cluster # 5649

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Schistosoma mansoni
cluster # 5649 cluster # 5649 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5649#0 length = 556 sequences # 2

consensus_5649#1 length = 465 sequences # 1

consensusID : consensus_5649#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 556
fasta sequence

                              [GATGTTCGGTATAATTTATTA-GCTGTTGTACCAGATCGTCGTGTAGCGCTTACAAAACGCATGCAAATGTTGAAACGTAATCGTCAACTTATTCAAGATATTCTGTTGCGTATGTGTCAGTTTGATCATACGTCCAAATCACTACATTGTTCTAATAGTAATAATATTAC-TGTTACTA-CTGCTACTACTACTATTACTACTACAACTGTTTCTATCAATCATGAACATCCACGTAATCAATCTAATTGTCATCGTCACCTTATTCAAGAGGAGTATAAATCAAGTCCATCTGAACATTTTATCAATGATGACAACTGTGTACATCTGCCAAACTCATCTTTATCTGTGGGGAAACAATATAACCCTCCATGCATAGAGAAATGTTCACCTACAAGCACAAATATGTCTAATTGTACTAACAGTACTAATACCAACAGTAACAATCTTGATAAAAACAAACATGAACCATCTGATGACTTTGAGAACTCACGTTCCATCANAACTCGTTCAGCGACACGTGCTGCCAAACAAACAATTTATGAGAACCACAACTATC]

[+] EMBL CD154302             [GATGTTCGGTATAATTTATTA GCTGTTGTACCAGATCGTCGTGTAGCGCTTACAAAACGCATGCAAATGTTGAAACGTAATCGTCAACTTATTCAAGATATTCTGTTGCGTATGTGTCAGTTTGATCATACGTCCAAATCACTACATTGTTCTAATAGTAATAATATTAC TGTTACTA CTGCTACTACTACTATTACTACTACAACTGTTTCTATCAATCATGAACATCCACGTAATCAATCTAATTGTCATCGTCACCTTATTCAAGAGGAGTATAAATCAAGTCCATCTGAACATTTTATCAATGATGACAACTGTGTACATCTGCCAAACTCATCTTTATCTGTGGGGAAACAATATAACCCTCCATGCATAGAGAAATGTTCACCTACAAGCACAAATATGTCTAATTGTACTAACAGTACTAATACCAACAGTAACAATCTTGATAAAAACAAACATGAACCATCTGATGACTTTGAGAACTCACGTTCCATCANAACTCGTTCAGCGACACGTGCTGCCAAACAAACAATTTATGAGAACCACAACTATC]
[+] EMBL CD154303             [GATGTTCGGTATAATTTATTATGCTGTTGTACCAGATCGTCGTGTAGCGCTTACAAAACGCATGCAAATGTTGAAACGTAATCGTCAACTTATTCAAGATATTCTGTTGCGTATGTGTCAGTTTGATCATACGTCCAAATCACTACATTGTTCTAATAGTAATAATATTACATGTTACTATCTGCTACTACTACTATTACTACTACAACTGTTTCTATCAATCATGAACATCCACGTAATCAATCTAATTGTCATCGTCACCTTATTCAAGAGGAGTATAAATCAAGCCCATCTGAACATTTTATCACTGATGACAACTGTGTACATCTGCCAAACTCATCTTTATCTGTGGGGAAACAATATAACCCTCCATGCATAGAGAAATGTTCACCTACAAGCACAGATATGTCTAATTGTACTATCAGGACTAATACCAACAGTA                                                                                                                     ]




>consensus_5649#0
GATGTTCGGTATAATTTATTAGCTGTTGTACCAGATCGTCGTGTAGCGCTTACAAAACGC
ATGCAAATGTTGAAACGTAATCGTCAACTTATTCAAGATATTCTGTTGCGTATGTGTCAG
TTTGATCATACGTCCAAATCACTACATTGTTCTAATAGTAATAATATTACTGTTACTACT
GCTACTACTACTATTACTACTACAACTGTTTCTATCAATCATGAACATCCACGTAATCAA
TCTAATTGTCATCGTCACCTTATTCAAGAGGAGTATAAATCAAGTCCATCTGAACATTTT
ATCAATGATGACAACTGTGTACATCTGCCAAACTCATCTTTATCTGTGGGGAAACAATAT
AACCCTCCATGCATAGAGAAATGTTCACCTACAAGCACAAATATGTCTAATTGTACTAAC
AGTACTAATACCAACAGTAACAATCTTGATAAAAACAAACATGAACCATCTGATGACTTT
GAGAACTCACGTTCCATCANAACTCGTTCAGCGACACGTGCTGCCAAACAAACAATTTAT
GAGAACCACAACTATC

consensusID : consensus_5649#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 465
fasta sequence

                              [TAATATACTTGTTACTACTGCTACTACTACTATTATTACAACAACTGTTTTATCCAATCATGAACATCCACGTAATCAATCTAATTGTCATCGTCACCTTATTCAAGGAGGAATATAAATCAAGTCCATCTGAACATTTTATCAATGATGACAACTGTGTACATCTGCCAAACTCATCTTTATCTGTGGGGAAACAATATAACCCTCCATGCATAGAGAAATGTTCACCTACAAGCACAAATATGTCTAATTGTACTAACAGTACTAATACCAACAGTAACAATCTTGATAAAAACAAGTAGGATATAATTTCTCAGAGTGGTGCTTCTGTGGCTTGTTTGATTCAAGATTGCGGATGTGTGTATTCGAATTACATCGGACTCAGTACTTCTTTTGAACATCTGAATCTGTAATTTAGTAATCCCTAATAAATATATATGTCCTGACTTTTAAAAAAAAAAAAAA]

