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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5675#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2131 fasta sequence
[TTACCTTTCCTCTGTCACTAGAAATTTCAAGTATCTAAGTAAAAATTTTAATCAACACTAATGACGCGATCAGAAACAAAACTGCCGACAGTTGATCGCATTGTCACAAGTGTACCTTCTCCTCCGAGCAAATTAATGCCTTCAAGTACGGTGTTCGATTCTAAGGGTCGTCCTCAATTAGATATAATTGGACCACATTTAATTTCTGAGGGACGACTGACAGAAGAAGCAATACTAAGAATTATTAATGATTGTTCAGCCATCTTAAAATCAGAAAAAACTATGCTTGAATTAGAAGCTCCAATAACAATCTGTGGTGATATACATGGTCAATTTTACGATCTAATGAAACTTTTCGAAGTTGGCGGTCCGCCTGAAACAACACGTTATCTCTTTCTTGGAGATTATGTTGACAGAGGTTATTTTAGCTTAGAGTGTGTAATCTACTTGTTTAGTTTGAAAATTCTACATCCACGCAGTCTGTTTCTTCTACGAGGCAATCATGAATGTCGTCATTTAACACAATATTTTACATTCCGACAAGAGTGTATCATGAAGAGTACGGAACAGGTTTATGAAGCTTGTATGGAAGCATTTGATCTTTTACCATTAGCTGCATTGATCAATCAACAATTTTTATGTGTACATGGTGGACTATCACCTGAATTGCATACATTAAATGATATACGTAAGTTGGATCGATTTAAAGAACCACCGGCATTTGGTGCAATGTGTGATTTATTATGGGCTGATCCATGTGAAGATTTTGGTCAAGAAAGAAATTCAGAACATTTCAGTCATAATACAGTCCGTGGATGCTCATATTTCTACAGCTTTAATGCATGTTGTCATTTTTTACAAGCTAATAATTTACTGTCTATTATACGAGCCCATGAAGCACAAGATGCCGGTTATCGAATGTACAGAAAAAGTCGACAAACTGGATTTCCTGCTTTAATTACTATTTTCTCAGCACCCAATTATTTAGATGTGTATAATAATAAAGCCGCTATATTAAAATATGAAAATAATGTAATGCTAATACGTCAGTTTAACTGTTCACCACATCCATATTGGTTGCGGAATTTCATGGATGTATTTACTTGGTCATTACCATTTGTTGGTGAAAAAGTTACCGAAATGTTAGTCAATGTACTTAATATATGTTCAGATGATGAACTACTGTCGGATACACCAGAAGATGAATCACAAATCACAGCACGTAAAGATGTTATCAGGAATAAAATTCGAGCAATTGGTAAAATGGCCCGTGTATTCACTGTATTAAGAGAGGAGAGTGAAACTATACTTGAACTCAAAGGACTTACTCCAACTGGTATGCTTCCATTAGGAGCATTAGCCGGTGGTCGAGAAGCTATCAAAGCTGTTTCTGGAACATGGACACCGCATAAAATTCAATGTTTTGAAGAAGCGAAAGCATTTGACAAAGTCAATGAACGAATGCCACCACATTTAGATATGAATTCTAAGCGATGTTGGCCATATTCTTCCACAACATCAATTAATACAAATGATGAACAAGAAAATAAATTGTCTGATTCACATATTATCATTAATCGTGAGCCACTTGTAAACGATGATAATGATTCTCTACTTACACCCAGCTCACAAAAACCAGTGCCAAGACCACCATCGATTTGTGAAGAACACTCATCTGATGACGATAATGTTGGTGATGATGATACTGAAGCCAAAAATGATAGAAGAAAGCTCAAACAACAAATCAATACTGCTAATGATCTCAGATCAGCAAAATTAACTGATCAACTTGATATAACCAACACATCGAGTGATCCCTACCAGTCGACTAGTTCTGCTGATTCAACAAAATCAAATAAAAATGATTTAACCAATACTACTAAAACTCCTAGTACTACTACTTCTACTATTAGTAGTAGTAGTAGTTCAACATTACAAAACAGAACAATTATAAGGACAATAACACCTAATAAATCAAAAAAGGACAACCTATAATCATCAATGCTTCCGTAGGGACATTCAATCTATCCACGTCCACTATGACTAATTCTGAAAATTTATATTTTACAACTAACTAACCAACTAATCAAACAGATATATAATCTATAATATACGTATATTTAGATACTCG]
