cluster # 5685

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 5685 cluster # 5685 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5685#0 length = 413 sequences # 2

consensus_5685#1 length = 124 sequences # 1

consensusID : consensus_5685#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 413
fasta sequence

                              [TATAATGAGACCTTCTGGAAGACATGCTTCTATTTCACCCCATTCTAACCCACTCACAGCTGCTGCTTCAAGAAGTAGGAGATCTACCTGAGGACCGACAGAATTAATGCATCGATAAGCAGAATCTCTAAACGGGTCACTAGGGTACCAGTGGTGCTGGAATTTGGCTAGAAGATACTTTTCAAGTTCTTCACCGAAACTATCAACTCGACGTCTCGGAAGCTTTGTGTATAAATGTGATAATATATAATTTACTGCGACGGTTATTTCCATAAACATCGGGGAAGTGGAAATATAGAAGTTTTAAATCCAGTTGCTTGTCGACTGTATTCCTTCAGAATAACTTTATTCCGAAATATATCTTATAAAATAGATACATTTCTGATAGTGTTGTTAATTCAAAGTATGAGATT]

[+] EMBL CD132663             [TATAATGAGACCTTCTGGAAGACATGCTTCTATTTCACCCCATTCTAACCCACTCACAGCTGCTGCTTCAAGAAGTAGGAGATCTACCTGAGGACCGACAGAATTAATGCATCGATAAGCAGAATCTCTAAACGGGTCACTAGGGTACCAGTGGTGCTGGAATTTGGCTAGAAGATACTTTTCAAGTTCTTCACCGAAACTATCAACTCGACGTCTCGGAAGCTTTGTGTATAAATGTGATAATATATAATTTACTGCGACGGTTATTTCCATAAACATCGGGGAAGTGGAAATATAGAAGTTTTAAATCCAGTTGCTTGTCGACTGTATTCCTTCAGAATAACTTTATTCCGAAATATATCTTATAAAATAGATACATTTCTGATAGTGTTGTTAATTCAAAGTATGAGATT]
[-] EMBL CD189383             [ ATAATGAGACCTTCTGGAAGACATGCTTCTATTTCACCCCATTCTAACCCACTCACAGCTGCTGCTTCAAGAAGTAGGAGATCTACCTGAGGACCGACAGAATTAATGCATCGATAAGCAGAATCTCTAAACGGGTCACTAGGGTACCAGTGGTGCTGGAATTTGGCTAGAAGATACTTTTCAAGTTCTTCACCGAAACTATCAACTCGACGTCTCGGAAGCTTTGTGTATAAATGTGATAATATATAATTTACTGCGACGGTTATTTCCATAAACATCGGGGAAATGGAAATATAGAAGTTTTAAATCCAGTTGCTTGTCGACTGTGTTCCTTCAGAATAACTTTATTCCGAAATATATCTTATAAAATAGATACATTTCTGATAGTGT                      ]




>consensus_5685#0
TATAATGAGACCTTCTGGAAGACATGCTTCTATTTCACCCCATTCTAACCCACTCACAGC
TGCTGCTTCAAGAAGTAGGAGATCTACCTGAGGACCGACAGAATTAATGCATCGATAAGC
AGAATCTCTAAACGGGTCACTAGGGTACCAGTGGTGCTGGAATTTGGCTAGAAGATACTT
TTCAAGTTCTTCACCGAAACTATCAACTCGACGTCTCGGAAGCTTTGTGTATAAATGTGA
TAATATATAATTTACTGCGACGGTTATTTCCATAAACATCGGGGAAGTGGAAATATAGAA
GTTTTAAATCCAGTTGCTTGTCGACTGTATTCCTTCAGAATAACTTTATTCCGAAATATA
TCTTATAAAATAGATACATTTCTGATAGTGTTGTTAATTCAAAGTATGAGATT

consensusID : consensus_5685#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 124
fasta sequence

                              [GTGTTATCTCGCATAAGCATCGGGGAAATGGAAATATAGAAGTTTTAAATCCAGTTGCTTGTCGACTGTATTCCTTCAGAATAACTTTATTCCGAAATATATGATGAGAAATTTTCCACTAAAT]

[+] EMBL CD063723             [GTGTTATCTCGCATAAGCATCGGGGAAATGGAAATATAGAAGTTTTAAATCCAGTTGCTTGTCGACTGTATTCCTTCAGAATAACTTTATTCCGAAATATATGATGAGAAATTTTCCACTAAAT]




>consensus_5685#1
GTGTTATCTCGCATAAGCATCGGGGAAATGGAAATATAGAAGTTTTAAATCCAGTTGCTT
GTCGACTGTATTCCTTCAGAATAACTTTATTCCGAAATATATGATGAGAAATTTTCCACT
AAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5685#0      TATAATGAGACCTTCTGGAAGACATGCTTCTATTTCACCCCATTCTAACCCACTCACAGC 60
consensus_5685#1      ------------------------------------------------------------
                                                                                  

consensus_5685#0      TGCTGCTTCAAGAAGTAGGAGATCTACCTGAGGACCGACAGAATTAATGCATCGATAAGC 120
consensus_5685#1      ------------------------------------------------------------
                                                                                  

consensus_5685#0      AGAATCTCTAAACGGGTCACTAGGGTACCAGTGGTGCTGGAATTTGGCTAGAAGATACTT 180
consensus_5685#1      ------------------------------------------------------------
                                                                                  

consensus_5685#0      TTCAAGTTCTTCACCGAAACTATCAACTCGACGTCTCGGAAGCTTTGTGTATAAATGTGA 240
consensus_5685#1      ------------------------------------------------------------
                                                                                  

consensus_5685#0      TAATATATAATTTACTGCGACGGTTATTTC-CATAAACATCGGGGAAGTGGAAATATAGA 299
consensus_5685#1      --------------------GTGTTATCTCGCATAAGCATCGGGGAAATGGAAATATAGA 40
                                            ***** ** ***** ********** ************

consensus_5685#0      AGTTTTAAATCCAGTTGCTTGTCGACTGTATTCCTTCAGAATAACTTTATTCCGAAATAT 359
consensus_5685#1      AGTTTTAAATCCAGTTGCTTGTCGACTGTATTCCTTCAGAATAACTTTATTCCGAAATAT 100
                      ************************************************************

consensus_5685#0      ATCTTATAAAATAGATACATTTCTGATAGTGTTGTTAATTCAAAGTATGAGATT 413
consensus_5685#1      ATGATGAGAAAT-------TTTCCACTAAAT----------------------- 124
                      **  *   ****       ****   **