cluster # 5745

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Schistosoma mansoni
cluster # 5745 cluster # 5745 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5745#0 length = 655 sequences # 2

consensus_5745#1 length = 314 sequences # 1

consensusID : consensus_5745#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 655
fasta sequence

                              [CGTAAAGATGGACCTTTAGGGATAATAATTCTTCCTTCAAGAGAATTAGCAACACAAACCTTTGATGTCTTCAAAATTCTGTCTCAAGCTTGCGTACGTATTGTTCCAGGATTGTTGGTTGGAGGGATGAAACGGAAATCACAGAAAGCAAGTCTAAGAAAGGGTATCAATATTCTAATTGGTACACCAAAGCGCATTCTTGATCATATGGGACATACGTCCACACTTGATCTTCGGAGAATACAATGGCTAGTAATAGATGAAGCTGATCGTTTGTTAGAAATGGGATTCGAACGAGATGTTAAACAGATTGTTGAAGGATTAATGCAGCAGTTCAATTGTTTTTCGACGGAAAATAAATCCATATCAAAAATTCAAACCGTTCTTTTATCAGCAACATTATCTCCGGGAGTGGAAGCTCTTGCTGGTATAACTTTGAAGAATCCTGTGCGTTGCGTGGTTGGCGAAAGTGAAACAAACATTCCTAATACACAACTTTCTATGACGAAAGCCTCTGAAGTAGAGTTANATACACAAGTAAATAATGTTGCTGAATTTGCTCTTCCTGCAGGGTTGAAACATTTTGCACTAATTGTTCCTTGGAAACTGAGGCTTGTCTCATTGGCAGCTTTCTTATTACTTTAAATGTAATATC]

[+] EMBL CD096735             [CGTAAAGATGGACCTTTAGGGATAATAATTCTTCCTTCAAGAGAATTAGCAACACAAACCTTTGATGTCTTCAAAATTCTGTCTCAAGCTTGCGTACGTATTGTTCCAGGATTGTTGGTTGGAGGGATGAAACGGAAATCACAGAAAGCAAGTCTAAGAAAGGGTATCAATATTCTAATTGGTACACCAAAGCGCATTCTTGATCATATGGGACATACGTCCACACTTGATCTTCGGAGAATACAATGGCTAGTAATAGATGAAGCTGATCGTTTGTTAGAAATGGGATTCGAACGAGATGTTAAACAGATTGTTGAA                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD181785             [                                                                                                                                                                                                                                                                                      AGAAATGGGATTCGAACGAGATGTTAAACAGATTGTTGAAGGATTAATGCAGCAGTTCAATTGTTTTTCGACGGAAAATAAATCCATATCAAAAATTCAAACCGTTCTTTTATCAGCAACATTATCTCCGGGAGTGGAAGCTCTTGCTGGTATAACTTTGAAGAATCCTGTGCGTTGCGTGGTTGGCGAAAGTGAAACAAACATTCCTAATACACAACTTTCTATGACGAAAGCCTCTGAAGTAGAGTTANATACACAAGTAAATAATGTTGCTGAATTTGCTCTTCCTGCAGGGTTGAAACATTTTGCACTAATTGTTCCTTGGAAACTGAGGCTTGTCTCATTGGCAGCTTTCTTATTACTTTAAATGTAATATC]




>consensus_5745#0
CGTAAAGATGGACCTTTAGGGATAATAATTCTTCCTTCAAGAGAATTAGCAACACAAACC
TTTGATGTCTTCAAAATTCTGTCTCAAGCTTGCGTACGTATTGTTCCAGGATTGTTGGTT
GGAGGGATGAAACGGAAATCACAGAAAGCAAGTCTAAGAAAGGGTATCAATATTCTAATT
GGTACACCAAAGCGCATTCTTGATCATATGGGACATACGTCCACACTTGATCTTCGGAGA
ATACAATGGCTAGTAATAGATGAAGCTGATCGTTTGTTAGAAATGGGATTCGAACGAGAT
GTTAAACAGATTGTTGAAGGATTAATGCAGCAGTTCAATTGTTTTTCGACGGAAAATAAA
TCCATATCAAAAATTCAAACCGTTCTTTTATCAGCAACATTATCTCCGGGAGTGGAAGCT
CTTGCTGGTATAACTTTGAAGAATCCTGTGCGTTGCGTGGTTGGCGAAAGTGAAACAAAC
ATTCCTAATACACAACTTTCTATGACGAAAGCCTCTGAAGTAGAGTTANATACACAAGTA
AATAATGTTGCTGAATTTGCTCTTCCTGCAGGGTTGAAACATTTTGCACTAATTGTTCCT
TGGAAACTGAGGCTTGTCTCATTGGCAGCTTTCTTATTACTTTAAATGTAATATC

consensusID : consensus_5745#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 314
fasta sequence