[+] EMBL SMA276884 [TTACCTTTCCTCTGTCACTAGAAATTTCAAGTATCTAAGTAAAAATTTTAATCAACACTAATGACGCGATCAGAAACAAAACTGCCGACAGTTGATCGCATTGTCACAAGTGTACCTTCTCCTCCGAGCAAATTAATGCCTTCAAGTACGGTGTTCGATTCTAAGGGTCGTCCTCAATTAGATATAATTGGACCACATTTAATTTCTGAGGGACGACTGACAGAAGAAGCAATACTAAGAATTATTAATGATTGTTCAGCCATCTTAAAATCAGAAAAAACTATGCTTGAATTAGAAGCTCCAATAACAATCTGTGGTGATATACATGGTCAATTTTACGATCTAATGAAACTTTTCGAAGTTGGCGGTCCGCCTGAAACAACACGTTATCTCTTTCTTGGAGATTATGTTGACAGAGGTTATTTTAGCTTAGAGTGTGTAATCTACTTGTTTAGTTTGAAAATTCTACATCCACGCAGTCTGTTTCTTCTACGAGGCAATCATGAATGTCGTCATTTAACACAATATTTTACATTCCGACAAGAGTGTATCATGAAGAGTACGGAACAGGTTTATGAAGCTTGTATGGAAGCATTTGATCTTTTACCATTAGCTGCATTGATCAATCAACAATTTTTATGTGTACATGGTGGACTATCACCTGAATTGCATACATTAAATGATATACGTAAGTTGGATCGATTTAAAGAACCACCGGCATTTGGTGCAATGTGTGATTTATTATGGGCTGATCCATGTGAAGATTTTGGTCAAGAAAGAAATTCAGAACATTTCAGTCATAATACAGTCCGTGGATGCTCATATTTCTACAGCTTTAATGCATGTTGTCATTTTTTACAAGCTAATAATTTACTGTCTATTATACGAGCCCATGAAGCACAAGATGCCGGTTATCGAATGTACAGAAAAAGTCGACAAACTGGATTTCCTGCTTTAATTACTATTTTCTCAGCACCCAATTATTTAGATGTGTATAATAATAAAGCCGCTATATTAAAATATGAAAATAATGTAATGCTAATACGTCAGTTTAACTGTTCACCACATCCATATTGGTTGCGGAATTTCATGGATGTATTTACTTGGTCATTACCATTTGTTGGTGAAAAAGTTACCGAAATGTTAGTCAATGTACTTAATATATGTTCAGATGATGAACTACTGTCGGATACACCAGAAGATGAATCACAAATCACAGCACGTAAAGATGTTATCAGGAATAAAATTCGAGCAATTGGTAAAATGGCCCGTGTATTCACTGTATTAAGAGAGGAGAGTGAAACTATACTTGAACTCAAAGGACTTACTCCAACTGGTATGCTTCCATTAGGAGCATTAGCCGGTGGTCGAGAAGCTATCAAAGCTGTTTCTGGAACATGGACACCGCATAAAATTCAATGTTTTGAAGAAGCGAAAGCATTTGACAAAGTCAATGAACGAATGCCACCACATTTAGATATGAATTCTAAGCGATGTTGGCCATATTCTTCCACAACATCAATTAATACAAATGATGAACAAGAAAATAAATTGTCTGATTCACATATTATCATTAATCGTGAGCCACTTGTAAACGATGATAATGATTCTCTACTTACACCCAGCTCACAAAAACCAGTGCCAAGACCACCATCGATTTGTGAAGAACACTCATCTGATGACGATAATGTTGGTGATGATGATACTGAAGCCAAAAATGATAGAAGAAAGCTCAAACAACAAATCAATACTGCTAATGATCTCAGATCAGCAAAATTAACTGATCAACTTGATATAACCAACACATCGAGTGATCCCTACCAGTCGACTAGTTCTGCTGATTCAACAAAATCAAATAAAAATGATTTAACCAATACTACTAAAACTCCTAGTACTACTACTTCTACTATTAGTAGTAGTAGTAGTTCAACATTACAAAACAGAACAATTATAAGGACAATAACACCTAATAAATCAAAAAAGGACAACCTATAATCATCAATGCTTCCGTAGGGACATTCAATCTATCCACGTCCACTATGACTAATTCTGAAAATTTATATTTTACAACTAACTAACCAACTAATCAAACAGATATATAATCTATAATATACGTATATTTAGATACTCG]
[+] EMBL CD063681 [ TTAGTCAATGTACTTAATATATGTTCAGATGATGAACTACTGTCGGATACACCAGAAGATGAATCACAAATCACAGCACGTAAAGATGTTATCAGGAATAAAATTCGAGCAATTGGTAAAATGGCCCGTGTATTCACTGTATTAAGAGAGGAGAGTGAAACTATACTTGAACTCAAAGGACTTACTCCAACTGGTATGCTTCCATTAGGAGCATTAGCCGGTGGTCGAGAAGCTATCAAAGCTGTTTCTGGAACATGGACACCGCATAAAATTCGATGTTTTGAAGAAGCGAAAGCATTTGACAAAGTCAATGAACGAATGCCACCACATTTAGATATGAATTCTAAGCGATGTTGGCCATATTCTTCCACAACATCGATTAATACAAATGATGAACAAGAAAATAAATTGTCTGATTCACATATTATCATTAATCGTGAGCCACTTGTAAACGATGATAATGATTCTCTACTTACACCCAGCTCACAAAAACCAGTGCCAAGAACACCAT ]
