cluster # 5687

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Schistosoma mansoni
cluster # 5687 cluster # 5687 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5687#0 length = 527 sequences # 2

consensus_5687#1 length = 432 sequences # 1

consensusID : consensus_5687#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 527
fasta sequence

                              [CGACAGAAAACTCTGGGACTTAGTTCCATACTATTCAGCACTCATCAGCAAGGTATACTTGTAATCATGAAGGAATTGATGCTCCCAGGCGAACCCGATCTCGTGTTTCATCCCGTTTCACAGAGAGAATGCCACGGTGATATCCAGATATCGACTGATCTCTTGTCTTATATTTCCTGTCACAACTTTATATCTCAACATAGTGCACATGTTGTCAAGTCACCTAGACTAGTGGCCATACTAAAACTTGATCATTAGAATTCAATCTACACTAAGAAGGACCCGACCCAAATGAGATTGGTCACTTCTCAGTGATCCACTAACTGTAAATAGATATTCAAATGACTGACATTTCAATGCCCAATGTAAGTTGTTCTTTACACTAAATAGGCAAGAATATTAACGAAACGGCAAACAAGGGGGTTTTGTGGAGATTTTAGTAATTTTATATAGTTAAGATCATGAGTGACTGGCTCTATGAGGTAATTTCTGGAGTTCTAGTGAGAAATCGTGGCCAGTGGAGCTAA]

[+] EMBL CD088227             [CGACAGAAAACTCTGGGACTTAGTTCCATACTATTCAGCACTCATCAGCAAGGTATACTTGTAATCATGAAGGAATTGATGCTCCCAGGCGAACCCGATCTCGTGTTTCATCCCGTTTCACAGAGAGAATGCCACGGTGATATCCAGATATCGACTGATCTCTTGTCTTATATTTCCTGTCACAACTTTATATCTCAACATAGTGCACATGTTGTCAAGTCACCTAGACTAGTGGCCATACTAAAACTTGATCATTAGAATTCAATCTACACTAAGAAGGACCCGACCCAAATGAGATTGGTCACTTCTCAGTGATCCACTAACTGTAAATAGATATTCAAATGACTGACATTTCAATGCCCAATGTAAGTTGTTCTTTACACTAAATAGGCAAGAATATTAACGAAACGGCAAACAAGGGGGTTTTGTGGAGATTTTAGTAATTTTATATAGTTAAGATCATGAGTGACTGGCTCTATGAGGTAATTTCTGGAGTTCTAGTGAGAAATCGTGGCCAGTGGAGCTAA]
[+] EMBL CD088301             [CGACAGAAAACTCTGGGACTTAGTTCCATACTATTCAGCACTCATCAGCAAGGTATACTTGTAATCATGAAGGAATTGATGCTCCCAGGCGAACCCGATCTCGTGTTTCATCCCGTTTCACAGAGAGAATGCCACGGTGATATCCAGATATCGACTGATCTCTTGTCTTATATTTCCTGTCACAACTTTATATCTCAACATAGAGCACATGTTGTCAAGTCACCTAGACTAGTGGCCATATTAAAACTTGATCATTAGAATTCAATCTACACTAAGAAGGACCAGACCCAAATGAGATTGGTCACTTCTCAGTGATCCACTAACTGTAAATAGATATTCAAATGACTGACATTTCAATGCCCAATGTAAGTTGTTCTTTACACTTAATAGGCAAGAATATTAACGAAATGGCAAACAAGGGGGTTTTGTGGAGATTTTAGTAATTTTATATAGTTAAGATCATGAGTGACTGGCTCTATGAGGTAATTTCTGGAGTTCTAGTGAGAAATCGTGGCCAGTGG      ]




>consensus_5687#0
CGACAGAAAACTCTGGGACTTAGTTCCATACTATTCAGCACTCATCAGCAAGGTATACTT
GTAATCATGAAGGAATTGATGCTCCCAGGCGAACCCGATCTCGTGTTTCATCCCGTTTCA
CAGAGAGAATGCCACGGTGATATCCAGATATCGACTGATCTCTTGTCTTATATTTCCTGT
CACAACTTTATATCTCAACATAGTGCACATGTTGTCAAGTCACCTAGACTAGTGGCCATA
CTAAAACTTGATCATTAGAATTCAATCTACACTAAGAAGGACCCGACCCAAATGAGATTG
GTCACTTCTCAGTGATCCACTAACTGTAAATAGATATTCAAATGACTGACATTTCAATGC
CCAATGTAAGTTGTTCTTTACACTAAATAGGCAAGAATATTAACGAAACGGCAAACAAGG
GGGTTTTGTGGAGATTTTAGTAATTTTATATAGTTAAGATCATGAGTGACTGGCTCTATG
AGGTAATTTCTGGAGTTCTAGTGAGAAATCGTGGCCAGTGGAGCTAA

consensusID : consensus_5687#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence

                              [TCTTAACTATATAAAATTACTAAAATCTCCACAAAACCCCCTTGTGATACATTTAATGTGTTCAAATCACATATCATTAACATACAAAAAATGAACCTTATATCTATATCTCTATTTATAATTATCACATTGTTCAAACCAACTAAGAGATACATGAATAAACTCATATATGTGTCTCAGATTGAATCACCTTTGACCTGATTGACATGACTTAAGTGTAGTCATATTTTATTAAATGTTGTAATCAACTCCTCTGTACCATTTACATTTGTGCTTAATTGATTCGGTGACTTATTTTAAGAAGAATACGCGAATTACATGTAGTCACGAGGTGTCAGCAATTGAACATTATTCAGATGATACAATGATGTAATCAAACTTCAGAAACAATTGAAATAATGAATGATGTAATAAATAAAGGAATGGGTGTAA]