                              [GGCTGGTCTCATTCTCTTTACTAATTATTCCCTTGCAACAGTCTAAGAAAGGGTATCAATATTCTAATTGGTACACCAAAGCGCATTCTTGATCATATGGGACATACGTCCACACTTGATCTTCGGAGAATACAATGGCTAGTAATAGATGAAGCTGATCATTTGTTAGAAATGGGATTCGAACGAGATGTTAAACAGATTGTTGAAGGATTAATGCAGCAGTTCAATTGTTTTTCGACGGAAAATAAATCCATATCAAAAATTCAAACCGTTCTTTTATCAGCAACATTATCTCCGGGTACGTTTTCCTTCCA]

[-] EMBL CD177853             [GGCTGGTCTCATTCTCTTTACTAATTATTCCCTTGCAACAGTCTAAGAAAGGGTATCAATATTCTAATTGGTACACCAAAGCGCATTCTTGATCATATGGGACATACGTCCACACTTGATCTTCGGAGAATACAATGGCTAGTAATAGATGAAGCTGATCATTTGTTAGAAATGGGATTCGAACGAGATGTTAAACAGATTGTTGAAGGATTAATGCAGCAGTTCAATTGTTTTTCGACGGAAAATAAATCCATATCAAAAATTCAAACCGTTCTTTTATCAGCAACATTATCTCCGGGTACGTTTTCCTTCCA]




>consensus_5745#1
GGCTGGTCTCATTCTCTTTACTAATTATTCCCTTGCAACAGTCTAAGAAAGGGTATCAAT
ATTCTAATTGGTACACCAAAGCGCATTCTTGATCATATGGGACATACGTCCACACTTGAT
CTTCGGAGAATACAATGGCTAGTAATAGATGAAGCTGATCATTTGTTAGAAATGGGATTC
GAACGAGATGTTAAACAGATTGTTGAAGGATTAATGCAGCAGTTCAATTGTTTTTCGACG
GAAAATAAATCCATATCAAAAATTCAAACCGTTCTTTTATCAGCAACATTATCTCCGGGT
ACGTTTTCCTTCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5745#0      CGTAAAGATGGACCTTTAGGGATAATAATTCTTCCTTCAAGAGAATTAGCAACACAAACC 60
consensus_5745#1      ------------------------------------------------------------
                                                                                  

consensus_5745#0      TTTGATGTCTTCAAAATTCTGTCTCAAGCTTGCGTACGTATTGTTCCAGGATTGTTGGTT 120
consensus_5745#1      ----------------------------------------------------GGCTGGTC 8
                                                                           * **** 

consensus_5745#0      GGAGGGATGAAACGGA--AATCACAGAAAGCAAGTCTAAGAAAGGGTATCAATATTCTAA 178
consensus_5745#1      TCATTCTCTTTACTAATTATTCCCTTGCAACA-GTCTAAGAAAGGGTATCAATATTCTAA 67
                        *        **  *  * ** *    * ** ***************************

consensus_5745#0      TTGGTACACCAAAGCGCATTCTTGATCATATGGGACATACGTCCACACTTGATCTTCGGA 238
consensus_5745#1      TTGGTACACCAAAGCGCATTCTTGATCATATGGGACATACGTCCACACTTGATCTTCGGA 127
                      ************************************************************

consensus_5745#0      GAATACAATGGCTAGTAATAGATGAAGCTGATCGTTTGTTAGAAATGGGATTCGAACGAG 298
consensus_5745#1      GAATACAATGGCTAGTAATAGATGAAGCTGATCATTTGTTAGAAATGGGATTCGAACGAG 187
                      ********************************* **************************

consensus_5745#0      ATGTTAAACAGATTGTTGAAGGATTAATGCAGCAGTTCAATTGTTTTTCGACGGAAAATA 358
consensus_5745#1      ATGTTAAACAGATTGTTGAAGGATTAATGCAGCAGTTCAATTGTTTTTCGACGGAAAATA 247
                      ************************************************************

consensus_5745#0      AATCCATATCAAAAATTCAAACCGTTCTTTTATCAGCAACATTATCTCCGGGAGTGGAAG 418
consensus_5745#1      AATCCATATCAAAAATTCAAACCGTTCTTTTATCAGCAACATTATCTCCGGGTACGTT-- 305
                      ****************************************************   *    

consensus_5745#0      CTCTTGCTGGTATAACTTTGAAGAATCCTGTGCGTTGCGTGGTTGGCGAAAGTGAAACAA 478
consensus_5745#1      TTCCTTCCA--------------------------------------------------- 314
                       ** * *                                                     

consensus_5745#0      ACATTCCTAATACACAACTTTCTATGACGAAAGCCTCTGAAGTAGAGTTANATACACAAG 538
consensus_5745#1      ------------------------------------------------------------
                                                                                  

consensus_5745#0      TAAATAATGTTGCTGAATTTGCTCTTCCTGCAGGGTTGAAACATTTTGCACTAATTGTTC 598
consensus_5745#1      ------------------------------------------------------------
                                                                                  

consensus_5745#0      CTTGGAAACTGAGGCTTGTCTCATTGGCAGCTTTCTTATTACTTTAAATGTAATATC 655
consensus_5745#1      ---------------------------------------------------------