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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5683#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence
[TTCAGCCAAATCCACTTTGGTCAAAACAAAGATAGTTCGTTTACCTGAAGGATCTACAGAAGATACTAGATCTGTTACATTGCTACGCTCAACATCGATACTCCCATCTTGAACACATAAAATAATCGCATTCGGATTGCTCATATATTGTCGAGCAACATCCTGTATAGTTTCACGTGTACCAGACTGCATACCCGTTGTTACAGTAGAAATGATGCCAGGTAGATCAACAAGAACCATCCTCTGAAGCCCAGGCCCTTTCACATTAAGGGAAATGACGTCAATACTGACTGTTTTACCACCACTAACAAGTGCCTTCATACGCATCTCTATCTCTTTCCTCAACGATGCAAGTTCCGATTCTTTTGTCAGATCATATTCACGTGAACCATCTTTGAATGAAGCAACATGGTATGGGCCCTCAGAAAGGGTTACTTTGACCGGAGATCGGGTCATCATTTCTCCACCGCCTCTTGGAAATATCCGAGCCTGTGCTATCATTTCTAAAACGGATGTTTTCCCAGAGCTCTGATCACCAACAACAACAACTCTTGGTAATTGGTCCTGGGCATTATATGCCGAATCCAAATCTGACAGTTCATCCAAAACTTCTGAATACATGTCGATCAAAGATNTGTTAATACGGGCCCTTTTGTAAAGATTTCTGCTGTGCGTTTTCTCCAACGAGT]
[+] EMBL CD200661 [TTCAGCCAAATCCACTTTGGTCAAAACAAAGATAGTTCGTTTACCTGAAGGATCTACAGAAGATACTAGATCTGTTACATTGCTACGCTCAACATCGATACTCCCATCTTGAACACATAAAATAATCGCATTCGGATTGCTCATATATTGTCGAGCAACATCCTGTATAGTTTCACGTGTACCAGACTGCATACCCGTTGTTACAGTAGAAATGATGCCAGGTAGATCAACAAGAACCATCCTCTGAAGCCCAGGCCCTTTCACATTAAGGGAAATGACGTCAATACTGACTGTTTTACCACCACTAACAAGTGCCTTCATACGCATCTCTATCTCTTTCCTCAACGATGCAAGTTCCGATTCTTTTGTCAGATCATATTCACGTGAACCATCTTTGAATGAAGCAACATGGTATGGGCCCTCAGAAAGGGTTACTTTGACCGGAGATCGGGTCATCATTTCTCCACCGCCTCTTGGAAATATCCGAGCCTGTGCTATCATTTCTAAAACGGATGTTTTCCCAGAGCTCTGATCACCAACAACAACAACTCTTGGTAATTGGTCCTGGGCATTATATGCCGAATCCAAATCTGACAGTTCATCCAAAACTTCTGAATACATGTCGATCAAAGATNTGTTAATACGGGCCCTTTTGTAAAGATTTCTGCTGTGCGTTTTCTCCAACGAGT]
consensusID : consensus_5683#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 539 fasta sequence
[TCAGAAAGGGTTACTTTGACCGGAGATCGGGTCATCATTTCTCCACCGCCTCTTGGAAATATCCGAGCCTGTGCTATCATTTCTAAAACGGATGTTTTCCCAGAGCTCTGATCACCAACAACAACAACTCTTGGTAACTGGTCCTGGGCATTATATGCCGAATCCAAATCTGACAGTTCATCCAAAACTTCTGAATACATGTCGATCAAAGATTTGTTAATACGGCCCTTTTGTAAAGATTTCTGCGACTTCAAAAGCAGCTCACTGCGCAACTCCCTATTTTCCTGAAGCAGTGCTTCAATCCGTTTATGAAACGCTAACTCGTTCTTGAGAAGAGCTTCTTGCAATTCTTCGACACTAATTTGCTTGGGTTTTTGTTTAACAGGCTTTTGTAGATCATCATTAGTATCAGAAACGAACGCTGAAGAGGGACCTTTCACATCTTCGTGTTCATTTGGTATGGGGGGCTTCTTTTCANAACCCGAAAAGAAACCAGAACCAGATTTTCCAGATCACCGACAGATGCAGCATATTCCTTT]
[+] EMBL CD169467 [TCAGAAAGGGTTACTTTGACCGGAGATCGGGTCATCATTTCTCCACCGCCTCTTGGAAATATCCGAGCCTGTGCTATCATTTCTAAAACGGATGTTTTCCCAGAGCTCTGATCACCAACAACAACAACTCTTGGTAACTGGTCCTGGGCATTATATGCCGAATCCAAATCTGACAGTTCATCCAAAACTTCTGAATACATGTCGATCAAAGATTTGTTAATACGGCCCTTTTGTAAAGATTTCTGCGACTTCAAAAGCAGCTCACTGCGCAACTCCCTATTTTCCTGAAGCAGTGCTTCAATCCGTTTATGAAACGCTAACTCGTTCTTGAGAAGAGCTTCTTGCAATTCTTCGACACTAATTTGCTTGGGTTTTTGTTTAACAGGCTTTTGTAGATCATCATTAGTATCAGAAACGAACGCTGAAGAGGGACCTTTCACATCTTCGTGTTCATTTGGTATGGGGGGCTTCTTTTCANAACCCGAAAAGAAACCAGAAC ]
