These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5745#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 655 fasta sequence [CGTAAAGATGGACCTTTAGGGATAATAATTCTTCCTTCAAGAGAATTAGCAACACAAACCTTTGATGTCTTCAAAATTCTGTCTCAAGCTTGCGTACGTATTGTTCCAGGATTGTTGGTTGGAGGGATGAAACGGAAATCACAGAAAGCAAGTCTAAGAAAGGGTATCAATATTCTAATTGGTACACCAAAGCGCATTCTTGATCATATGGGACATACGTCCACACTTGATCTTCGGAGAATACAATGGCTAGTAATAGATGAAGCTGATCGTTTGTTAGAAATGGGATTCGAACGAGATGTTAAACAGATTGTTGAAGGATTAATGCAGCAGTTCAATTGTTTTTCGACGGAAAATAAATCCATATCAAAAATTCAAACCGTTCTTTTATCAGCAACATTATCTCCGGGAGTGGAAGCTCTTGCTGGTATAACTTTGAAGAATCCTGTGCGTTGCGTGGTTGGCGAAAGTGAAACAAACATTCCTAATACACAACTTTCTATGACGAAAGCCTCTGAAGTAGAGTTANATACACAAGTAAATAATGTTGCTGAATTTGCTCTTCCTGCAGGGTTGAAACATTTTGCACTAATTGTTCCTTGGAAACTGAGGCTTGTCTCATTGGCAGCTTTCTTATTACTTTAAATGTAATATC] [+] EMBL CD096735 [CGTAAAGATGGACCTTTAGGGATAATAATTCTTCCTTCAAGAGAATTAGCAACACAAACCTTTGATGTCTTCAAAATTCTGTCTCAAGCTTGCGTACGTATTGTTCCAGGATTGTTGGTTGGAGGGATGAAACGGAAATCACAGAAAGCAAGTCTAAGAAAGGGTATCAATATTCTAATTGGTACACCAAAGCGCATTCTTGATCATATGGGACATACGTCCACACTTGATCTTCGGAGAATACAATGGCTAGTAATAGATGAAGCTGATCGTTTGTTAGAAATGGGATTCGAACGAGATGTTAAACAGATTGTTGAA ] [+] EMBL CD181785 [ AGAAATGGGATTCGAACGAGATGTTAAACAGATTGTTGAAGGATTAATGCAGCAGTTCAATTGTTTTTCGACGGAAAATAAATCCATATCAAAAATTCAAACCGTTCTTTTATCAGCAACATTATCTCCGGGAGTGGAAGCTCTTGCTGGTATAACTTTGAAGAATCCTGTGCGTTGCGTGGTTGGCGAAAGTGAAACAAACATTCCTAATACACAACTTTCTATGACGAAAGCCTCTGAAGTAGAGTTANATACACAAGTAAATAATGTTGCTGAATTTGCTCTTCCTGCAGGGTTGAAACATTTTGCACTAATTGTTCCTTGGAAACTGAGGCTTGTCTCATTGGCAGCTTTCTTATTACTTTAAATGTAATATC] consensusID : consensus_5745#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 314 fasta sequence [GGCTGGTCTCATTCTCTTTACTAATTATTCCCTTGCAACAGTCTAAGAAAGGGTATCAATATTCTAATTGGTACACCAAAGCGCATTCTTGATCATATGGGACATACGTCCACACTTGATCTTCGGAGAATACAATGGCTAGTAATAGATGAAGCTGATCATTTGTTAGAAATGGGATTCGAACGAGATGTTAAACAGATTGTTGAAGGATTAATGCAGCAGTTCAATTGTTTTTCGACGGAAAATAAATCCATATCAAAAATTCAAACCGTTCTTTTATCAGCAACATTATCTCCGGGTACGTTTTCCTTCCA] [-] EMBL CD177853 [GGCTGGTCTCATTCTCTTTACTAATTATTCCCTTGCAACAGTCTAAGAAAGGGTATCAATATTCTAATTGGTACACCAAAGCGCATTCTTGATCATATGGGACATACGTCCACACTTGATCTTCGGAGAATACAATGGCTAGTAATAGATGAAGCTGATCATTTGTTAGAAATGGGATTCGAACGAGATGTTAAACAGATTGTTGAAGGATTAATGCAGCAGTTCAATTGTTTTTCGACGGAAAATAAATCCATATCAAAAATTCAAACCGTTCTTTTATCAGCAACATTATCTCCGGGTACGTTTTCCTTCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5745#0 CGTAAAGATGGACCTTTAGGGATAATAATTCTTCCTTCAAGAGAATTAGCAACACAAACC 60 consensus_5745#1 ------------------------------------------------------------ consensus_5745#0 TTTGATGTCTTCAAAATTCTGTCTCAAGCTTGCGTACGTATTGTTCCAGGATTGTTGGTT 120 consensus_5745#1 ----------------------------------------------------GGCTGGTC 8 * **** consensus_5745#0 GGAGGGATGAAACGGA--AATCACAGAAAGCAAGTCTAAGAAAGGGTATCAATATTCTAA 178 consensus_5745#1 TCATTCTCTTTACTAATTATTCCCTTGCAACA-GTCTAAGAAAGGGTATCAATATTCTAA 67 * ** * * ** * * ** *************************** consensus_5745#0 TTGGTACACCAAAGCGCATTCTTGATCATATGGGACATACGTCCACACTTGATCTTCGGA 238 consensus_5745#1 TTGGTACACCAAAGCGCATTCTTGATCATATGGGACATACGTCCACACTTGATCTTCGGA 127 ************************************************************ consensus_5745#0 GAATACAATGGCTAGTAATAGATGAAGCTGATCGTTTGTTAGAAATGGGATTCGAACGAG 298 consensus_5745#1 GAATACAATGGCTAGTAATAGATGAAGCTGATCATTTGTTAGAAATGGGATTCGAACGAG 187 ********************************* ************************** consensus_5745#0 ATGTTAAACAGATTGTTGAAGGATTAATGCAGCAGTTCAATTGTTTTTCGACGGAAAATA 358 consensus_5745#1 ATGTTAAACAGATTGTTGAAGGATTAATGCAGCAGTTCAATTGTTTTTCGACGGAAAATA 247 ************************************************************ consensus_5745#0 AATCCATATCAAAAATTCAAACCGTTCTTTTATCAGCAACATTATCTCCGGGAGTGGAAG 418 consensus_5745#1 AATCCATATCAAAAATTCAAACCGTTCTTTTATCAGCAACATTATCTCCGGGTACGTT-- 305 **************************************************** * consensus_5745#0 CTCTTGCTGGTATAACTTTGAAGAATCCTGTGCGTTGCGTGGTTGGCGAAAGTGAAACAA 478 consensus_5745#1 TTCCTTCCA--------------------------------------------------- 314 ** * * consensus_5745#0 ACATTCCTAATACACAACTTTCTATGACGAAAGCCTCTGAAGTAGAGTTANATACACAAG 538 consensus_5745#1 ------------------------------------------------------------ consensus_5745#0 TAAATAATGTTGCTGAATTTGCTCTTCCTGCAGGGTTGAAACATTTTGCACTAATTGTTC 598 consensus_5745#1 ------------------------------------------------------------ consensus_5745#0 CTTGGAAACTGAGGCTTGTCTCATTGGCAGCTTTCTTATTACTTTAAATGTAATATC 655 consensus_5745#1 --------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||