cluster # 5718

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Schistosoma mansoni
cluster # 5718 cluster # 5718 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5718#0 length = 1056 sequences # 2

consensus_5718#1 length = 154 sequences # 1

consensusID : consensus_5718#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1056
fasta sequence

                              [TCGAGGCCANAATTCGGCACGAGGTGGTCTACAGATAGTTTTCCGAAACATTTCTTCGTCGCTTTGATGCTGAGAAAACTGGTGTTATAACATTAGAACAATATTGTAAAGCATTAGGTCTTGTTCCAAAACAAGCGCGGGAATTACGAAGACGTCGTACAACCGTCTTATTAGAACAACTTATTCCACGTGATTTAGAAATTATCTATGATGATATGGAATTAGAAATGAAAGTTAAAGTAATGGAATTATTTATTAATGATTTACGTGAATCTGGTCGTAAAACTAATATTGATATGGAAAAATTAGATCAATCTATGCAACGTTTAAAAGAGTATTTAGATACACGTTATGGTAAATCATGGCATATTATTACATCAATTAATCAACATTTGGGAAGATTTAGTTATGAACCAAATACATTATTTCATTTTTGTTTAGGTAGATTTGTTGTATTAATATGGAAAACACCATGTTCTGCTTAATTAAAATAAAAAGAACAAATGAAATACCCCCCCCCTTAGTAACAACATGTTCCATTTGTTCCCTTCTTCTTCTTCTTCTTATTTAAGGTTACTACTTTAAATGATTTAGTTACTCTGTTGTTNTACTGACTTATNTTCTTCTTTTAATTTTGTATTTAATCTAAAGACTACTGATATATATATACATCTTTATTTAAAAGGCAATTAGGGTTTTTATAACTATGCATATATTACCTTTGTGAAATTGAAATATGCTATTACTGAGATAAATGCACATGCAAGCAATCTTAAAGTAGACTACTACCACTACTACTACTACTACTTCTACTACTACTACTACTACTAATAATAATAATAATAATAATAATCACATCCTTTCCATTTCCATTGTGATACACCTGAATTAAGAAGAAGAAGTAGAAGAAAAGTAAAATGATTGTTTTAAGTTATATTTATTTGTTTAGTATCTTGTTGATATTACAGTTTTGTAATGTGGATTTCTTTTTTTTAGAGAATTAATAAATTTATTAAACAAGTTCAAAAAAAATTAAAAAAAACAAGNCTGNCCGCG]

[+] EMBL CD082514             [TCGAGGCCANAATTCGGCACGAGGTGGTCTACAGATAGTTTTCCGAAACATTTCTTCGTCGCTTTGATGCTGAGAAAACTGGTGTTATAACATTAGAACAATATTGTAAAGCATTAGGTCTTGTTCCAAAACAAGCGCGGGAATTACGAAGACGTCGTACAACCGTCTTATTAGAACAACTTATTCCACGTGATTTAGAAATTATCTATGATGATATGGAATTAGAAATGAAAGTTAAAGTAATGGAATTATTTATTAATGATTTACGTGAATCTGGTCGTAAAACTAATATTGATATGGAAAAATTAGATCAATCTATGCAACGTTTAAAAGAGTATTTAGATACACGTTATGGTAAATCATGGCATATTATTACATCAATTAATCAACATTTGGGAAGATTTAGTTATGAACCAAATACATTATTTCATTTTTGTTTAGGTAGATTTGTTGTATTAATATGGAAAACACCATGTTCTGCTTAATTAAAATAAAAAGAACAAATGAAATACCCCCCCCCTTAGTAACAACATGTTCCATTTGTTCCCTTCTTCTTCTTCTTCTTATTTAAGGTTACTACTTTAAATGATTTAGTTACTCTGTTGTTNTACTGACTTATNTTCTT                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD076109             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TGTTCTGCTTAATTAAAATAAAAAGAACAAATGAAATACCCCCCCCCTTAGTAACAACATGTTCCATTTGTTCCCTTCTTCTTCTTCTTCTTATTTAAGGTTACTACTTTAAATGATTTAGTTACTCTGTTGTTTTACTGACTTATTTTCTTCTTTTAATTTTGTATTTAATCTAAAGACTACTGATATATATATACATCTTTATTTAAAAGGCAATTAGGGTTTTTATAACTATGCATATATTACCTTTGTGAAATTGAAATATGCTATTACTGAGATAAATGCACATGCAAGCAATCTTAAAGTAGACTACTACCACTACTACTACTACTACTTCTACTACTACTACTACTACTAATAATAATAATAATAATAATAATCACATCCTTTCCATTTCCATTGTGATACACCTGAATTAAGAAGAAGAAGTAGAAGAAAAGTAAAATGATTGTTTTAAGTTATATTTATTTGTTTAGTATCTTGTTGATATTACAGTTTTGTAATGTGGATTTCTTTTTTTTAGAGAATTAATAAATTTATTAAACAAGTTCAAAAAAAATTAAAAAAAACAAGNCTGNCCGCG]