[-] EMBL CD128288 [ TCTGCGACTTCAAAAGCAGCTCACTGCGCAACTCCCTATTTTCCTGAAGCAGTGCTTCAATCCGTTTATGAAACGCTAACTCGTTCTTGAGAAGAGCTTCTTGCAATTCTTCGACACTAATTTGCTTGGGTTTTTGTTTAACAGGCTTTTGTAGATCATCATTAGTATCAGAAACGAACGCTGAAGAGGGACCTTTCACATCTTCGTGTTCATTTGGTATGGGGGGCTTCTTTTCAAAACCCGAAAAGAAACCAGAACCAGATTTTCCAGATCACCGACAGATGCAGCATATTCCTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5683#0 TTCAGCCAAATCCACTTTGGTCAAAACAAAGATAGTTCGTTTACCTGAAGGATCTACAGA 60
consensus_5683#1 -------------------------TCAGAAAGGGTTACTTTGACCGGAG-ATCGGGTCA 34
** * * *** *** * * ** *** *
consensus_5683#0 AGATACTAGATCTGTTACATTGCTACGCTCAACATCGATACTCCCATCTTGAACACATAA 120
consensus_5683#1 TCATTTCTCCACCGCCTCTTGGAAATATCCGA-GCCTGTGCTATCATTTC-------TAA 86
** * * * * * * * * * * ** *** * ***
consensus_5683#0 AATAATCGCATTCGGATTGCTCATATATTGTCGAGCAACATCCTGTATAGTTTCACGTGT 180
consensus_5683#1 AACGGATGTTTTCCCAGAGCTC---TGATCACCAACAACA------ACAACTCTTGGTA- 136
** * *** * **** * * * * ***** * * * **
consensus_5683#0 ACCAGACTGCATACCCGTTGTTACA-GTAGAAATGATGCCAGGTAGATCAACAAGAACCA 239
consensus_5683#1 -----ACTG-GTCCTGGGCATTATATGCCGAATCCAAATCTGACAGTTCATCCAAAAC-- 188
**** * * * *** * * *** * * * ** *** * * ***
consensus_5683#0 TCCTCTGAAGCCCAGGCCCTTTCACATTAAGGGAAATGACGTCAATACTGACTGTTTTAC 299
consensus_5683#1 --TTCTGAATACATGTCGATCAAAGATTTGTTAATACGGCCCTTTTGTAAAGATTTCTGC 246
****** * * * * * *** * * * * * * ** * *
consensus_5683#0 CACCACTAACAAGTGCCTTCATACGCATCTCTATCTCTTTCCTCAACGATGCAAGTTCCG 359
consensus_5683#1 GACT--TCAAAAGCAGCTCACTGCGCAACTCCCTATTTTCCTGAAGCAGTGC----TTCA 300
** * * *** ** * **** *** * * ** * * * *** * *
consensus_5683#0 ATTCTTTTGTCAGATCATATTCACGTGAACCATCTTTGAATGAAGCAACATGGTATGGGC 419
consensus_5683#1 ATCCGTTTATGAAACGCTA--------ACTCGTTCTTGAGAAGAGCTTCTTGCAAT---T 349
** * *** * * * ** * * * **** *** * ** **
consensus_5683#0 CCTCAGAAAGGGTTACTTTGACCGGAGATCGGGTCATCATTTCTCCACCGCCTCTTGGAA 479
consensus_5683#1 CTTCGACA----CTAATTTGCTTGGGTTTTTGTTTAACAGGCTTTTGTAGATCATCATTA 405
* ** * ** **** ** * * * * ** * * * *
consensus_5683#0 ATATCCGAGCCTGTGCTATCATTTCTAAAACGGATGTTTTCCCAGAGCTCTGATCACCAA 539
consensus_5683#1 GTATCAGAA--------ACGAACGCTGAAGAGGGACCTTTCACATCTTCGTGTTCATTTG 457
**** ** * * ** ** ** **** ** ** ***
consensus_5683#0 CAACAACAACTCTTGGTAATTGGTCCTGGGCATTATATGCCGAATCCAAATCTGACAGTT 599
consensus_5683#1 GTATGGGGGGCTTCTTTTCANAACCCGAAA----AGAAACCAGAACCAGATTTTCCAGAT 513
* * * ** * * ** * *** ** * *** *
consensus_5683#0 CATCCAAAACTTCTGAATACATGTCGATCAAAGATNTGTTAATACGGGCCCTTTTGTAAA 659
consensus_5683#1 CACCGACAGATGCAGCATATTCCTTT---------------------------------- 539
** * * * * * * *** *
consensus_5683#0 GATTTCTGCTGTGCGTTTTCTCCAACGAGT 689
consensus_5683#1 ------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||