consensusID : consensus_5675#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence
[GTCCTCAATTAGATATAATTGGACCACATTTAATTTCTGAGGGACGACTGACAGAAGAAGCAATACTAAGAATTATTAATGATTGTTCAGCCATCTTAAAATCAGAAAAAACTATGCTTGAATTAGAAGCTCCAATAACAATCTGTGGTGATATACATGGTCAATTTTACGATCTAATGAAACTTTTCGAAGTTGGCGGTCCGCCTGAAACAACACGTTATCTCTTTCTTGGAGATTATGTTGACAGAGGTTATTTTAGCTTAGAGTGTGTAATCTACTTGTTTAGTTTGAAAATTCTACATCCACGCAGTCTGTTTCTTCTACGTGGCAATCATGAATGTCGTCATTTAACACAATATTTTACATTCCGACAAGAGTGTATCATGAAGAGTACGGAACAGGTTTATGAAGCTTGTATGGAAGCATTTGATCTTTTACCATTAGCTGCATTGATCAATCAACAATTTTTATGTGTACATGGTGGACTATCACCTGAATTGCATACATTAAATGATATACGTAAGGAAATGGGTTTTTTTA]
[+] EMBL CD184308 [GTCCTCAATTAGATATAATTGGACCACATTTAATTTCTGAGGGACGACTGACAGAAGAAGCAATACTAAGAATTATTAATGATTGTTCAGCCATCTTAAAATCAGAAAAAACTATGCTTGAATTAGAAGCTCCAATAACAATCTGTGGTGATATACATGGTCAATTTTACGATCTAATGAAACTTTTCGAAGTTGGCGGTCCGCCTGAAACAACACGTTATCTCTTTCTTGGAGATTATGTTGACAGAGGTTATTTTAGCTTAGAGTGTGTAATCTACTTGTTTAGTTTGAAAATTCTACATCCACGCAGTCTGTTTCTTCTACGTGGCAATCATGAATGTCGTCATTTAACACAATATTTTACATTCCGACAAGAGTGTATCATGAAGAGTACGGAACAGGTTTATGAAGCTTGTATGGAAGCATTTGATCTTTTACCATTAGCTGCATTGATCAATCAACAATTTTTATGTGTACATGGTGGACTATCACCTGAATTGCATACATTAAATGATATACGTAAGGAAATGGGTTTTTTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5675#0 TTACCTTTCCTCTGTCACTAGAAATTTCAAGTATCTAAGTAAAAATTTTAATCAACACTA 60
consensus_5675#1 ------------------------------------------------------------
consensus_5675#0 ATGACGCGATCAGAAACAAAACTGCCGACAGTTGATCGCATTGTCACAAGTGTACCTTCT 120
consensus_5675#1 ------------------------------------------------------------
consensus_5675#0 CCTCCGAGCAAATTAATGCCTTCAAGTACGGTGTTCGATTCTAAGGGTCGTCCTCAATTA 180
consensus_5675#1 -------------------------------------------------GTCCTCAATTA 11
***********
consensus_5675#0 GATATAATTGGACCACATTTAATTTCTGAGGGACGACTGACAGAAGAAGCAATACTAAGA 240
consensus_5675#1 GATATAATTGGACCACATTTAATTTCTGAGGGACGACTGACAGAAGAAGCAATACTAAGA 71
************************************************************
consensus_5675#0 ATTATTAATGATTGTTCAGCCATCTTAAAATCAGAAAAAACTATGCTTGAATTAGAAGCT 300
consensus_5675#1 ATTATTAATGATTGTTCAGCCATCTTAAAATCAGAAAAAACTATGCTTGAATTAGAAGCT 131
************************************************************
consensus_5675#0 CCAATAACAATCTGTGGTGATATACATGGTCAATTTTACGATCTAATGAAACTTTTCGAA 360
consensus_5675#1 CCAATAACAATCTGTGGTGATATACATGGTCAATTTTACGATCTAATGAAACTTTTCGAA 191
************************************************************
consensus_5675#0 GTTGGCGGTCCGCCTGAAACAACACGTTATCTCTTTCTTGGAGATTATGTTGACAGAGGT 420
consensus_5675#1 GTTGGCGGTCCGCCTGAAACAACACGTTATCTCTTTCTTGGAGATTATGTTGACAGAGGT 251
