cluster # 5730

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Schistosoma mansoni
cluster # 5730 cluster # 5730 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5730#0 length = 251 sequences # 1

consensus_5730#1 length = 149 sequences # 2

consensusID : consensus_5730#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 251
fasta sequence

                              [CTCCAGGAGCACCTGCAGCACCAGACGCACCACCACCAGCTTCAGCAACACCAGATTCGCCTGCCACCACCAAGTCAACTGGACGTCCGAAACCGTCGAGGAGAGAAACAAGAACAGCCCACCCACCCAGATCACCACCACGTGCTCGTAGTCCTCACGCTCCAACACATCCAAGAAAATACCAACGTCCACCACAAGATGGTAGAAAATCGGTGCAAATTCTGAGGTGAACGCAGCCAGTGTGTTCATCA]

[+] EMBL CD141643             [CTCCAGGAGCACCTGCAGCACCAGACGCACCACCACCAGCTTCAGCAACACCAGATTCGCCTGCCACCACCAAGTCAACTGGACGTCCGAAACCGTCGAGGAGAGAAACAAGAACAGCCCACCCACCCAGATCACCACCACGTGCTCGTAGTCCTCACGCTCCAACACATCCAAGAAAATACCAACGTCCACCACAAGATGGTAGAAAATCGGTGCAAATTCTGAGGTGAACGCAGCCAGTGTGTTCATCA]




>consensus_5730#0
CTCCAGGAGCACCTGCAGCACCAGACGCACCACCACCAGCTTCAGCAACACCAGATTCGC
CTGCCACCACCAAGTCAACTGGACGTCCGAAACCGTCGAGGAGAGAAACAAGAACAGCCC
ACCCACCCAGATCACCACCACGTGCTCGTAGTCCTCACGCTCCAACACATCCAAGAAAAT
ACCAACGTCCACCACAAGATGGTAGAAAATCGGTGCAAATTCTGAGGTGAACGCAGCCAG
TGTGTTCATCA

consensusID : consensus_5730#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 149
fasta sequence

                              [GTTGCTGATCAGGTGATCCGACTGGAGCTGAGGGTGCGCCATCTCCAGCTTCAGCAACACCAGATTCGCCTGCCACCACCAAGTCAACTGGACGTCCGAAACCGTCGAGGAGAGAAACAAGAACAGCCCACCCACCCAGATCACCACCA]

[-] EMBL CD136308             [GTTGCTGATCAGGTGATCCGACTGGAGCTGAGGGTGCGCCATCTCCAGCTTCAGCAACACCAGATTCGCCTGCCACCACCAAGTCAACTGGACGTCCGAAACCGTCGAGGAGAGAAACAAGAACAGCCCACCCACCCAGATCACCACCA]
[-] EMBL CD136298             [GTTGCTGATCAGGTGATCCGACTGGAGCTGAGGGTGCGCCATCTCCAGCTTCAGCAACACCGGATTCGCCTGCCACCACCAAGTCAACTGGACGTCCGAAACCGTCGAGGAGAGAAACAAGAACAGCCCACCCATCCAGATCACCACCA]




>consensus_5730#1
GTTGCTGATCAGGTGATCCGACTGGAGCTGAGGGTGCGCCATCTCCAGCTTCAGCAACAC
CAGATTCGCCTGCCACCACCAAGTCAACTGGACGTCCGAAACCGTCGAGGAGAGAAACAA
GAACAGCCCACCCACCCAGATCACCACCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5730#0      ------CTCCAGGAG---CACCTGCAGCACCAGACGCACCACCACCAGCTTCAGCAACAC 51
consensus_5730#1      GTTGCTGATCAGGTGATCCGACTGGAGCTGAGGGTGCGCCATCTCCAGCTTCAGCAACAC 60
                               **** *   *  *** ***    *  ** *** * ****************

consensus_5730#0      CAGATTCGCCTGCCACCACCAAGTCAACTGGACGTCCGAAACCGTCGAGGAGAGAAACAA 111
consensus_5730#1      CAGATTCGCCTGCCACCACCAAGTCAACTGGACGTCCGAAACCGTCGAGGAGAGAAACAA 120
                      ************************************************************

consensus_5730#0      GAACAGCCCACCCACCCAGATCACCACCACGTGCTCGTAGTCCTCACGCTCCAACACATC 171
consensus_5730#1      GAACAGCCCACCCACCCAGATCACCACCA------------------------------- 149
                      *****************************                               

consensus_5730#0      CAAGAAAATACCAACGTCCACCACAAGATGGTAGAAAATCGGTGCAAATTCTGAGGTGAA 231
consensus_5730#1      ------------------------------------------------------------
                                                                                  

consensus_5730#0      CGCAGCCAGTGTGTTCATCA 251
consensus_5730#1      --------------------