These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5702#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence [GCCTCCTCGACTTCACCTGTGGACCATCCTCACAACAATATACAGAACTGATGTTGAACTACTAATCAGTTGATTTTAGTCTAAACTATTTGGTAAGTCTGCTACTGGAAATGCTTATTGCTGACTTCCTAATGATTGTAGTTACGTGATCCAGAAGTAACTAATTTGTATATCTGTAAGCGATTAGTACAACTAATGATGACATTAGTTCAATATGTTCCAAACTATTGGCAGTATTACGTGCTTTCATTCCAGAGAATACACCAATATCAAAAGCATCCCTTTGAGCTACAAATCTTTTGTATAATTTTAAACTATATTTAAATGTAATTCGTTTATTTATAGTTATCAAATTCGTGCAAATTCGAGATCATGAAAGTAATGGTGGATCTGAAGCTGTTGAACGAATAGCTCCTCTTCAGCAACGTTACGTTATTTGTCAAGAAGTTAATCCTCATCCAAAGGTAAGTATACTTTTTTACTTCTGTTGTGTAGTAGTTCATTGAATTTTCAATCTTGGATTCATAAGATCTTAGTTGTAACGTAAAAAATGTCATGGATC] [+] EMBL CD200554 [GCCTCCTCGACTTCACCTGTGGACCATCCTCACAACAATATACAGAACTGATGTTGAACTACTAATCAGTTGATTTTAGTCTAAACTATTTGGTAAGTCTGCTACTGGAAATGCTTATTGCTGACTTCCTAATGATTGTAGTTACGTGATCCAGAAGTAACTAATTTGTATATCTGTAAGCGATTAGTACAACTAATGATGACATTAGTTCAATATGTTCCAAACTATTGGCAGTATTACGTGCTTTCATTCCAGAGAATACACCAATATCAAAAGCATCCCTTTGAGCTACAAATCTTTTGTATAATTTTAAACTATATTTAAATGTAATTCGTTTATTTATAGTTATCAAATTCGTGCAAATTCGAGATCATGAAAGTAATGGTGGATCTGAAGCTGTTGAACGAATAGCTCCTCTTCAGCAACGTTACGTTATTTGTCAAGAAGTTAATCCTCATCCAAAGGTAAGTATACTTTTTTACTTCTGTTGTGTAGTAGTTCATTGAATTTTCAATCTTGGATTCATAAGATCTTAGTTGTAACGTAAAAAATGTCATGGATC] consensusID : consensus_5702#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence [TAAAGAGCAAATGTGAATCTGATGAAGAAATAGCTCATCTACGTTCATCGAAAGTTATCAAATTCGTGCAAATTCGAGATCATGAAAGTAATGGTGAATCTGAAGCTGTTGAACGAATAGCTCCTCTTCAGCAACGTTACGTTATTTGTCCAGAAGGTTATTCTCCTTCCAACAAGTCCACTGCTGGTGAATTTTGGGTTANATTTTAAAAACTTTTAATTTTATCATTTCAGAATAAAGTCTGTATAGTTCTTCCATTTCTCGTTGGTTTTTTTTAATGAATTATTTTTGAATAATTATGATTTTCAACCATGTATTTAAAAAAAGCATGAAAATTTAATTGTATAAGGTTTAATTTACCGTAAAATATATTAATTTTT] [-] EMBL CD074119 [TAAAGAGCAAATGTGAATCTGATGAAGAAATAGCTCATCTACGTTCATCGAAAGTTATCAAATTCGTGCAAATTCGAGATCATGAAAGTAATGGTGAATCTGAAGCTGTTGAACGAATAGCTCCTCTTCAGCAACGTTACGTTATTTGTCCAGAAGGTTATTCTCCTTCCAACAAGTCCACTGCTGGTGAATTTTGGGTTANATTTTAAAAACTTTTAATTTTATCATTTCAGAATAAAGTCTGTATAGTTCTTCCATTTCTCGTTGGTTTTTTTTAATGAATTATTTTTGAATAATTATGATTTTCAACCATGTATTTAAAAAAAGCATGAAAATTTAATTGTATAAGGTTTAATTTACCGTAAAATATATTAATTTTT] consensusID : consensus_5702#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 254 fasta sequence [TTTACGGTAAATTAAACCTTATACAATTAAATTTTCATGCTTTTTTTAAATACATGGTTGAAAATCAAAAATATTCAAAAATAATTCATTAAGAAAAACCAACGAGAAATTGAAGAACTATACAGACTTTATTCTGAAATGATAAAATTTAAAGTTTCTTAAATTTCAGTCTAAATTTACCAGCAGTTGATCTCTTTGGGATGAGGATTAACTTCCTTGACAAAAAAACGTAACGTTGCTGAAAGAGGATGCTA] [+] EMBL AI740390 [TTTACGGTAAATTAAACCTTATACAATTAAATTTTCATGCTTTTTTTAAATACATGGTTGAAAATCAAAAATATTCAAAAATAATTCATTAAGAAAAACCAACGAGAAATTGAAGAACTATACAGACTTTATTCTGAAATGATAAAATTTAAAGTTTCTTAAATTTCAGTCTAAATTTACCAGCAGTTGATCTCTTTGGGATGAGGATTAACTTCCTTGACAAAAAAACGTAACGTTGCTGAAAGAGGATGCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5702#0 GCCTCCTCGACTTCACCTGTGGACCATCCTCACAACAATATACAGAACTGATGTTGAACT 60 consensus_5702#1 ------------------------------------------------------------ consensus_5702#2 ------------------------------------------------------------ consensus_5702#0 ACTAATCAGTTGATTTTAGTCTAAACTATTTGGTAAGTCTGCTACTGGAAATGCTTATTG 120 consensus_5702#1 --TAAAGAGCAAATGTGAATCTGA-TGAAGAAATAGCTCATCTAC-------GTTCATCG 50 consensus_5702#2 ------------------------------------------------------------ consensus_5702#0 CTGACTTCCTAATGATTGTAGTTACGTGATCCAGAAGTAACTAATTTGTATATCTGTAAG 180 consensus_5702#1 AAAGTTATCAAATTCGTGCAAATTCGAGATC---ATGAAAGTAATG-GTGAATCTG-AAG 105 consensus_5702#2 ----------------------------------------------------TTTACGGT 8 * * consensus_5702#0 CGATTAGTACAACTAATGATGACATTAGTTCAATATGTTCCAAACTATTGGCAGTATTAC 240 consensus_5702#1 CTGTTG----AACGAATAGCTCCTCTTCAGCAACGTTACGTTATTTGTCCAGAAGGTTAT 161 consensus_5702#2 AAATTAA---ACCTTATACAATTAAATTTTCATGCTTTTTTTAAATACATGGTTGAAAAT 65 ** * * ** ** * * * * consensus_5702#0 GTGCTTTCATTCCAGAGAATACACCAATATCAAAAGCATCCCTTTGAGCTACAAATCTTT 300 consensus_5702#1 ----TCTCCTTCCAACAAGTCCACTGCTGGTGAATTTTGGGTTANATTTTAAAAACTTTT 217 consensus_5702#2 CAAAAATATTCAAAAATAATTCATTAA----GAAAAACCAACGAGAAATTGAAGAACTAT 121 * * * * * ** ** * * * * * consensus_5702#0 ---TGTATAATTTTAAACTATATTTAAATGTAATTCGTTTATTTATAGTTATCAAATTCG 357 consensus_5702#1 AATTTTATCATTTCAGAATAAAGTCTG-TATAGTTCTTCCATTTCTCGTTGGTTTTTTTT 276 consensus_5702#2 ACAGACTTTATTCTGAAATGATAAAATTTAAAGTTTCTTAAATTTCAGTCTAAATTTACC 181 * *** * * * * ** * * ** ** * consensus_5702#0 TGCAAATTCGAGATCATGAAAGTAATGGTGGATCTGAAGCTGTTGAACGAATAGCTCCTC 417 consensus_5702#1 AATGAATT---ATTTTTGAA--TAATTATGATTTTCAACCATGTATTTAAAAAA------ 325 consensus_5702#2 AGC-AGTTGATCTCTTTGGG-------ATGAGGATTAACTTCCTTGACAAAAAA------ 227 * ** ** ** * ** * ** * consensus_5702#0 TTCAGCAACGTTACGTTATTTGTCAAGAAGTTAATCCTCATCCAAAGGTAAGTATACTTT 477 consensus_5702#1 ---AGCA-TGAAAATTTAATTGTATAAGGTTTAAT--TTACCGTAAAATATATTAATTTT 379 consensus_5702#2 -------ACGTAACGTTGCTGAAAGAGGATGCTA-------------------------- 254 * * ** * * * consensus_5702#0 TTTACTTCTGTTGTGTAGTAGTTCATTGAATTTTCAATCTTGGATTCATAAGATCTTAGT 537 consensus_5702#1 T----------------------------------------------------------- 380 consensus_5702#2 ------------------------------------------------------------ consensus_5702#0 TGTAACGTAAAAAATGTCATGGATC 562 consensus_5702#1 ------------------------- consensus_5702#2 ------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||