************************************************************
consensus_5675#0 TATTTTAGCTTAGAGTGTGTAATCTACTTGTTTAGTTTGAAAATTCTACATCCACGCAGT 480
consensus_5675#1 TATTTTAGCTTAGAGTGTGTAATCTACTTGTTTAGTTTGAAAATTCTACATCCACGCAGT 311
************************************************************
consensus_5675#0 CTGTTTCTTCTACGAGGCAATCATGAATGTCGTCATTTAACACAATATTTTACATTCCGA 540
consensus_5675#1 CTGTTTCTTCTACGTGGCAATCATGAATGTCGTCATTTAACACAATATTTTACATTCCGA 371
************** *********************************************
consensus_5675#0 CAAGAGTGTATCATGAAGAGTACGGAACAGGTTTATGAAGCTTGTATGGAAGCATTTGAT 600
consensus_5675#1 CAAGAGTGTATCATGAAGAGTACGGAACAGGTTTATGAAGCTTGTATGGAAGCATTTGAT 431
************************************************************
consensus_5675#0 CTTTTACCATTAGCTGCATTGATCAATCAACAATTTTTATGTGTACATGGTGGACTATCA 660
consensus_5675#1 CTTTTACCATTAGCTGCATTGATCAATCAACAATTTTTATGTGTACATGGTGGACTATCA 491
************************************************************
consensus_5675#0 CCTGAATTGCATACATTAAATGATATACGTAAGTTGGATCGATTTAAAGAACCACCGGCA 720
consensus_5675#1 CCTGAATTGCATACATTAAATGATATACGTAAGG-AAATGGGTTTTTTTA---------- 540
********************************* ** * *** *
consensus_5675#0 TTTGGTGCAATGTGTGATTTATTATGGGCTGATCCATGTGAAGATTTTGGTCAAGAAAGA 780
consensus_5675#1 ------------------------------------------------------------
consensus_5675#0 AATTCAGAACATTTCAGTCATAATACAGTCCGTGGATGCTCATATTTCTACAGCTTTAAT 840
consensus_5675#1 ------------------------------------------------------------
consensus_5675#0 GCATGTTGTCATTTTTTACAAGCTAATAATTTACTGTCTATTATACGAGCCCATGAAGCA 900
consensus_5675#1 ------------------------------------------------------------
consensus_5675#0 CAAGATGCCGGTTATCGAATGTACAGAAAAAGTCGACAAACTGGATTTCCTGCTTTAATT 960
consensus_5675#1 ------------------------------------------------------------
consensus_5675#0 ACTATTTTCTCAGCACCCAATTATTTAGATGTGTATAATAATAAAGCCGCTATATTAAAA 1020
consensus_5675#1 ------------------------------------------------------------
consensus_5675#0 TATGAAAATAATGTAATGCTAATACGTCAGTTTAACTGTTCACCACATCCATATTGGTTG 1080
consensus_5675#1 ------------------------------------------------------------
consensus_5675#0 CGGAATTTCATGGATGTATTTACTTGGTCATTACCATTTGTTGGTGAAAAAGTTACCGAA 1140
consensus_5675#1 ------------------------------------------------------------
consensus_5675#0 ATGTTAGTCAATGTACTTAATATATGTTCAGATGATGAACTACTGTCGGATACACCAGAA 1200
consensus_5675#1 ------------------------------------------------------------
