These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5696#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 603 fasta sequence [TATTTTTTTTTAAAAAAACGTATCTCAAGATAGAAAACATCATATCAATTTTAAATTAGTTTTGTTTGCATAGAAGGCAGACAGATGGTATAAATTTCAACAATTCTAACTGTTGACGTTCGGACGCAGTATTTATAGAACAAAAAGGAAAGAACATATCTTAAGAAAAGTAATGTGTCATATTTAGAGTGATGTATTTGACTGCTGATGAAGGCTGAAATATATACCATAATTAAACAAGCAATAACAAATAGGTTTTTAGTTTTAACATCGATTTACAAATGGAGCAAAAGGCAAAAAAATTTCTAAAAATCCAATCAGAATCGTGAAAAAAAACCAACAAAGTTAGAAAAAGTTTATTTTCATTTTTCTTTAAAAAAAACCCGGAGGTTTGAAAACACCAAGGTTCGAAGTTTTAGTGACGCACCTTAGTGTAAAGGAATGAAAATTCTTCCGATACATAAAGCAATCATGATTATCAGGATAATAATACTTGTAGTGTCAGTTAATTGGAACAACTACCATACACACCAACGNATATATATATATATATATATATATATATATATTCGGGGGGGTAAACTCAGATCGGCTTTGGAAATT] [+] EMBL CD076941 [TATTTTTTTTTAAAAAAACGTATCTCAAGATAGAAAACATCATATCAATTTTAAATTAGTTTTGTTTGCATAGAAGGCAGACAGATGGTATAAATTTCAACAATTCTAACTGTTGACGTTCGGACGCAGTATTTATAGAACAAAAAGGAAAGAACATATCTTAAGAAAAGTAATGTGTCATATTTAGAGTGATGTATTTGACTGCTGATGAAGGCTGAAATATATACCATAATTAAACAAGCAATAACAAATAGGTTTTTAGTTTTAACATCGATTTACAAATGGAGCAAAAGGCAAAAAAATTTCTAAAAATCCAATCAGAATCGTGAAAAAAAACCAACAAAGTTAGAAAAAGTTTATTTTCATTTTTCTTTAAAAAAAACCCGGAGGTTTGAAAACACCAAGGTTCGAAGTTTTAGTGACGCACCTTAGTGTAAAGGAATGAAAATTCTTCCGATACATAAAGCAATCATGATTATCAGGATAATAATACTTGTAGTGTCAGTTAATTGGAACAACTACCATACACACCAACGNATATATATATATATATATATATATATATATATTCGGGGGGGTAAACTCAGATCGGCTTTGGAAATT] [-] EMBL AI014204 [ aaTTTTTTTTAAAAAAACGTATCTCAAGATAGAAAACATCATATCAATTTTAAATTAG TTTGTTTGCATAGAAGGCAGACAGATGGTATAAATTTCAACAATTCTAACTGTTGACGTTCGGACGCAGTATTTAT ] consensusID : consensus_5696#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 389 fasta sequence [AGCGATGTATTTGACTGCTGATGAAGGCTGAAATATATACCATAATTAAACAAGCAATAACAAATAGGTTTTTAGTTTTAACATCGATTTACAAATGGAGCAAAAGGCAAAAAAATTTCTAAAAATCCAATCAGAATCGTGAAAAAAAACCAACAAAGTTAGAAAAAGTTTATTTTCATTTTTCTTTAAAAAAAACCCGGAGGTTTGAAAACACCAAGGTTTGAAGTTTTAATGACGCACCTTAGTGTAAAGGAATGAAAATTCTTTCGATACATAAAGCAATCATGATTATTAAGATAATAATACTTGTAGTGTCAATTAATTGGAACAACTACCATACACACCAACGTATATATATATATATATTCGGGGGGTAAACTCAAATCGGC] [+] EMBL AI976771 [AGCGATGTATTTGACTGCTGATGAAGGCTGAAATATATACCATAATTAAACAAGCAATAACAAATAGGTTTTTAGTTTTAACATCGATTTACAAATGGAGCAAAAGGCAAAAAAATTTCTAAAAATCCAATCAGAATCGTGAAAAAAAACCAACAAAGTTAGAAAAAGTTTATTTTCATTTTTCTTTAAAAAAAACCCGGAGGTTTGAAAACACCAAGGTTTGAAGTTTTAATGACGCACCTTAGTGTAAAGGAATGAAAATTCTTTCGATACATAAAGCAATCATGATTATTAAGATAATAATACTTGTAGTGTCAATTAATTGGAACAACTACCATACACACCAACGTATATATATATATATATTCGGGGGGTAAACTCAAATCGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5696#0 TATTTTTTTTTAAAAAAACGTATCTCAAGATAGAAAACATCATATCAATTTTAAATTAGT 60 consensus_5696#1 ------------------------------------------------------------ consensus_5696#0 TTTGTTTGCATAGAAGGCAGACAGATGGTATAAATTTCAACAATTCTAACTGTTGACGTT 120 consensus_5696#1 ------------------------------------------------------------ consensus_5696#0 CGGACGCAGTATTTATAGAACAAAAAGGAAAGAACATATCTTAAGAAAAGTAATGTGTCA 180 consensus_5696#1 ------------------------------------------------------------ consensus_5696#0 TATTTAGAGTGATGTATTTGACTGCTGATGAAGGCTGAAATATATACCATAATTAAACAA 240 consensus_5696#1 -------AGCGATGTATTTGACTGCTGATGAAGGCTGAAATATATACCATAATTAAACAA 53 ** ************************************************** consensus_5696#0 GCAATAACAAATAGGTTTTTAGTTTTAACATCGATTTACAAATGGAGCAAAAGGCAAAAA 300 consensus_5696#1 GCAATAACAAATAGGTTTTTAGTTTTAACATCGATTTACAAATGGAGCAAAAGGCAAAAA 113 ************************************************************ consensus_5696#0 AATTTCTAAAAATCCAATCAGAATCGTGAAAAAAAACCAACAAAGTTAGAAAAAGTTTAT 360 consensus_5696#1 AATTTCTAAAAATCCAATCAGAATCGTGAAAAAAAACCAACAAAGTTAGAAAAAGTTTAT 173 ************************************************************ consensus_5696#0 TTTCATTTTTCTTTAAAAAAAACCCGGAGGTTTGAAAACACCAAGGTTCGAAGTTTTAGT 420 consensus_5696#1 TTTCATTTTTCTTTAAAAAAAACCCGGAGGTTTGAAAACACCAAGGTTTGAAGTTTTAAT 233 ************************************************ ********* * consensus_5696#0 GACGCACCTTAGTGTAAAGGAATGAAAATTCTTCCGATACATAAAGCAATCATGATTATC 480 consensus_5696#1 GACGCACCTTAGTGTAAAGGAATGAAAATTCTTTCGATACATAAAGCAATCATGATTATT 293 ********************************* ************************* consensus_5696#0 AGGATAATAATACTTGTAGTGTCAGTTAATTGGAACAACTACCATACACACCAACGNATA 540 consensus_5696#1 AAGATAATAATACTTGTAGTGTCAATTAATTGGAACAACTACCATACACACCAACGTATA 353 * ********************** ******************************* *** consensus_5696#0 TATATATATATATATATATATATATATATTCGGGGGGGTAAACTCAGATCGGCTTTGGAA 600 consensus_5696#1 TATATATATATATTC-----------------GGGGGGTAAACTCAAATCGGC------- 389 ************* ************** ****** consensus_5696#0 ATT 603 consensus_5696#1 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||