cluster # 5696

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Schistosoma mansoni
cluster # 5696 cluster # 5696 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5696#0 length = 603 sequences # 2

consensus_5696#1 length = 389 sequences # 1

consensusID : consensus_5696#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 603
fasta sequence

                              [TATTTTTTTTTAAAAAAACGTATCTCAAGATAGAAAACATCATATCAATTTTAAATTAGTTTTGTTTGCATAGAAGGCAGACAGATGGTATAAATTTCAACAATTCTAACTGTTGACGTTCGGACGCAGTATTTATAGAACAAAAAGGAAAGAACATATCTTAAGAAAAGTAATGTGTCATATTTAGAGTGATGTATTTGACTGCTGATGAAGGCTGAAATATATACCATAATTAAACAAGCAATAACAAATAGGTTTTTAGTTTTAACATCGATTTACAAATGGAGCAAAAGGCAAAAAAATTTCTAAAAATCCAATCAGAATCGTGAAAAAAAACCAACAAAGTTAGAAAAAGTTTATTTTCATTTTTCTTTAAAAAAAACCCGGAGGTTTGAAAACACCAAGGTTCGAAGTTTTAGTGACGCACCTTAGTGTAAAGGAATGAAAATTCTTCCGATACATAAAGCAATCATGATTATCAGGATAATAATACTTGTAGTGTCAGTTAATTGGAACAACTACCATACACACCAACGNATATATATATATATATATATATATATATATATTCGGGGGGGTAAACTCAGATCGGCTTTGGAAATT]

[+] EMBL CD076941             [TATTTTTTTTTAAAAAAACGTATCTCAAGATAGAAAACATCATATCAATTTTAAATTAGTTTTGTTTGCATAGAAGGCAGACAGATGGTATAAATTTCAACAATTCTAACTGTTGACGTTCGGACGCAGTATTTATAGAACAAAAAGGAAAGAACATATCTTAAGAAAAGTAATGTGTCATATTTAGAGTGATGTATTTGACTGCTGATGAAGGCTGAAATATATACCATAATTAAACAAGCAATAACAAATAGGTTTTTAGTTTTAACATCGATTTACAAATGGAGCAAAAGGCAAAAAAATTTCTAAAAATCCAATCAGAATCGTGAAAAAAAACCAACAAAGTTAGAAAAAGTTTATTTTCATTTTTCTTTAAAAAAAACCCGGAGGTTTGAAAACACCAAGGTTCGAAGTTTTAGTGACGCACCTTAGTGTAAAGGAATGAAAATTCTTCCGATACATAAAGCAATCATGATTATCAGGATAATAATACTTGTAGTGTCAGTTAATTGGAACAACTACCATACACACCAACGNATATATATATATATATATATATATATATATATTCGGGGGGGTAAACTCAGATCGGCTTTGGAAATT]
[-] EMBL AI014204             [ aaTTTTTTTTAAAAAAACGTATCTCAAGATAGAAAACATCATATCAATTTTAAATTAG TTTGTTTGCATAGAAGGCAGACAGATGGTATAAATTTCAACAATTCTAACTGTTGACGTTCGGACGCAGTATTTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]




>consensus_5696#0
TATTTTTTTTTAAAAAAACGTATCTCAAGATAGAAAACATCATATCAATTTTAAATTAGT
TTTGTTTGCATAGAAGGCAGACAGATGGTATAAATTTCAACAATTCTAACTGTTGACGTT
CGGACGCAGTATTTATAGAACAAAAAGGAAAGAACATATCTTAAGAAAAGTAATGTGTCA
TATTTAGAGTGATGTATTTGACTGCTGATGAAGGCTGAAATATATACCATAATTAAACAA
GCAATAACAAATAGGTTTTTAGTTTTAACATCGATTTACAAATGGAGCAAAAGGCAAAAA
AATTTCTAAAAATCCAATCAGAATCGTGAAAAAAAACCAACAAAGTTAGAAAAAGTTTAT
TTTCATTTTTCTTTAAAAAAAACCCGGAGGTTTGAAAACACCAAGGTTCGAAGTTTTAGT
GACGCACCTTAGTGTAAAGGAATGAAAATTCTTCCGATACATAAAGCAATCATGATTATC
AGGATAATAATACTTGTAGTGTCAGTTAATTGGAACAACTACCATACACACCAACGNATA
TATATATATATATATATATATATATATATTCGGGGGGGTAAACTCAGATCGGCTTTGGAA
ATT

consensusID : consensus_5696#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 389
fasta sequence

                              [AGCGATGTATTTGACTGCTGATGAAGGCTGAAATATATACCATAATTAAACAAGCAATAACAAATAGGTTTTTAGTTTTAACATCGATTTACAAATGGAGCAAAAGGCAAAAAAATTTCTAAAAATCCAATCAGAATCGTGAAAAAAAACCAACAAAGTTAGAAAAAGTTTATTTTCATTTTTCTTTAAAAAAAACCCGGAGGTTTGAAAACACCAAGGTTTGAAGTTTTAATGACGCACCTTAGTGTAAAGGAATGAAAATTCTTTCGATACATAAAGCAATCATGATTATTAAGATAATAATACTTGTAGTGTCAATTAATTGGAACAACTACCATACACACCAACGTATATATATATATATATTCGGGGGGTAAACTCAAATCGGC]

