These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5668#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 671 fasta sequence [GCCATAAAAACTGTATAAATCTTTCTCTGTAAAATAAGGTCACGCCTCTCCCTGAACCAATTGAATAATTTTTAAAAAAAACGGGTTGAAATATAAATAAAAGAAATTCAAAACAATTTTAACTAAGAAAGTCTAGTCTGTACAATGTGGAGGAGTATTGACAATGCTTTAATCTTCATCTTCTTCAGATAAACATACACGTTCTACTACACGACGTTGGGGTTTAATCTGAGCTTTCTCCTTGCGTTTTTTCTCCGCTAAAGTCTTCGTTTCACTAGGAGGTTTTTTCACAGATTGCCTCCGTCGAGGCTGACGTAGTTTAGGTAATTCAGAAAGTAGGCTATTTTCATCTTTCACTGGTGTTGTATGCTGTGAAGAGTTGGGAGCTTTAAGAGATTGATCTGTTGTTCTTTGATTTCGCAAGCGACTGGCTGCGTGACGAACGCGCTTACTCGGTACCGTCACTTCATCCAACTCTGATGAATCAACGTGATGAGAAGCAATTTCTGATTTTTGGCAAAGCTTTTGATTCTCAATCTGGAAAAAGTTTGTTATGAGCGATTTGGACGAAAGAATTCCTCTAGGATTACCAAGCTCCACATTTTGTCTACGTTTGAGTACAGAAGCCAATAAAGCTTCTGTTTTTTCAGNTATTCACATNCCCAGTAAGG] [+] EMBL CD075475 [GCCATAAAAACTGTATAAATCTTTCTCTGTAAAATAAGGTCACGCCTCTCCCTGAACCAATTGAATAATTTTTAAAAAAAACGGGTTGAAATATAAATAAAAGAAATTCAAAACAATTTTAACTAAGAAAGTCTAGTCTGTACAATGTGGAGGAGTATTGACAATGCTTTAATCTTCATCTTCTTCAGATAAACATACACGTTCTACTACACGACGTTGGGGTTTAATCTGAGCTTTCTCCTTGCGTTTTTTCTCCGCTAAAGTCTTCGTTTCACTAGGAGGTTTTTTCACAGATTGCCTCCGTCGAGGCTGACGTAGTTTAGGTAATTCAGAAAGTAGGCTATTTTCATCTTTCACTGGTGTTGTATGCTGTGAAGAGTTGGGAGCTTTAAGAGATTGATCTGTTGTTCTTTGATTTCGCAAGCGACTGGCTGCGTGACGAACGCGCTTACTCGGTACCGTCACTTCATCCAACTCTGATGAATCAACGTGATGAGAAGCAATTTCTGATTTTTGGCAAAGCTTTTGATTCTCAATCTGGAAAAAGTTTGTTATGAGCGATTTGGACGAAAGAATTCCTCTAGGATTACCAAGCTCCACATTTTGTCTACGTTTGAGTACAGAAGCCAA ] [-] EMBL CD081741 [ TAAATAAAAGAAATTCAAAACAATTTTAACTAAGAAAGTCTAGTCTGTACAATGTGGAGGAGTATTGACAATGCTTTAATCTTCATCTTCTTCAGATAAACATACACGTTCTACTACACGACGTTGGGGTTTAATCTGAGCTTTCTCCTTGCGTTTTTTCTCCGCTAAAGTCTTCGTTTCACTAGGAGGTTTTTTCACAGATTGCCTCCGTCGAGGCTGACGTAGTTTAGGTAATTCAGAAAGTAGGCTATTTTCATCTTTCACTGGTGTTGTATGCTGTGAAGAGTTGGGAGCTTTAAGAGATTGATCTGTTGTTCTTTGATTTCGCAAGCGACTGGCTGCGTGACGAACGCGCTTACTCGGTACCGTCACTTCATCCAACTCTGATGAATCAACGTGATGAGAAGCAATTTCTGATTTTTGGCAAAGCTTTTGATTCTCAATCTGGAAAAAGTTTGTTATGAGCGATTTGGACGAAAGAATTCCTCTAGGATTACCAAGCTCCACATTTTGTCTACGTTTGAGTACAGAAGCCAATAAAGCTTCTGTTTTTTCAGNTATTCACATNCCCAGTAAGG] consensusID : consensus_5668#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence [TTTTTTTTTTTTTTTTGTTGCTAAAAAAACTGTATTTTTTATTTCTCTGTAAAATAAGGTCACGCCTCTCACTGAACAAATTGAATAATTTAAAAAAAAAACGGGTTGAAATATAAATAAAAGAAATTCAAGACAATTTTAACTAAGAAAGTCTAGTCTGTACAATGTGGAGGAGTATTGACAATGCTTTAATCTTCAGCTTCTACAGATAAACATACACGTGCTACTACACGAAGTTGGGGTTTAATCTGAACTATCTCCTTGAGGTTTTTCGCATCTAAAGGCATC] [+] EMBL AI394921 [TTTTTTTTTTTTTTTTGTTGCTAAAAAAACTGTATTTTTTATTTCTCTGTAAAATAAGGTCACGCCTCTCACTGAACAAATTGAATAATTTAAAAAAAAAACGGGTTGAAATATAAATAAAAGAAATTCAAGACAATTTTAACTAAGAAAGTCTAGTCTGTACAATGTGGAGGAGTATTGACAATGCTTTAATCTTCAGCTTCTACAGATAAACATACACGTGCTACTACACGAAGTTGGGGTTTAATCTGAACTATCTCCTTGAGGTTTTTCGCATCTAAAGGCATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5668#0 -------------------GCCATAAAAACTGTATAAATC-TTTCTCTGTAAAATAAGGT 40 consensus_5668#1 TTTTTTTTTTTTTTTTGTTGCTAAAAAAACTGTATTTTTTATTTCTCTGTAAAATAAGGT 60 ** * *********** * ******************* consensus_5668#0 CACGCCTCTCCCTGAACCAATTGAATAATTTTTAAAAAAAACGGGTTGAAATATAAATAA 100 consensus_5668#1 CACGCCTCTCACTGAACAAATTGAATAATTTAAAAAAAAAACGGGTTGAAATATAAATAA 120 ********** ****** ************* *************************** consensus_5668#0 AAGAAATTCAAAACAATTTTAACTAAGAAAGTCTAGTCTGTACAATGTGGAGGAGTATTG 160 consensus_5668#1 AAGAAATTCAAGACAATTTTAACTAAGAAAGTCTAGTCTGTACAATGTGGAGGAGTATTG 180 *********** ************************************************ consensus_5668#0 ACAATGCTTTAATCTTCATCTTCTTCAGATAAACATACACGTTCTACTACACGACGTTGG 220 consensus_5668#1 ACAATGCTTTAATCTTCAGCTTCTACAGATAAACATACACGTGCTACTACACGAAGTTGG 240 ****************** ***** ***************** *********** ***** consensus_5668#0 GGTTTAATCTGAGCTTTCTCCTTGCGTTTTTTCTCCGCTAAAGTCTTCGTTTCACTAGGA 280 consensus_5668#1 GGTTTAATCTGAACTATCTCCTTGAGGTTTTTCGCATCTAAAGGCATC------------ 288 ************ ** ******** * ****** * ****** * ** consensus_5668#0 GGTTTTTTCACAGATTGCCTCCGTCGAGGCTGACGTAGTTTAGGTAATTCAGAAAGTAGG 340 consensus_5668#1 ------------------------------------------------------------ consensus_5668#0 CTATTTTCATCTTTCACTGGTGTTGTATGCTGTGAAGAGTTGGGAGCTTTAAGAGATTGA 400 consensus_5668#1 ------------------------------------------------------------ consensus_5668#0 TCTGTTGTTCTTTGATTTCGCAAGCGACTGGCTGCGTGACGAACGCGCTTACTCGGTACC 460 consensus_5668#1 ------------------------------------------------------------ consensus_5668#0 GTCACTTCATCCAACTCTGATGAATCAACGTGATGAGAAGCAATTTCTGATTTTTGGCAA 520 consensus_5668#1 ------------------------------------------------------------ consensus_5668#0 AGCTTTTGATTCTCAATCTGGAAAAAGTTTGTTATGAGCGATTTGGACGAAAGAATTCCT 580 consensus_5668#1 ------------------------------------------------------------ consensus_5668#0 CTAGGATTACCAAGCTCCACATTTTGTCTACGTTTGAGTACAGAAGCCAATAAAGCTTCT 640 consensus_5668#1 ------------------------------------------------------------ consensus_5668#0 GTTTTTTCAGNTATTCACATNCCCAGTAAGG 671 consensus_5668#1 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||