cluster # 569

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Schistosoma mansoni
cluster # 569 cluster # 569 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_569#0 length = 436 sequences # 1

consensus_569#1 length = 315 sequences # 1

consensusID : consensus_569#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 436
fasta sequence

                              [GAGTAAGGCTGTTAGCGGTGTGGCTGTTGGTGGTAAGAAGGTGGTAGGGAAGCCTACGTCGTCGAGTTCCGACTCGGATTCGAGTGGTGAGGGTAATGCTGTATCAGCGAAGAAGCCAGTTGGTGTAGTTGGTAGTGGTGTTAAGACGGGCATGGGATGCTCGTCCCACCATAGTGATGCTCAGGCTGCTCAGAGGACGAACACTGCGGACGGTTCGTCGAGCTCTGACTCGCATTTCTAGTGATTTACTATCAGGCTGGCGAATAATACGTCCGTGCGTAGCTTAAGGCGTCTCCATCTCTATTTAAGGCTGTTAGCGGTGTGGCTGTTGGTGGTAAGAAGGTGGTAGGGAAGCCTGCGTCGTCGAGTTCCGACTCGGATTCGAGTGATGAGGGTAATGCTGTATCAGCGAAGAAGCCAGTTGGTGTAGTTGGTA]

[+] EMBL CD098292             [GAGTAAGGCTGTTAGCGGTGTGGCTGTTGGTGGTAAGAAGGTGGTAGGGAAGCCTACGTCGTCGAGTTCCGACTCGGATTCGAGTGGTGAGGGTAATGCTGTATCAGCGAAGAAGCCAGTTGGTGTAGTTGGTAGTGGTGTTAAGACGGGCATGGGATGCTCGTCCCACCATAGTGATGCTCAGGCTGCTCAGAGGACGAACACTGCGGACGGTTCGTCGAGCTCTGACTCGCATTTCTAGTGATTTACTATCAGGCTGGCGAATAATACGTCCGTGCGTAGCTTAAGGCGTCTCCATCTCTATTTAAGGCTGTTAGCGGTGTGGCTGTTGGTGGTAAGAAGGTGGTAGGGAAGCCTGCGTCGTCGAGTTCCGACTCGGATTCGAGTGATGAGGGTAATGCTGTATCAGCGAAGAAGCCAGTTGGTGTAGTTGGTA]




>consensus_569#0
GAGTAAGGCTGTTAGCGGTGTGGCTGTTGGTGGTAAGAAGGTGGTAGGGAAGCCTACGTC
GTCGAGTTCCGACTCGGATTCGAGTGGTGAGGGTAATGCTGTATCAGCGAAGAAGCCAGT
TGGTGTAGTTGGTAGTGGTGTTAAGACGGGCATGGGATGCTCGTCCCACCATAGTGATGC
TCAGGCTGCTCAGAGGACGAACACTGCGGACGGTTCGTCGAGCTCTGACTCGCATTTCTA
GTGATTTACTATCAGGCTGGCGAATAATACGTCCGTGCGTAGCTTAAGGCGTCTCCATCT
CTATTTAAGGCTGTTAGCGGTGTGGCTGTTGGTGGTAAGAAGGTGGTAGGGAAGCCTGCG
TCGTCGAGTTCCGACTCGGATTCGAGTGATGAGGGTAATGCTGTATCAGCGAAGAAGCCA
GTTGGTGTAGTTGGTA

consensusID : consensus_569#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 315
fasta sequence

                              [GCTTTTTCTGCATCAGCAGCAGCCTTCTCAGCCTCCCGCTTTGCTTTTTCCTTGTCAAACTGTTCGTTAATGTCGAAAAGGGCTTTGTCCATTTGATCTCTTGCTGAACGCAATAAGTGGTTGTATGTGTTTGCCTGACTTTTGTACTCATGAAGTTGCTTTTGTTCGGACTCAGATTCTAGTGATGACGAGCAGCCGGCGAGTAAGAAGCCTGCGTTGGTGAAAGCGTCTCCATCTGTGAGCAAGGCTGTTAGCGGTGTGGCTGTTGGTGGTAAGAAGGTGGTAGGGAAGCCTGCGTCGTCGAGTTCCGACTCG]

