These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5718#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1056 fasta sequence [TCGAGGCCANAATTCGGCACGAGGTGGTCTACAGATAGTTTTCCGAAACATTTCTTCGTCGCTTTGATGCTGAGAAAACTGGTGTTATAACATTAGAACAATATTGTAAAGCATTAGGTCTTGTTCCAAAACAAGCGCGGGAATTACGAAGACGTCGTACAACCGTCTTATTAGAACAACTTATTCCACGTGATTTAGAAATTATCTATGATGATATGGAATTAGAAATGAAAGTTAAAGTAATGGAATTATTTATTAATGATTTACGTGAATCTGGTCGTAAAACTAATATTGATATGGAAAAATTAGATCAATCTATGCAACGTTTAAAAGAGTATTTAGATACACGTTATGGTAAATCATGGCATATTATTACATCAATTAATCAACATTTGGGAAGATTTAGTTATGAACCAAATACATTATTTCATTTTTGTTTAGGTAGATTTGTTGTATTAATATGGAAAACACCATGTTCTGCTTAATTAAAATAAAAAGAACAAATGAAATACCCCCCCCCTTAGTAACAACATGTTCCATTTGTTCCCTTCTTCTTCTTCTTCTTATTTAAGGTTACTACTTTAAATGATTTAGTTACTCTGTTGTTNTACTGACTTATNTTCTTCTTTTAATTTTGTATTTAATCTAAAGACTACTGATATATATATACATCTTTATTTAAAAGGCAATTAGGGTTTTTATAACTATGCATATATTACCTTTGTGAAATTGAAATATGCTATTACTGAGATAAATGCACATGCAAGCAATCTTAAAGTAGACTACTACCACTACTACTACTACTACTTCTACTACTACTACTACTACTAATAATAATAATAATAATAATAATCACATCCTTTCCATTTCCATTGTGATACACCTGAATTAAGAAGAAGAAGTAGAAGAAAAGTAAAATGATTGTTTTAAGTTATATTTATTTGTTTAGTATCTTGTTGATATTACAGTTTTGTAATGTGGATTTCTTTTTTTTAGAGAATTAATAAATTTATTAAACAAGTTCAAAAAAAATTAAAAAAAACAAGNCTGNCCGCG] [+] EMBL CD082514 [TCGAGGCCANAATTCGGCACGAGGTGGTCTACAGATAGTTTTCCGAAACATTTCTTCGTCGCTTTGATGCTGAGAAAACTGGTGTTATAACATTAGAACAATATTGTAAAGCATTAGGTCTTGTTCCAAAACAAGCGCGGGAATTACGAAGACGTCGTACAACCGTCTTATTAGAACAACTTATTCCACGTGATTTAGAAATTATCTATGATGATATGGAATTAGAAATGAAAGTTAAAGTAATGGAATTATTTATTAATGATTTACGTGAATCTGGTCGTAAAACTAATATTGATATGGAAAAATTAGATCAATCTATGCAACGTTTAAAAGAGTATTTAGATACACGTTATGGTAAATCATGGCATATTATTACATCAATTAATCAACATTTGGGAAGATTTAGTTATGAACCAAATACATTATTTCATTTTTGTTTAGGTAGATTTGTTGTATTAATATGGAAAACACCATGTTCTGCTTAATTAAAATAAAAAGAACAAATGAAATACCCCCCCCCTTAGTAACAACATGTTCCATTTGTTCCCTTCTTCTTCTTCTTCTTATTTAAGGTTACTACTTTAAATGATTTAGTTACTCTGTTGTTNTACTGACTTATNTTCTT ] [-] EMBL CD076109 [ TGTTCTGCTTAATTAAAATAAAAAGAACAAATGAAATACCCCCCCCCTTAGTAACAACATGTTCCATTTGTTCCCTTCTTCTTCTTCTTCTTATTTAAGGTTACTACTTTAAATGATTTAGTTACTCTGTTGTTTTACTGACTTATTTTCTTCTTTTAATTTTGTATTTAATCTAAAGACTACTGATATATATATACATCTTTATTTAAAAGGCAATTAGGGTTTTTATAACTATGCATATATTACCTTTGTGAAATTGAAATATGCTATTACTGAGATAAATGCACATGCAAGCAATCTTAAAGTAGACTACTACCACTACTACTACTACTACTTCTACTACTACTACTACTACTAATAATAATAATAATAATAATAATCACATCCTTTCCATTTCCATTGTGATACACCTGAATTAAGAAGAAGAAGTAGAAGAAAAGTAAAATGATTGTTTTAAGTTATATTTATTTGTTTAGTATCTTGTTGATATTACAGTTTTGTAATGTGGATTTCTTTTTTTTAGAGAATTAATAAATTTATTAAACAAGTTCAAAAAAAATTAAAAAAAACAAGNCTGNCCGCG] consensusID : consensus_5718#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 154 fasta sequence [TCGTGAAGTTATATCATTGAATGATTTAAGTTCATATAATAAAAAACATGGTCTACAAGATAGTTTTCCAGAAACATTTCTTCGTCGCTTTGATGCTGAGAAAACTGGTGTTATAACATTAGAACAATATTGTAAAGCATTAGGTCTTGTTCCA] [+] EMBL CD084065 [TCGTGAAGTTATATCATTGAATGATTTAAGTTCATATAATAAAAAACATGGTCTACAAGATAGTTTTCCAGAAACATTTCTTCGTCGCTTTGATGCTGAGAAAACTGGTGTTATAACATTAGAACAATATTGTAAAGCATTAGGTCTTGTTCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5718#0 ------------------------TCGAGGCCANAATTCGGCACGAGGTGGTCTACA-GA 35 consensus_5718#1 