cluster # 5710

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Schistosoma mansoni
cluster # 5710 cluster # 5710 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5710#0 length = 752 sequences # 2

consensus_5710#1 length = 167 sequences # 1

consensusID : consensus_5710#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 752
fasta sequence

                              [NAGCCAATTTTCGGCACGAGGCTGAAAATCTTGTGTACTTCGCAGAATCACATACGAAATTAGCGCGAAGTATGTTATCGGCATCACATGATCCTAACAAATGGTATCCATTTGCTGTAACTGGTATCCACTTGACGAAGTTGTCATACAACTTCATGCTGAAAGGCCATCTAAAATGTCAATTCTATAATATGTCCTCATCAGCCAGCATCCAAGACTTCAACGAATTTTACTGTTATACATTTTATTCTTTCCACAAATTCTGGACGAAACACCCTCGTGATATAATGCAATTCAATAAATATTGTGACGATTTCGGAAATAAATTGAAATGTCTTCTATTAGATGTAAACTGTAGATTATGTTTGCCGGAAGATAAAAATAAATGATTCATGTGTCTCCGTCTTTCCGGCATTAGTAAGTAAATCACAAGTTATACGAATAACTTAATGTATTTAATGTGGTGCTAACTATGGTTAGTTGTACCACATTTATTGTAATATTCACAAGTGTGATATCTGCTATTTTCGTTTGAATTTTTAAGTATAATGATACTTTGTAATCCTTTAGTATGTGAAATCCACGAAATGAAATCTGTATTTATTCTGCTCCCATTAACGTCCCTCTTTTTTTCAAAGGCATGAAGAAATCTGCTTGTCCAAAATCTTACAGTTACATCTGTTAAGTATTGTCTTTCTTTCTTCAATAGCTATTATTTTGTTTATTTATGTTTAGATTGATAAAGTACATTT]

[+] EMBL CD083279             [NAGCCAATTTTCGGCACGAGGCTGAAAATCTTGTGTACTTCGCAGAATCACATACGAAATTAGCGCGAAGTATGTTATCGGCATCACATGATCCTAACAAATGGTATCCATTTGCTGTAACTGGTATCCACTTGACGAAGTTGTCATACAACTTCATGCTGAAAGGCCATCTAAAATGTCAATTCTATAATATGTCCTCATCAGCCAGCATCCAAGACTTCAACGAATTTTACTGTTATACATTTTATTCTTTCCACAAATTCTGGACGAAACACCCTCGTGATATAATGCAATTCAATAAATATTGTGACGATTTCGGAAATAAATTGAAATGTCTTCTATTAGATGTAAACTGTAGATTATGTTTGCCGGAAGATAAAAATAAATGATTCATGTGTCTCCGTCTTTCCGGCATTAGTAAGTAAATCACAAGTTATACGAATAACTTAATGTATTTAATGTGGTGCTAACTATGGTTAGTTGTACCACATTTATTGTAATATTCACAAGTGTGATATCTGCTATTTTCGTTTGAATTTTTAAGTATAATGATACTTTGTAATCCTTTAGTATGTGAAATCCACGAAATGAAATCTGTATTTATTCTGCTCCCATTAACGTCCCTCTTTTTTTC                                                                                                                      ]
[-] EMBL CD076850             [                                                                                                                                                                   AGGCCATCTANAATGTCAATTCTATAATATGTCCTCATCAGCCAGCATCCAAGACTTCAACGAATTTTACTGTTATACATTTTATTCTTTCCACAAATTCTGGACGAAACACCCTCGTGATATAATGCAATTCAATAAATATTGTGACGATTTCGGAAATAAATTGAAATGTCTTCTATTAGATGTAAACTGTAGATTATGTTTGCCGGAAGATAAAAATAAATGATTCATGTGTCTCCGTCTTTCCGGCATTAGTAAGTAAATCACAAGTTATACGAATAACTTAATGTATTTAATGTGGTGCTAACTATGGTTAGTTGTACCACATTTATTGTAATATTCACAAGTGTGATATCTGCTAAGTTCGTTTGAATTTTTAAGTATAATGATACTTTGTAATCCTTTAGTATGTGAAATCCACGAAATGAAATCTGTATTTATTCTGCTCCCATTAACGTCCCTCTTTTTTTCAAAGGCATGAAGAAATCTGCTTGTCCAAAATCTTACAGTTACATCTGTTAAGTATTGTCTTTCTTTCTTCAATAGCTATTATTTTGTTTATTTATGTTTAGATTGATAAAGTACATTT]




>consensus_5710#0
NAGCCAATTTTCGGCACGAGGCTGAAAATCTTGTGTACTTCGCAGAATCACATACGAAAT
TAGCGCGAAGTATGTTATCGGCATCACATGATCCTAACAAATGGTATCCATTTGCTGTAA
CTGGTATCCACTTGACGAAGTTGTCATACAACTTCATGCTGAAAGGCCATCTAAAATGTC
AATTCTATAATATGTCCTCATCAGCCAGCATCCAAGACTTCAACGAATTTTACTGTTATA
CATTTTATTCTTTCCACAAATTCTGGACGAAACACCCTCGTGATATAATGCAATTCAATA
AATATTGTGACGATTTCGGAAATAAATTGAAATGTCTTCTATTAGATGTAAACTGTAGAT
TATGTTTGCCGGAAGATAAAAATAAATGATTCATGTGTCTCCGTCTTTCCGGCATTAGTA
AGTAAATCACAAGTTATACGAATAACTTAATGTATTTAATGTGGTGCTAACTATGGTTAG
TTGTACCACATTTATTGTAATATTCACAAGTGTGATATCTGCTATTTTCGTTTGAATTTT
TAAGTATAATGATACTTTGTAATCCTTTAGTATGTGAAATCCACGAAATGAAATCTGTAT
TTATTCTGCTCCCATTAACGTCCCTCTTTTTTTCAAAGGCATGAAGAAATCTGCTTGTCC
AAAATCTTACAGTTACATCTGTTAAGTATTGTCTTTCTTTCTTCAATAGCTATTATTTTG
TTTATTTATGTTTAGATTGATAAAGTACATTT