>consensus_5718#0
TCGAGGCCANAATTCGGCACGAGGTGGTCTACAGATAGTTTTCCGAAACATTTCTTCGTC
GCTTTGATGCTGAGAAAACTGGTGTTATAACATTAGAACAATATTGTAAAGCATTAGGTC
TTGTTCCAAAACAAGCGCGGGAATTACGAAGACGTCGTACAACCGTCTTATTAGAACAAC
TTATTCCACGTGATTTAGAAATTATCTATGATGATATGGAATTAGAAATGAAAGTTAAAG
TAATGGAATTATTTATTAATGATTTACGTGAATCTGGTCGTAAAACTAATATTGATATGG
AAAAATTAGATCAATCTATGCAACGTTTAAAAGAGTATTTAGATACACGTTATGGTAAAT
CATGGCATATTATTACATCAATTAATCAACATTTGGGAAGATTTAGTTATGAACCAAATA
CATTATTTCATTTTTGTTTAGGTAGATTTGTTGTATTAATATGGAAAACACCATGTTCTG
CTTAATTAAAATAAAAAGAACAAATGAAATACCCCCCCCCTTAGTAACAACATGTTCCAT
TTGTTCCCTTCTTCTTCTTCTTCTTATTTAAGGTTACTACTTTAAATGATTTAGTTACTC
TGTTGTTNTACTGACTTATNTTCTTCTTTTAATTTTGTATTTAATCTAAAGACTACTGAT
ATATATATACATCTTTATTTAAAAGGCAATTAGGGTTTTTATAACTATGCATATATTACC
TTTGTGAAATTGAAATATGCTATTACTGAGATAAATGCACATGCAAGCAATCTTAAAGTA
GACTACTACCACTACTACTACTACTACTTCTACTACTACTACTACTACTAATAATAATAA
TAATAATAATAATCACATCCTTTCCATTTCCATTGTGATACACCTGAATTAAGAAGAAGA
AGTAGAAGAAAAGTAAAATGATTGTTTTAAGTTATATTTATTTGTTTAGTATCTTGTTGA
TATTACAGTTTTGTAATGTGGATTTCTTTTTTTTAGAGAATTAATAAATTTATTAAACAA
GTTCAAAAAAAATTAAAAAAAACAAGNCTGNCCGCG

consensusID : consensus_5718#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 154
fasta sequence

                              [TCGTGAAGTTATATCATTGAATGATTTAAGTTCATATAATAAAAAACATGGTCTACAAGATAGTTTTCCAGAAACATTTCTTCGTCGCTTTGATGCTGAGAAAACTGGTGTTATAACATTAGAACAATATTGTAAAGCATTAGGTCTTGTTCCA]

[+] EMBL CD084065             [TCGTGAAGTTATATCATTGAATGATTTAAGTTCATATAATAAAAAACATGGTCTACAAGATAGTTTTCCAGAAACATTTCTTCGTCGCTTTGATGCTGAGAAAACTGGTGTTATAACATTAGAACAATATTGTAAAGCATTAGGTCTTGTTCCA]




