These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5685#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 413 fasta sequence [TATAATGAGACCTTCTGGAAGACATGCTTCTATTTCACCCCATTCTAACCCACTCACAGCTGCTGCTTCAAGAAGTAGGAGATCTACCTGAGGACCGACAGAATTAATGCATCGATAAGCAGAATCTCTAAACGGGTCACTAGGGTACCAGTGGTGCTGGAATTTGGCTAGAAGATACTTTTCAAGTTCTTCACCGAAACTATCAACTCGACGTCTCGGAAGCTTTGTGTATAAATGTGATAATATATAATTTACTGCGACGGTTATTTCCATAAACATCGGGGAAGTGGAAATATAGAAGTTTTAAATCCAGTTGCTTGTCGACTGTATTCCTTCAGAATAACTTTATTCCGAAATATATCTTATAAAATAGATACATTTCTGATAGTGTTGTTAATTCAAAGTATGAGATT] [+] EMBL CD132663 [TATAATGAGACCTTCTGGAAGACATGCTTCTATTTCACCCCATTCTAACCCACTCACAGCTGCTGCTTCAAGAAGTAGGAGATCTACCTGAGGACCGACAGAATTAATGCATCGATAAGCAGAATCTCTAAACGGGTCACTAGGGTACCAGTGGTGCTGGAATTTGGCTAGAAGATACTTTTCAAGTTCTTCACCGAAACTATCAACTCGACGTCTCGGAAGCTTTGTGTATAAATGTGATAATATATAATTTACTGCGACGGTTATTTCCATAAACATCGGGGAAGTGGAAATATAGAAGTTTTAAATCCAGTTGCTTGTCGACTGTATTCCTTCAGAATAACTTTATTCCGAAATATATCTTATAAAATAGATACATTTCTGATAGTGTTGTTAATTCAAAGTATGAGATT] [-] EMBL CD189383 [ ATAATGAGACCTTCTGGAAGACATGCTTCTATTTCACCCCATTCTAACCCACTCACAGCTGCTGCTTCAAGAAGTAGGAGATCTACCTGAGGACCGACAGAATTAATGCATCGATAAGCAGAATCTCTAAACGGGTCACTAGGGTACCAGTGGTGCTGGAATTTGGCTAGAAGATACTTTTCAAGTTCTTCACCGAAACTATCAACTCGACGTCTCGGAAGCTTTGTGTATAAATGTGATAATATATAATTTACTGCGACGGTTATTTCCATAAACATCGGGGAAATGGAAATATAGAAGTTTTAAATCCAGTTGCTTGTCGACTGTGTTCCTTCAGAATAACTTTATTCCGAAATATATCTTATAAAATAGATACATTTCTGATAGTGT ] consensusID : consensus_5685#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 124 fasta sequence [GTGTTATCTCGCATAAGCATCGGGGAAATGGAAATATAGAAGTTTTAAATCCAGTTGCTTGTCGACTGTATTCCTTCAGAATAACTTTATTCCGAAATATATGATGAGAAATTTTCCACTAAAT] [+] EMBL CD063723 [GTGTTATCTCGCATAAGCATCGGGGAAATGGAAATATAGAAGTTTTAAATCCAGTTGCTTGTCGACTGTATTCCTTCAGAATAACTTTATTCCGAAATATATGATGAGAAATTTTCCACTAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5685#0 TATAATGAGACCTTCTGGAAGACATGCTTCTATTTCACCCCATTCTAACCCACTCACAGC 60 consensus_5685#1 ------------------------------------------------------------ consensus_5685#0 TGCTGCTTCAAGAAGTAGGAGATCTACCTGAGGACCGACAGAATTAATGCATCGATAAGC 120 consensus_5685#1 ------------------------------------------------------------ consensus_5685#0 AGAATCTCTAAACGGGTCACTAGGGTACCAGTGGTGCTGGAATTTGGCTAGAAGATACTT 180 consensus_5685#1 ------------------------------------------------------------ consensus_5685#0 TTCAAGTTCTTCACCGAAACTATCAACTCGACGTCTCGGAAGCTTTGTGTATAAATGTGA 240 consensus_5685#1 ------------------------------------------------------------ consensus_5685#0 TAATATATAATTTACTGCGACGGTTATTTC-CATAAACATCGGGGAAGTGGAAATATAGA 299 consensus_5685#1 --------------------GTGTTATCTCGCATAAGCATCGGGGAAATGGAAATATAGA 40 ***** ** ***** ********** ************ consensus_5685#0 AGTTTTAAATCCAGTTGCTTGTCGACTGTATTCCTTCAGAATAACTTTATTCCGAAATAT 359 consensus_5685#1 AGTTTTAAATCCAGTTGCTTGTCGACTGTATTCCTTCAGAATAACTTTATTCCGAAATAT 100 ************************************************************ consensus_5685#0 ATCTTATAAAATAGATACATTTCTGATAGTGTTGTTAATTCAAAGTATGAGATT 413 consensus_5685#1 ATGATGAGAAAT-------TTTCCACTAAAT----------------------- 124 ** * **** **** ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||