cluster # 5736

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Schistosoma mansoni
cluster # 5736 cluster # 5736 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5736#0 length = 507 sequences # 2

consensus_5736#1 length = 338 sequences # 1

consensusID : consensus_5736#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 507
fasta sequence

                              [CGATTTCCAGACTAGATGGAAGGTTGGTCCCTTCACCTTTTTTGTGTGTGGAGTCTGAAAATTATTTTCCGACATCTGCAGGGCTGGCATCTAGTGCATCTGGAACTGCAGCGTTCGCATTTGCATTAGGCACGATGTATGGTTTGGACGGTGACTACACTTCTCTTTCACGGCGTGGTTCTGGATCATCATGCCGGAGCTTACTAGGAGGGTTTGTACAATGGTCTAACAACCATGATGATCACACTTCTGTCCAACAACTGTTTCCTGCATCGTATTGGCCAGAACTTAGAGTTCTTATATGCGTTACTAATGAAAACCCTAAACCTGTTGGCTCGACTGATGCAATGCTTTGCTGCGTAAAAACCAGTTATTTGTTTCGAAATGGCCGTGTACCATCTTCTAAAATACATGAAAAAGAGATTATTTCAGCCTTAAAAGATCGTGACTTCTCTGCATTAGCAGAAGTGACTATGCGTGAAAGTAACCAACTTCACGCTTTATGCC]

[+] EMBL CD180393             [CGATTTCCAGACTAGATGGAAGGTTGGTCCCTTCACCTTTTTTGTGTGTGGAGTCTGAAAATTATTTTCCGACATCTGCAGGGCTGGCATCTAGTGCATCTGGAACTGCAGCGTTCGCATTTGCATTAGGCACGATGTATGGTTTGGACGGTGACTACACTTCTCTTTCACGGCGTGGTTCTGGATCATCATGCCGGAGCTTACTAGGAGGGTTTGTACAATGGTCTAACAACCATGATGATCACACTTCTGTCCAACAACTGTTTCCTGCATCGTATTGGCCAGAACTTAGAGTTCTTATATGCGTTACTAATGAAAACCCTAAACCTGTTGGCTCGACTGATGCAATGCTTTGCTGCGTAAAAACCAGTTATTTGTTTCGAAATGGCCGTGTACCATCTTCTAAAATACATGAAAAAGAGATTATTTCAGCCTTAAAAGATCGTGACTTCTCTGCATTAGCAGAAGTGACTATGCGTGAAAGTAA                    ]
[-] EMBL CD136273             [                                                                                                                                                                                                                            ATGGTCTAACGACCATGATGATCACACTTCTGTCCAACAACTGTTTCCTGCATCGTATTGGCCAGAACTTAGAGTTCTTATATGCGTTACTAATGAAAACCCTAAACCTGTTGGCTCGACTGATGCAATGCTTTGCTGCGTAAAAACCAGTTATTTGTTTCGAAATGGCCGTGTACCATCTTCTAAAATACATGAAAAAGAGATTATTTCAGCCTTAAAAGATCGTGACTTCTCTGCATTAGCAGAAGTGACTATGCGTGAAAGTAACCAACTTCACGCTTTATGCC]




>consensus_5736#0
CGATTTCCAGACTAGATGGAAGGTTGGTCCCTTCACCTTTTTTGTGTGTGGAGTCTGAAA
ATTATTTTCCGACATCTGCAGGGCTGGCATCTAGTGCATCTGGAACTGCAGCGTTCGCAT
TTGCATTAGGCACGATGTATGGTTTGGACGGTGACTACACTTCTCTTTCACGGCGTGGTT
CTGGATCATCATGCCGGAGCTTACTAGGAGGGTTTGTACAATGGTCTAACAACCATGATG
ATCACACTTCTGTCCAACAACTGTTTCCTGCATCGTATTGGCCAGAACTTAGAGTTCTTA
TATGCGTTACTAATGAAAACCCTAAACCTGTTGGCTCGACTGATGCAATGCTTTGCTGCG
TAAAAACCAGTTATTTGTTTCGAAATGGCCGTGTACCATCTTCTAAAATACATGAAAAAG
AGATTATTTCAGCCTTAAAAGATCGTGACTTCTCTGCATTAGCAGAAGTGACTATGCGTG
AAAGTAACCAACTTCACGCTTTATGCC

consensusID : consensus_5736#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 338
fasta sequence