consensusID : consensus_5710#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 167
fasta sequence

                              [TGAAATTTTTTTTTTATTCGGCTCTTTTTTAACGTCCCTCTTTTTTTCAAAGGTTTGAAGTTTTTTTACTTGTCCAAAATTTTACAGTTACATCTGTTTTGTATTGTCTTTCTTTCTTCAATAGCTTTTATTTTGTTTATTTATGTTTAGATTGATAAAGTACTATT]

[-] EMBL AI026200             [TGAAATTTTTTTTTTATTCGGCTCTTTTTTAACGTCCCTCTTTTTTTCAAAGGTTTGAAGTTTTTTTACTTGTCCAAAATTTTACAGTTACATCTGTTTTGTATTGTCTTTCTTTCTTCAATAGCTTTTATTTTGTTTATTTATGTTTAGATTGATAAAGTACTATT]




>consensus_5710#1
TGAAATTTTTTTTTTATTCGGCTCTTTTTTAACGTCCCTCTTTTTTTCAAAGGTTTGAAG
TTTTTTTACTTGTCCAAAATTTTACAGTTACATCTGTTTTGTATTGTCTTTCTTTCTTCA
ATAGCTTTTATTTTGTTTATTTATGTTTAGATTGATAAAGTACTATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5710#0      NAGCCAATTTTCGGCACGAGGCTGAAAATCTTGTGTACTTCGCAGAATCACATACGAAAT 60
consensus_5710#1      ------------------------------------------------------------
                                                                                  

consensus_5710#0      TAGCGCGAAGTATGTTATCGGCATCACATGATCCTAACAAATGGTATCCATTTGCTGTAA 120
consensus_5710#1      ------------------------------------------------------------
                                                                                  

consensus_5710#0      CTGGTATCCACTTGACGAAGTTGTCATACAACTTCATGCTGAAAGGCCATCTAAAATGTC 180
consensus_5710#1      ------------------------------------------------------------
                                                                                  

consensus_5710#0      AATTCTATAATATGTCCTCATCAGCCAGCATCCAAGACTTCAACGAATTTTACTGTTATA 240
consensus_5710#1      ------------------------------------------------------------
                                                                                  

consensus_5710#0      CATTTTATTCTTTCCACAAATTCTGGACGAAACACCCTCGTGATATAATGCAATTCAATA 300
consensus_5710#1      ------------------------------------------------------------
                                                                                  

consensus_5710#0      AATATTGTGACGATTTCGGAAATAAATTGAAATGTCTTCTATTAGATGTAAACTGTAGAT 360
consensus_5710#1      ------------------------------------------------------------
                                                                                  

consensus_5710#0      TATGTTTGCCGGAAGATAAAAATAAATGATTCATGTGTCTCCGTCTTTCCGGCATTAGTA 420
consensus_5710#1      ------------------------------------------------------------
                                                                                  

consensus_5710#0      AGTAAATCACAAGTTATACGAATAACTTAATGTATTTAATGTGGTGCTAACTATGGTTAG 480
consensus_5710#1      ------------------------------------------------------------
                                                                                  

consensus_5710#0      TTGTACCACATTTATTGTAATATTCACAAGTGTGATATCTGCTATTTTCGTTTGAATTTT 540
consensus_5710#1      ------------------------------------------------------------
                                                                                  

consensus_5710#0      TAAGTATAATGATACTTTGTAATCCTTTAGTATGTGAAATCCACGAAATGAAATCTGTAT 600
consensus_5710#1      ------------------------------------------------TGAAATTTTTTT 12
                                                                      ****** * * *

consensus_5710#0      TT-ATTCTGCTCCCATT-AACGTCCCTCTTTTTTTCAAAGGCATGAAGAAATCT-GCTTG 657
consensus_5710#1      TTTATTCGGCTCTTTTTTAACGTCCCTCTTTTTTTCAAAGGTTTGAAGTTTTTTTACTTG 72
                      ** **** ****   ** ***********************  *****   * *  ****

consensus_5710#0      TCCAAAATCTTACAGTTACATCTGTTAAGTATTGTCTTTCTTTCTTCAATAGCTATTATT 717
consensus_5710#1      TCCAAAATTTTACAGTTACATCTGTTTTGTATTGTCTTTCTTTCTTCAATAGCTTTTATT 132
                      ******** *****************  ************************** *****

consensus_5710#0      TTGTTTATTTATGTTTAGATTGATAAAGTACATTT 752
consensus_5710#1      TTGTTTATTTATGTTTAGATTGATAAAGTACTATT 167
                      *******************************  **