TCGTGAAGTTATATCATTGAATGATTTAAGTTCATATAATAAAAAACATGGTCTACAAGA 60 * * * ** * * ********* ** consensus_5718#0 TAGTTTTCC-GAAACATTTCTTCGTCGCTTTGATGCTGAGAAAACTGGTGTTATAACATT 94 consensus_5718#1 TAGTTTTCCAGAAACATTTCTTCGTCGCTTTGATGCTGAGAAAACTGGTGTTATAACATT 120 ********* ************************************************** consensus_5718#0 AGAACAATATTGTAAAGCATTAGGTCTTGTTCCAAAACAAGCGCGGGAATTACGAAGACG 154 consensus_5718#1 AGAACAATATTGTAAAGCATTAGGTCTTGTTCCA-------------------------- 154 ********************************** consensus_5718#0 TCGTACAACCGTCTTATTAGAACAACTTATTCCACGTGATTTAGAAATTATCTATGATGA 214 consensus_5718#1 ------------------------------------------------------------ consensus_5718#0 TATGGAATTAGAAATGAAAGTTAAAGTAATGGAATTATTTATTAATGATTTACGTGAATC 274 consensus_5718#1 ------------------------------------------------------------ consensus_5718#0 TGGTCGTAAAACTAATATTGATATGGAAAAATTAGATCAATCTATGCAACGTTTAAAAGA 334 consensus_5718#1 ------------------------------------------------------------ consensus_5718#0 GTATTTAGATACACGTTATGGTAAATCATGGCATATTATTACATCAATTAATCAACATTT 394 consensus_5718#1 ------------------------------------------------------------ consensus_5718#0 GGGAAGATTTAGTTATGAACCAAATACATTATTTCATTTTTGTTTAGGTAGATTTGTTGT 454 consensus_5718#1 ------------------------------------------------------------ consensus_5718#0 ATTAATATGGAAAACACCATGTTCTGCTTAATTAAAATAAAAAGAACAAATGAAATACCC 514 consensus_5718#1 ------------------------------------------------------------ consensus_5718#0 CCCCCCTTAGTAACAACATGTTCCATTTGTTCCCTTCTTCTTCTTCTTCTTATTTAAGGT 574 consensus_5718#1 ------------------------------------------------------------ consensus_5718#0 TACTACTTTAAATGATTTAGTTACTCTGTTGTTNTACTGACTTATNTTCTTCTTTTAATT 634 consensus_5718#1 ------------------------------------------------------------ consensus_5718#0 TTGTATTTAATCTAAAGACTACTGATATATATATACATCTTTATTTAAAAGGCAATTAGG 694 consensus_5718#1 ------------------------------------------------------------ consensus_5718#0 GTTTTTATAACTATGCATATATTACCTTTGTGAAATTGAAATATGCTATTACTGAGATAA 754 consensus_5718#1 ------------------------------------------------------------ consensus_5718#0 ATGCACATGCAAGCAATCTTAAAGTAGACTACTACCACTACTACTACTACTACTTCTACT 814 consensus_5718#1 ------------------------------------------------------------ consensus_5718#0 ACTACTACTACTACTAATAATAATAATAATAATAATAATCACATCCTTTCCATTTCCATT 874 consensus_5718#1 ------------------------------------------------------------ consensus_5718#0 GTGATACACCTGAATTAAGAAGAAGAAGTAGAAGAAAAGTAAAATGATTGTTTTAAGTTA 934 consensus_5718#1 ------------------------------------------------------------ consensus_5718#0 TATTTATTTGTTTAGTATCTTGTTGATATTACAGTTTTGTAATGTGGATTTCTTTTTTTT 994 consensus_5718#1 ------------------------------------------------------------ consensus_5718#0 AGAGAATTAATAAATTTATTAAACAAGTTCAAAAAAAATTAAAAAAAACAAGNCTGNCCG 1054 consensus_5718#1 ------------------------------------------------------------ consensus_5718#0 CG 1056 consensus_5718#1 -- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||