cluster # 5700

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Schistosoma mansoni
cluster # 5700 cluster # 5700 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5700#0 length = 390 sequences # 2

consensus_5700#1 length = 278 sequences # 1

consensusID : consensus_5700#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 390
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTGATATCAGAAGTGTATATTTGAAACTTGAATAATAAACTTAATATTGGGCAACAAATAAAATGGTAATACAATTTCTGATGGTATCATTCAGAACTGGAAGGAAATATAAGAATGTATCATTTATACATACAGATATATATGACAAAGCAATAAAATCCGCTCATTAAAATCTATTCAAATCTTCAGCAGTTAATTCAGGAATTTCTATTTCAAAATGTGATTCCAATTCTTTGATCAAATACATTTCATCATTTAGAATAAAATTAACTGCTACACCTTCTTTACCAAAACGACCA-ATCTACCAATACGATGT-AATAA-TTTCCCAATC-AGTTTACCA-TTTTTGTTGTTGGAAAATCCAATTTATATTAA]

[+] EMBL AI395051             [TTTTTTTTTTTTTTTTTTTTGATATCAGAAGTGTATATTTGAAACTTGAATAATAAACTTAATATTGGGCAACAAATAAAATGGTAATACAATTTCTGATGGTATCATTCAGAACTGGAAGGAAATATAAGAATGTATCATTTATACATACAGATATATATGACAAAGCAATAAAATCCGCTCATTAAAATCTATTCAAATCTTCAGCAGTTAATTCAGGAATTTCTATTTCAAAATGTGATTCCAATTCTTTGATCAAATACATTTCATCATTTAGAATAAAATTAACTGCTACACCTTCTTTACCAAAACGACCA ATCTACCAATACGATGT AATAA TTTCCCAATC AGTTTACCA TTTTTGTTGTTGGAAAATCCAATTTATATTAA]
[+] EMBL AI395019             [TTTTTTTTTTTTTTTTTTTTGATATCAGAAGTGTATATTTGAAACTTGAATAATAAACTTAATATTGGGCAACAAATAAAATGGTAATACAATTTCTGATGGTATCATTCAGAACTGGAAGGAAATATAAGAATGTATCATTTATACATACAGATATATATGACAAAGCAATAAAATCCGCTCATTAAAATCTATTCAAATCTTCAGCAGTTAATTCAGGAATTTCTATTTCAAAATGTGATTCCAATTCTTTGATCAAATACATTTCATCATTTAGAATAAAATTAACTGCTACACCTTCTTTACCAAAACGAACAGATCTACCAATACGATGTAAATAAGTTTCACAATCAACTTTACCAGTTTTTGTTGTTGGATATTCCAAT         ]




>consensus_5700#0
TTTTTTTTTTTTTTTTTTTTGATATCAGAAGTGTATATTTGAAACTTGAATAATAAACTT
AATATTGGGCAACAAATAAAATGGTAATACAATTTCTGATGGTATCATTCAGAACTGGAA
GGAAATATAAGAATGTATCATTTATACATACAGATATATATGACAAAGCAATAAAATCCG
CTCATTAAAATCTATTCAAATCTTCAGCAGTTAATTCAGGAATTTCTATTTCAAAATGTG
ATTCCAATTCTTTGATCAAATACATTTCATCATTTAGAATAAAATTAACTGCTACACCTT
CTTTACCAAAACGACCAATCTACCAATACGATGTAATAATTTCCCAATCAGTTTACCATT
TTTGTTGTTGGAAAATCCAATTTATATTAA

consensusID : consensus_5700#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 278
fasta sequence

                              [AAGTGTATATTTGAAACTTGAATAATAAACTTAATATTGGGCAACAAATAAAATGGTAAAACAATTTCTGATGGTATCATTCAAAACTGGAAGGAAATATAAGAATGTATCATTTTAAACATACATGATATAATAATGACAAAAACAATTAAAAATTCGCTCCTTTAAAATTCCAGTTCAAATTCTTCATNCACGTGTAATTTCAAGAAATTTCCCATTTCAAAATGAGGATTCCAATTCCTTGAACAAAAACAAGTGCAACAATTAGAAAAAAATTA]

[+] EMBL AA999587             [AAGTGTATATTTGAAACTTGAATAATAAACTTAATATTGGGCAACAAATAAAATGGTAAAACAATTTCTGATGGTATCATTCAAAACTGGAAGGAAATATAAGAATGTATCATTTTAAACATACATGATATAATAATGACAAAAACAATTAAAAATTCGCTCCTTTAAAATTCCAGTTCAAATTCTTCATNCACGTGTAATTTCAAGAAATTTCCCATTTCAAAATGAGGATTCCAATTCCTTGAACAAAAACAAGTGCAACAATTAGAAAAAAATTA]




>consensus_5700#1
AAGTGTATATTTGAAACTTGAATAATAAACTTAATATTGGGCAACAAATAAAATGGTAAA
ACAATTTCTGATGGTATCATTCAAAACTGGAAGGAAATATAAGAATGTATCATTTTAAAC
ATACATGATATAATAATGACAAAAACAATTAAAAATTCGCTCCTTTAAAATTCCAGTTCA
AATTCTTCATNCACGTGTAATTTCAAGAAATTTCCCATTTCAAAATGAGGATTCCAATTC
CTTGAACAAAAACAAGTGCAACAATTAGAAAAAAATTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5700#0      TTTTTTTTTTTTTTTTTTTTGATATCAGAAGTGTATATTTGAAACTTGAATAATAAACTT 60
consensus_5700#1      ----------------------------AAGTGTATATTTGAAACTTGAATAATAAACTT 32
                                                  ********************************

consensus_5700#0      AATATTGGGCAACAAATAAAATGGTAATACAATTTCTGATGGTATCATTCAGAACTGGAA 120
consensus_5700#1      AATATTGGGCAACAAATAAAATGGTAAAACAATTTCTGATGGTATCATTCAAAACTGGAA 92
                      *************************** *********************** ********

consensus_5700#0      GGAAATATAAGAATGTATCATTT-ATACATACA-GATATAT--ATGACAAAG-CAAT--A 173
consensus_5700#1      GGAAATATAAGAATGTATCATTTTAAACATACATGATATAATAATGACAAAAACAATTAA 152
                      *********************** * ******* ******   ********  ****  *

consensus_5700#0      AAATCCGCTCATTAAAATCT---ATTCAAAT-CTTCA-GCA---GTTAATTCAGGAA--T 223
consensus_5700#1      AAATTCGCTCCTTTAAAATTCCAGTTCAAATTCTTCATNCACGTGTAATTTCAAGAAATT 212
                      **** ***** ** ***  *    ******* *****  **   ** * **** ***  *

consensus_5700#0      TTCTATTTCAAAATGTG-ATTCCAATTCTTTGATCAAATACATTT-CATCATTTAGAATA 281
consensus_5700#1      TCCCATTTCAAAATGAGGATTCCAATTCCTTGAACAAAAACAAGTGCAACAATTAGAAAA 272
                      * * *********** * ********** **** **** ***  * ** ** ****** *

consensus_5700#0      AAATTAACTGCTACACCTTCTTTACCAAAACGACCAATCTACCAATACGATGTAATAATT 341
consensus_5700#1      AAATTA------------------------------------------------------ 278
                      ******                                                      

consensus_5700#0      TCCCAATCAGTTTACCATTTTTGTTGTTGGAAAATCCAATTTATATTAA 390
consensus_5700#1      -------------------------------------------------