[-] EMBL AI395511             [TAATATACTTGTTACTACTGCTACTACTACTATTATTACAACAACTGTTTTATCCAATCATGAACATCCACGTAATCAATCTAATTGTCATCGTCACCTTATTCAAGGAGGAATATAAATCAAGTCCATCTGAACATTTTATCAATGATGACAACTGTGTACATCTGCCAAACTCATCTTTATCTGTGGGGAAACAATATAACCCTCCATGCATAGAGAAATGTTCACCTACAAGCACAAATATGTCTAATTGTACTAACAGTACTAATACCAACAGTAACAATCTTGATAAAAACAAGTAGGATATAATTTCTCAGAGTGGTGCTTCTGTGGCTTGTTTGATTCAAGATTGCGGATGTGTGTATTCGAATTACATCGGACTCAGTACTTCTTTTGAACATCTGAATCTGTAATTTAGTAATCCCTAATAAATATATATGTCCTGACTTTTAAAAAAAAAAAAAA]




>consensus_5649#1
TAATATACTTGTTACTACTGCTACTACTACTATTATTACAACAACTGTTTTATCCAATCA
TGAACATCCACGTAATCAATCTAATTGTCATCGTCACCTTATTCAAGGAGGAATATAAAT
CAAGTCCATCTGAACATTTTATCAATGATGACAACTGTGTACATCTGCCAAACTCATCTT
TATCTGTGGGGAAACAATATAACCCTCCATGCATAGAGAAATGTTCACCTACAAGCACAA
ATATGTCTAATTGTACTAACAGTACTAATACCAACAGTAACAATCTTGATAAAAACAAGT
AGGATATAATTTCTCAGAGTGGTGCTTCTGTGGCTTGTTTGATTCAAGATTGCGGATGTG
TGTATTCGAATTACATCGGACTCAGTACTTCTTTTGAACATCTGAATCTGTAATTTAGTA
ATCCCTAATAAATATATATGTCCTGACTTTTAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5649#0      GATGTTCGGTATAATTTATTAGCTGTTGTACCAGATCGTCGTGTAGCGCTTACAAAACGC 60
consensus_5649#1      ------------------------------------------------------------
                                                                                  

consensus_5649#0      ATGCAAATGTTGAAACGTAATCGTCAACTTATTCAAGATATTCTGTTGCGTATGTGTCAG 120
consensus_5649#1      ------------------------------------------------------------
                                                                                  

consensus_5649#0      TTTGATCATACGTCCAAATCACTACATTGTTCTAATAGTAATAATATTACTGTTACTACT 180
consensus_5649#1      -----------------------------------------TAATATACTTGTTACTACT 19
                                                               ******   **********

consensus_5649#0      GCTACTACTACTATTACTACTACAACTGTTTCTATCAATCATGAACATCCACGTAATCAA 240
consensus_5649#1      GCTACTACTACTATTATTACAACAACTGTTTTATCCAATCATGAACATCCACGTAATCAA 79
                      **************** *** **********    *************************

consensus_5649#0      TCTAATTGTCATCGTCACCTTATTCAAG-AGGAGTATAAATCAAGTCCATCTGAACATTT 299
consensus_5649#1      TCTAATTGTCATCGTCACCTTATTCAAGGAGGAATATAAATCAAGTCCATCTGAACATTT 139
                      **************************** **** **************************

consensus_5649#0      TATCAATGATGACAACTGTGTACATCTGCCAAACTCATCTTTATCTGTGGGGAAACAATA 359
consensus_5649#1      TATCAATGATGACAACTGTGTACATCTGCCAAACTCATCTTTATCTGTGGGGAAACAATA 199
                      ************************************************************

consensus_5649#0      TAACCCTCCATGCATAGAGAAATGTTCACCTACAAGCACAAATATGTCTAATTGTACTAA 419
consensus_5649#1      TAACCCTCCATGCATAGAGAAATGTTCACCTACAAGCACAAATATGTCTAATTGTACTAA 259
                      ************************************************************

consensus_5649#0      CAGTACTAATACCAACAGTAACAATCTTGATAAAAACAAACATGAACCATCTGATGACTT 479
consensus_5649#1      CAGTACTAATACCAACAGTAACAATCTTGATAAAAACAAGTAGGA----TATAATTTCTC 315
                      ***************************************  * **    * * **  ** 

consensus_5649#0      TGAGAACTCACGTTCCATCANAACTCGTTCAGCGACACGTGCTGCCAAACAAACAATTTA 539
consensus_5649#1      AGAGTGGTGCTTCTGTGGCTTGTTTGATTCAAGATTGCGGATGTGTGTATTCGAATTACA 375
                       ***   *     *    *     *  ****      **         *     * *  *

consensus_5649#0      TGAGAACCACAACTATC------------------------------------------- 556
consensus_5649#1      TCGGACTCAGTACTTCTTTTGAACATCTGAATCTGTAATTTAGTAATCCCTAATAAATAT 435
                      *  **  **  ***                                              

consensus_5649#0      ------------------------------
consensus_5649#1      ATATGTCCTGACTTTTAAAAAAAAAAAAAA 465