[-] EMBL CD202760             [GCTTTTTCTGCATCAGCAGCAGCCTTCTCAGCCTCCCGCTTTGCTTTTTCCTTGTCAAACTGTTCGTTAATGTCGAAAAGGGCTTTGTCCATTTGATCTCTTGCTGAACGCAATAAGTGGTTGTATGTGTTTGCCTGACTTTTGTACTCATGAAGTTGCTTTTGTTCGGACTCAGATTCTAGTGATGACGAGCAGCCGGCGAGTAAGAAGCCTGCGTTGGTGAAAGCGTCTCCATCTGTGAGCAAGGCTGTTAGCGGTGTGGCTGTTGGTGGTAAGAAGGTGGTAGGGAAGCCTGCGTCGTCGAGTTCCGACTCG]




>consensus_569#1
GCTTTTTCTGCATCAGCAGCAGCCTTCTCAGCCTCCCGCTTTGCTTTTTCCTTGTCAAAC
TGTTCGTTAATGTCGAAAAGGGCTTTGTCCATTTGATCTCTTGCTGAACGCAATAAGTGG
TTGTATGTGTTTGCCTGACTTTTGTACTCATGAAGTTGCTTTTGTTCGGACTCAGATTCT
AGTGATGACGAGCAGCCGGCGAGTAAGAAGCCTGCGTTGGTGAAAGCGTCTCCATCTGTG
AGCAAGGCTGTTAGCGGTGTGGCTGTTGGTGGTAAGAAGGTGGTAGGGAAGCCTGCGTCG
TCGAGTTCCGACTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_569#0      GAGTAAGGCTGTTAGCGGTGTGGCTGTTGGTGGTAAGAAGGTGGTAGGGAAGCCTACGTC 60
consensus_569#1      ----------------------------------------------GCTTTTTCTGCATC 14
                                                                   *      ** * **

consensus_569#0      GTCGAGTTCCGACTCGGATTCGAGTGGTGAGGGTAATGCTGTATCAGCGAAGAAGCCAGT 120
consensus_569#1      AGCAGCAGCCTTCTCAGCCTCCCGCTTTG-------CTTTTTCCTTGTCAAACTGTTCGT 67
                       *     **  *** *  **  *   **          * *    *  **   *   **

consensus_569#0      TGGTGTAGTTGGTAGTGGTGTTAAGACGGGCATGGGATGCTCGTCCCACCATAGTGATGC 180
consensus_569#1      TAATGTCGAAAAGGGCTTTGTCCATTTGATCTC---TTGCTGAACGCAATAAGTGGTTGT 124
                     *  *** *      *   ***  *   *  *      ****   * **  *    * ** 

consensus_569#0      TCAGGCTGCTCAGAGGACGAACACTGCGGACGGTTCGTCGAGCTCTGACTCGCATTTCTA 240
consensus_569#1      ATGTGTTTGCCTGACTTTTGTACTCATGAA--GTTGCTTTTGTTCGGACTCAGATT-CTA 181
                         * *   * **             * *  ***  *   * ** *****  *** ***

consensus_569#0      GTGATTTACTATCAGGCTGGCGAATAATACGTCCGTGCGTAGCTTAAGGCGTCTCCATCT 300
consensus_569#1      GTGATG-ACGAGCAG-CCGGCGAGTAAGAAGCC--TGCGTTGGTGAAAGCGTCTCCATCT 237
                     *****  ** * *** * ***** *** * * *  ***** * * ** ************

consensus_569#0      CTATTTAAGGCTGTTAGCGGTGTGGCTGTTGGTGGTAAGAAGGTGGTAGGGAAGCCTGCG 360
consensus_569#1      GTGAGCAAGGCTGTTAGCGGTGTGGCTGTTGGTGGTAAGAAGGTGGTAGGGAAGCCTGCG 297
                      *    ******************************************************

consensus_569#0      TCGTCGAGTTCCGACTCGGATTCGAGTGATGAGGGTAATGCTGTATCAGCGAAGAAGCCA 420
consensus_569#1      TCGTCGAGTTCCGACTCG------------------------------------------ 315
                     ******************                                          

consensus_569#0      GTTGGTGTAGTTGGTA 436
consensus_569#1      ----------------