>consensus_5718#1
TCGTGAAGTTATATCATTGAATGATTTAAGTTCATATAATAAAAAACATGGTCTACAAGA
TAGTTTTCCAGAAACATTTCTTCGTCGCTTTGATGCTGAGAAAACTGGTGTTATAACATT
AGAACAATATTGTAAAGCATTAGGTCTTGTTCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5718#0      ------------------------TCGAGGCCANAATTCGGCACGAGGTGGTCTACA-GA 35
consensus_5718#1      TCGTGAAGTTATATCATTGAATGATTTAAGTTCATATAATAAAAAACATGGTCTACAAGA 60
                                              *  * *     **     *  *  ********* **

consensus_5718#0      TAGTTTTCC-GAAACATTTCTTCGTCGCTTTGATGCTGAGAAAACTGGTGTTATAACATT 94
consensus_5718#1      TAGTTTTCCAGAAACATTTCTTCGTCGCTTTGATGCTGAGAAAACTGGTGTTATAACATT 120
                      ********* **************************************************

consensus_5718#0      AGAACAATATTGTAAAGCATTAGGTCTTGTTCCAAAACAAGCGCGGGAATTACGAAGACG 154
consensus_5718#1      AGAACAATATTGTAAAGCATTAGGTCTTGTTCCA-------------------------- 154
                      **********************************                          

consensus_5718#0      TCGTACAACCGTCTTATTAGAACAACTTATTCCACGTGATTTAGAAATTATCTATGATGA 214
consensus_5718#1      ------------------------------------------------------------
                                                                                  

consensus_5718#0      TATGGAATTAGAAATGAAAGTTAAAGTAATGGAATTATTTATTAATGATTTACGTGAATC 274
consensus_5718#1      ------------------------------------------------------------
                                                                                  

consensus_5718#0      TGGTCGTAAAACTAATATTGATATGGAAAAATTAGATCAATCTATGCAACGTTTAAAAGA 334
consensus_5718#1      ------------------------------------------------------------
                                                                                  

consensus_5718#0      GTATTTAGATACACGTTATGGTAAATCATGGCATATTATTACATCAATTAATCAACATTT 394
consensus_5718#1      ------------------------------------------------------------
                                                                                  

consensus_5718#0      GGGAAGATTTAGTTATGAACCAAATACATTATTTCATTTTTGTTTAGGTAGATTTGTTGT 454
consensus_5718#1      ------------------------------------------------------------
                                                                                  

consensus_5718#0      ATTAATATGGAAAACACCATGTTCTGCTTAATTAAAATAAAAAGAACAAATGAAATACCC 514
consensus_5718#1      ------------------------------------------------------------
                                                                                  

consensus_5718#0      CCCCCCTTAGTAACAACATGTTCCATTTGTTCCCTTCTTCTTCTTCTTCTTATTTAAGGT 574
consensus_5718#1      ------------------------------------------------------------
                                                                                  

consensus_5718#0      TACTACTTTAAATGATTTAGTTACTCTGTTGTTNTACTGACTTATNTTCTTCTTTTAATT 634
consensus_5718#1      ------------------------------------------------------------
                                                                                  

consensus_5718#0      TTGTATTTAATCTAAAGACTACTGATATATATATACATCTTTATTTAAAAGGCAATTAGG 694
consensus_5718#1      ------------------------------------------------------------
                                                                                  

consensus_5718#0      GTTTTTATAACTATGCATATATTACCTTTGTGAAATTGAAATATGCTATTACTGAGATAA 754
consensus_5718#1      ------------------------------------------------------------
                                                                                  

consensus_5718#0      ATGCACATGCAAGCAATCTTAAAGTAGACTACTACCACTACTACTACTACTACTTCTACT 814
consensus_5718#1      ------------------------------------------------------------
                                                                                  

consensus_5718#0      ACTACTACTACTACTAATAATAATAATAATAATAATAATCACATCCTTTCCATTTCCATT 874
consensus_5718#1      ------------------------------------------------------------
                                                                                  

consensus_5718#0      GTGATACACCTGAATTAAGAAGAAGAAGTAGAAGAAAAGTAAAATGATTGTTTTAAGTTA 934
consensus_5718#1      ------------------------------------------------------------
                                                                                  

consensus_5718#0      TATTTATTTGTTTAGTATCTTGTTGATATTACAGTTTTGTAATGTGGATTTCTTTTTTTT 994
consensus_5718#1      ------------------------------------------------------------
                                                                                  

consensus_5718#0      AGAGAATTAATAAATTTATTAAACAAGTTCAAAAAAAATTAAAAAAAACAAGNCTGNCCG 1054
consensus_5718#1      ------------------------------------------------------------
                                                                                  

consensus_5718#0      CG 1056
consensus_5718#1      --