consensus_5675#0 GATGAATCACAAATCACAGCACGTAAAGATGTTATCAGGAATAAAATTCGAGCAATTGGT 1260
consensus_5675#1 ------------------------------------------------------------
consensus_5675#0 AAAATGGCCCGTGTATTCACTGTATTAAGAGAGGAGAGTGAAACTATACTTGAACTCAAA 1320
consensus_5675#1 ------------------------------------------------------------
consensus_5675#0 GGACTTACTCCAACTGGTATGCTTCCATTAGGAGCATTAGCCGGTGGTCGAGAAGCTATC 1380
consensus_5675#1 ------------------------------------------------------------
consensus_5675#0 AAAGCTGTTTCTGGAACATGGACACCGCATAAAATTCAATGTTTTGAAGAAGCGAAAGCA 1440
consensus_5675#1 ------------------------------------------------------------
consensus_5675#0 TTTGACAAAGTCAATGAACGAATGCCACCACATTTAGATATGAATTCTAAGCGATGTTGG 1500
consensus_5675#1 ------------------------------------------------------------
consensus_5675#0 CCATATTCTTCCACAACATCAATTAATACAAATGATGAACAAGAAAATAAATTGTCTGAT 1560
consensus_5675#1 ------------------------------------------------------------
consensus_5675#0 TCACATATTATCATTAATCGTGAGCCACTTGTAAACGATGATAATGATTCTCTACTTACA 1620
consensus_5675#1 ------------------------------------------------------------
consensus_5675#0 CCCAGCTCACAAAAACCAGTGCCAAGACCACCATCGATTTGTGAAGAACACTCATCTGAT 1680
consensus_5675#1 ------------------------------------------------------------
consensus_5675#0 GACGATAATGTTGGTGATGATGATACTGAAGCCAAAAATGATAGAAGAAAGCTCAAACAA 1740
consensus_5675#1 ------------------------------------------------------------
consensus_5675#0 CAAATCAATACTGCTAATGATCTCAGATCAGCAAAATTAACTGATCAACTTGATATAACC 1800
consensus_5675#1 ------------------------------------------------------------
consensus_5675#0 AACACATCGAGTGATCCCTACCAGTCGACTAGTTCTGCTGATTCAACAAAATCAAATAAA 1860
consensus_5675#1 ------------------------------------------------------------
consensus_5675#0 AATGATTTAACCAATACTACTAAAACTCCTAGTACTACTACTTCTACTATTAGTAGTAGT 1920
consensus_5675#1 ------------------------------------------------------------
consensus_5675#0 AGTAGTTCAACATTACAAAACAGAACAATTATAAGGACAATAACACCTAATAAATCAAAA 1980
consensus_5675#1 ------------------------------------------------------------
consensus_5675#0 AAGGACAACCTATAATCATCAATGCTTCCGTAGGGACATTCAATCTATCCACGTCCACTA 2040
consensus_5675#1 ------------------------------------------------------------
consensus_5675#0 TGACTAATTCTGAAAATTTATATTTTACAACTAACTAACCAACTAATCAAACAGATATAT 2100
consensus_5675#1 ------------------------------------------------------------
consensus_5675#0 AATCTATAATATACGTATATTTAGATACTCG 2131
consensus_5675#1 -------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||