[+] EMBL CD090450             [TCTTAACTATATAAAATTACTAAAATCTCCACAAAACCCCCTTGTGATACATTTAATGTGTTCAAATCACATATCATTAACATACAAAAAATGAACCTTATATCTATATCTCTATTTATAATTATCACATTGTTCAAACCAACTAAGAGATACATGAATAAACTCATATATGTGTCTCAGATTGAATCACCTTTGACCTGATTGACATGACTTAAGTGTAGTCATATTTTATTAAATGTTGTAATCAACTCCTCTGTACCATTTACATTTGTGCTTAATTGATTCGGTGACTTATTTTAAGAAGAATACGCGAATTACATGTAGTCACGAGGTGTCAGCAATTGAACATTATTCAGATGATACAATGATGTAATCAAACTTCAGAAACAATTGAAATAATGAATGATGTAATAAATAAAGGAATGGGTGTAA]




>consensus_5687#1
TCTTAACTATATAAAATTACTAAAATCTCCACAAAACCCCCTTGTGATACATTTAATGTG
TTCAAATCACATATCATTAACATACAAAAAATGAACCTTATATCTATATCTCTATTTATA
ATTATCACATTGTTCAAACCAACTAAGAGATACATGAATAAACTCATATATGTGTCTCAG
ATTGAATCACCTTTGACCTGATTGACATGACTTAAGTGTAGTCATATTTTATTAAATGTT
GTAATCAACTCCTCTGTACCATTTACATTTGTGCTTAATTGATTCGGTGACTTATTTTAA
GAAGAATACGCGAATTACATGTAGTCACGAGGTGTCAGCAATTGAACATTATTCAGATGA
TACAATGATGTAATCAAACTTCAGAAACAATTGAAATAATGAATGATGTAATAAATAAAG
GAATGGGTGTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5687#0      CGACAGAAAACTCTGGGACTTAGTTCCATACTATTCAGCACTCATCAGCAAGGTATACTT 60
consensus_5687#1      --------------------------------------------------------TCTT 4
                                                                               ***

consensus_5687#0      GTAATCATGAAGGAATTGATGCTCCCAGGCGAACCCGATCTCGTGTTTCATCCCGTTT-C 119
consensus_5687#1      AACTATATAAAATTACTAAAATCTCCACAAAACCCC---CTTGTGATACATTTAATGTGT 61
                            ** **   * * *     ***    * ***   ** *** * ***    * *  

consensus_5687#0      ACAGAGAGAATGCCACGGTGATATCCAGATATCGACTGATCTCTTGTCTTATATTTCCTG 179
consensus_5687#1      TCAAATCACATATCAT--TAACATACAAAAAATGA---ACCTTATATCT-ATATCTCTAT 115
                       ** *    **  **   * * ** ** * *  **   * **  * *** **** **   

consensus_5687#0      TCACAACTTTATATCTCAACATAGTGCACATGTTGTCAAGTCACCTAGACTAGTGGCCAT 239
consensus_5687#1      TTATAATT----ATC---ACATTGTTCAAAC-CAACTAAG------AGATACATGAATAA 161
                      * * ** *    ***   **** ** ** *       ***      ***    **   * 

consensus_5687#0      ACTAAAACTTGATCATTAGAATTCAATCTACACTAA---GAAGGACCCGACCCAAATGAG 296
consensus_5687#1      ACTCATATATGTGTCTCAGA-TTGAATCACCTTTGACCTGATTGACATGACTTAAGTG-- 218
                      *** * *  **    * *** ** ****  *  * *   **  ***  ***  ** **  

consensus_5687#0      ATTGGTCACTTCTCAGTGATCCACTAACTGTAAATAGATATTCAA-ATGACTGACATTTC 355
consensus_5687#1      --TAGTCATATTTTATTAAAT-----GTTGTAATCAACTCCTCTGTACCATTTACATTT- 270
                        * ****  * * * * *         *****  *  *  **   *  * * ****** 

consensus_5687#0      AATGCCCAATGTAAGTTGTTCTTTACACTAAATAGGCAAGAATATTAACGAAACGGCAAA 415
consensus_5687#1      -GTGCTTAATTGATTCGGTGACTTATTTTAAGAAG---AATACGCGAATTACATG-TAGT 325
                        ***  ***  *    **   ***   ***  **   *  *    **  * * *  *  

consensus_5687#0      CAAGGGGGTTTTGTGGAGATTTTAGTAATTTTATATAGTTAAGATCATGA-GTGACTGGC 474
consensus_5687#1      CACGAGG----TGTCAGCAATTGAACA---TTATTCAGATGATACAATGATGTAATCAAA 378
                      ** * **    ***    * ** *  *   ****  ** * * *  **** ** *     

consensus_5687#0      TCTATGAGGTAATTTCTGGAGT---TCTAGTGAGAAATCGTGGCCAGTGGAGCTAA 527
consensus_5687#1      CTTCAGAAACAATTGAAATAATGAATGATGTAATAAATAAAGG--AATGGGTGTAA 432
                        *  **   ****     * *   *   ** * ****   **  * ***   ***