                              [CGTTCGCATTTGCATTAGGCACGATGTATGGTTTGGACGGTGACTACACTTCTCTTTCACGGCGTGGTTCTGGATCATCATGCCGGAGCTTACTAGGAGGGTTTGTACAATGGTCTAACAACCATGATGATCACACTTCTGTCCAACAACTGTTTCCTGCATCGTATTGGCCAGAACTTAGAGTTCTTATATGCGTTACTGTTATTTTGTCAAAAACGTGATTCGTTGCATATGAAGTTTTCAATGCTAGTAGTTTTTCGCAAACACTCACAGGCTGTTACAGGTTGATAAGTACTACATTAGTCAGCCAGCTACGGCATATATGCATCGGTTCAAGT]

[+] EMBL CD186614             [CGTTCGCATTTGCATTAGGCACGATGTATGGTTTGGACGGTGACTACACTTCTCTTTCACGGCGTGGTTCTGGATCATCATGCCGGAGCTTACTAGGAGGGTTTGTACAATGGTCTAACAACCATGATGATCACACTTCTGTCCAACAACTGTTTCCTGCATCGTATTGGCCAGAACTTAGAGTTCTTATATGCGTTACTGTTATTTTGTCAAAAACGTGATTCGTTGCATATGAAGTTTTCAATGCTAGTAGTTTTTCGCAAACACTCACAGGCTGTTACAGGTTGATAAGTACTACATTAGTCAGCCAGCTACGGCATATATGCATCGGTTCAAGT]




>consensus_5736#1
CGTTCGCATTTGCATTAGGCACGATGTATGGTTTGGACGGTGACTACACTTCTCTTTCAC
GGCGTGGTTCTGGATCATCATGCCGGAGCTTACTAGGAGGGTTTGTACAATGGTCTAACA
ACCATGATGATCACACTTCTGTCCAACAACTGTTTCCTGCATCGTATTGGCCAGAACTTA
GAGTTCTTATATGCGTTACTGTTATTTTGTCAAAAACGTGATTCGTTGCATATGAAGTTT
TCAATGCTAGTAGTTTTTCGCAAACACTCACAGGCTGTTACAGGTTGATAAGTACTACAT
TAGTCAGCCAGCTACGGCATATATGCATCGGTTCAAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5736#0      CGATTTCCAGACTAGATGGAAGGTTGGTCCCTTCACCTTTTTTGTGTGTGGAGTCTGAAA 60
consensus_5736#1      ------------------------------------------------------------
                                                                                  

consensus_5736#0      ATTATTTTCCGACATCTGCAGGGCTGGCATCTAGTGCATCTGGAACTGCAGCGTTCGCAT 120
consensus_5736#1      ---------------------------------------------------CGTTCGCAT 9
                                                                         *********

consensus_5736#0      TTGCATTAGGCACGATGTATGGTTTGGACGGTGACTACACTTCTCTTTCACGGCGTGGTT 180
consensus_5736#1      TTGCATTAGGCACGATGTATGGTTTGGACGGTGACTACACTTCTCTTTCACGGCGTGGTT 69
                      ************************************************************

consensus_5736#0      CTGGATCATCATGCCGGAGCTTACTAGGAGGGTTTGTACAATGGTCTAACAACCATGATG 240
consensus_5736#1      CTGGATCATCATGCCGGAGCTTACTAGGAGGGTTTGTACAATGGTCTAACAACCATGATG 129
                      ************************************************************

consensus_5736#0      ATCACACTTCTGTCCAACAACTGTTTCCTGCATCGTATTGGCCAGAACTTAGAGTTCTTA 300
consensus_5736#1      ATCACACTTCTGTCCAACAACTGTTTCCTGCATCGTATTGGCCAGAACTTAGAGTTCTTA 189
                      ************************************************************

consensus_5736#0      TATGCGTTACTAATGAAAACCCTAAACCTGTTGGCTCGACTGATGCAATGCTTTGCTGCG 360
consensus_5736#1      TATGCGTTACTGTTATTTTGTCAAAAAC--GTGATTCGTTGCATATGAAGTTTTC----- 242
                      ***********  *       * *** *   **  ***    **   * * ***      

consensus_5736#0      TAAAAACCAGTTATTTGTTTCGAAATGGCCGTGTACCATCTTCTAAAATACATGAAAAAG 420
consensus_5736#1      --AATGCTAGTAGTTT-TTCGCAAACACTCACAGGCTGTTAC---AGGTTGATAAGTACT 296
                        **  * ***  *** **   ***    *     *  *      *  *  ** *  *  

consensus_5736#0      AGATTATTTCAGCCTTAAAAGATCGTGACTTCTCTGCATTAGCAGAAGTGACTATGCGTG 480
consensus_5736#1      ACATTAGT-CAGCC------AGCTACGGCATATATGCATCGGTTCAAGT----------- 338
                      * **** * *****            * * * * *****  *   ****           

consensus_5736#0      AAAGTAACCAACTTCACGCTTTATGCC 507
consensus_5736#1      ---------------------------