644#1      CTT-TAAGGCACTCCGTCCCATCTGTAAGCG---------TAGAAAGCTGTTCTAATTCA 289
                          * * *   * * *** ***    *  *         *   ** **  * * ***  

consensus_5644#0      AACTCAGTGTAATTCCTCAGGTAGTTGT-ACTGCCGCAGTATCCACATGT-ACCAGTAAT 352
consensus_5644#1      CAGTGGGTG-AATAACAAAGGTGCTAGTCAAGAAAACAGCAAAGAAATTTCAACAAAAAG 348
                       * *  *** ***  *  ****  * ** *      *** *   * ** * * **  ** 

consensus_5644#0      AGTAGTGGTGGTGTTGCCACCTCTGCCGGTACTTCAGTGATG 394
consensus_5644#1      AACTGAATCCAAGAAGCAACAACCGTTTATATCTCCAACCTG 390
                      *   *       *  ** **  * *    **  **     **