[+] EMBL AI976771             [AGCGATGTATTTGACTGCTGATGAAGGCTGAAATATATACCATAATTAAACAAGCAATAACAAATAGGTTTTTAGTTTTAACATCGATTTACAAATGGAGCAAAAGGCAAAAAAATTTCTAAAAATCCAATCAGAATCGTGAAAAAAAACCAACAAAGTTAGAAAAAGTTTATTTTCATTTTTCTTTAAAAAAAACCCGGAGGTTTGAAAACACCAAGGTTTGAAGTTTTAATGACGCACCTTAGTGTAAAGGAATGAAAATTCTTTCGATACATAAAGCAATCATGATTATTAAGATAATAATACTTGTAGTGTCAATTAATTGGAACAACTACCATACACACCAACGTATATATATATATATATTCGGGGGGTAAACTCAAATCGGC]




>consensus_5696#1
AGCGATGTATTTGACTGCTGATGAAGGCTGAAATATATACCATAATTAAACAAGCAATAA
CAAATAGGTTTTTAGTTTTAACATCGATTTACAAATGGAGCAAAAGGCAAAAAAATTTCT
AAAAATCCAATCAGAATCGTGAAAAAAAACCAACAAAGTTAGAAAAAGTTTATTTTCATT
TTTCTTTAAAAAAAACCCGGAGGTTTGAAAACACCAAGGTTTGAAGTTTTAATGACGCAC
CTTAGTGTAAAGGAATGAAAATTCTTTCGATACATAAAGCAATCATGATTATTAAGATAA
TAATACTTGTAGTGTCAATTAATTGGAACAACTACCATACACACCAACGTATATATATAT
ATATATTCGGGGGGTAAACTCAAATCGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5696#0      TATTTTTTTTTAAAAAAACGTATCTCAAGATAGAAAACATCATATCAATTTTAAATTAGT 60
consensus_5696#1      ------------------------------------------------------------
                                                                                  

consensus_5696#0      TTTGTTTGCATAGAAGGCAGACAGATGGTATAAATTTCAACAATTCTAACTGTTGACGTT 120
consensus_5696#1      ------------------------------------------------------------
                                                                                  

consensus_5696#0      CGGACGCAGTATTTATAGAACAAAAAGGAAAGAACATATCTTAAGAAAAGTAATGTGTCA 180
consensus_5696#1      ------------------------------------------------------------
                                                                                  

consensus_5696#0      TATTTAGAGTGATGTATTTGACTGCTGATGAAGGCTGAAATATATACCATAATTAAACAA 240
consensus_5696#1      -------AGCGATGTATTTGACTGCTGATGAAGGCTGAAATATATACCATAATTAAACAA 53
                             ** **************************************************

consensus_5696#0      GCAATAACAAATAGGTTTTTAGTTTTAACATCGATTTACAAATGGAGCAAAAGGCAAAAA 300
consensus_5696#1      GCAATAACAAATAGGTTTTTAGTTTTAACATCGATTTACAAATGGAGCAAAAGGCAAAAA 113
                      ************************************************************

consensus_5696#0      AATTTCTAAAAATCCAATCAGAATCGTGAAAAAAAACCAACAAAGTTAGAAAAAGTTTAT 360
consensus_5696#1      AATTTCTAAAAATCCAATCAGAATCGTGAAAAAAAACCAACAAAGTTAGAAAAAGTTTAT 173
                      ************************************************************

consensus_5696#0      TTTCATTTTTCTTTAAAAAAAACCCGGAGGTTTGAAAACACCAAGGTTCGAAGTTTTAGT 420
consensus_5696#1      TTTCATTTTTCTTTAAAAAAAACCCGGAGGTTTGAAAACACCAAGGTTTGAAGTTTTAAT 233
                      ************************************************ ********* *

consensus_5696#0      GACGCACCTTAGTGTAAAGGAATGAAAATTCTTCCGATACATAAAGCAATCATGATTATC 480
consensus_5696#1      GACGCACCTTAGTGTAAAGGAATGAAAATTCTTTCGATACATAAAGCAATCATGATTATT 293
                      ********************************* ************************* 

consensus_5696#0      AGGATAATAATACTTGTAGTGTCAGTTAATTGGAACAACTACCATACACACCAACGNATA 540
consensus_5696#1      AAGATAATAATACTTGTAGTGTCAATTAATTGGAACAACTACCATACACACCAACGTATA 353
                      * ********************** ******************************* ***

consensus_5696#0      TATATATATATATATATATATATATATATTCGGGGGGGTAAACTCAGATCGGCTTTGGAA 600
consensus_5696#1      TATATATATATATTC-----------------GGGGGGTAAACTCAAATCGGC------- 389
                      *************                   ************** ******       

consensus_5696#0      ATT 603
consensus_5696#1      ---