cluster # 5757

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Schistosoma mansoni
cluster # 5757 cluster # 5757 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5757#0 length = 357 sequences # 2

consensus_5757#1 length = 350 sequences # 1

consensusID : consensus_5757#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 357
fasta sequence

                              [AAGCCTATAGTAGGTAAGGATCTTCTATTCTCACCTCTTCTTCAACCAATGGACCATGTTGACAAAGCTCTGTCTTCCTATTGATCAGCATGGCACGTTGTCTAGTTCGACGACCAACACCACAAGTAACTGAACACGACCCCCAGTCTGACCAAGAATTTGTAATACATAGAAATAAAGCCATCTGTGCCAAAGTTGGATCTGACAGAGGATTATCCCCACCTAGTCCTCCACTTGTAATTCTTGTTCCTCCTGCTCCACCACCACCAACTTTGTTTCGAGATTTTTTCGGTAGTGCACCTGTCAAATCCCCTACAACTGACTGAACTATAGGAGAATGTTTATTAGATTGATTTC]

[+] EMBL CD127915             [AAGCCTATAGTAGGTAAGGATCTTCTATTCTCACCTCTTCTTCAACCAATGGACCATGTTGACAAAGCTCTGTCTTCCTATTGATCAGCATGGCACGTTGTCTAGTTCGACGACCAACACCACAAGTAACTGAACACGACCCCCAGTCTGACCAAGAATTTGTAATACATAGAAATAAAGCCATCTGTGCCAAAGTTGGATCTGACAGAGGATTATCCCCACCTAGTCCTCCACTTGTAATTCTTGTTCCTCCTGCTCCACCACCACCAACTTTGTTTCGAGATTTTTTCGGTAGTGCACCTGTCAAATCCCCTACAACTGACTGAACTATAGGAGAATGTTTATTAGATTGATTTC]
[-] EMBL CD183944             [                                                                                                                                                                                                 AGTTGGATCTGACAGAGGATTATCCCCACCTAGTCCTCCACTTGTAATTCTTGTTCCTCCTGCTCCACCACCACCAACTTTGTTTCGAGATTTTTTCGGTAGTGCACCTGTCAAATCCCCTACAACTGACTGAACTATAGGAGAATGTTTATTAGA        ]




>consensus_5757#0
AAGCCTATAGTAGGTAAGGATCTTCTATTCTCACCTCTTCTTCAACCAATGGACCATGTT
GACAAAGCTCTGTCTTCCTATTGATCAGCATGGCACGTTGTCTAGTTCGACGACCAACAC
CACAAGTAACTGAACACGACCCCCAGTCTGACCAAGAATTTGTAATACATAGAAATAAAG
CCATCTGTGCCAAAGTTGGATCTGACAGAGGATTATCCCCACCTAGTCCTCCACTTGTAA
TTCTTGTTCCTCCTGCTCCACCACCACCAACTTTGTTTCGAGATTTTTTCGGTAGTGCAC
CTGTCAAATCCCCTACAACTGACTGAACTATAGGAGAATGTTTATTAGATTGATTTC

consensusID : consensus_5757#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 350
fasta sequence

                              [ATCACAATCTGTTTCTTTTGGCTGACATTCCCTCATTTCCCGTAACACGCCATTATTTGACTCAGTTTCACTTTGAAATATGTGCTCACAATAATTCTTTTCTGATGAGCGGGCTAAATAACGTGTACGTGTTTGCCAGCCATGCGGTTGATCGCAAGTAGCATTGCATGGGGTCCAAGCAGTCCATGGTAATAAGCTGCACATAGCACTGAAATCACATGTGCGTTTTATACCATCACATGACTCTTCTTCAACCAATGGAACATGTTGACAAAGCTCTGTCTTCCTATTGATCAGCATGGCACGTTGTCTAGTTCGACGACCAACACCACAAGTAACTGAACACGAGA]

[+] EMBL BG931373             [ATCACAATCTGTTTCTTTTGGCTGACATTCCCTCATTTCCCGTAACACGCCATTATTTGACTCAGTTTCACTTTGAAATATGTGCTCACAATAATTCTTTTCTGATGAGCGGGCTAAATAACGTGTACGTGTTTGCCAGCCATGCGGTTGATCGCAAGTAGCATTGCATGGGGTCCAAGCAGTCCATGGTAATAAGCTGCACATAGCACTGAAATCACATGTGCGTTTTATACCATCACATGACTCTTCTTCAACCAATGGAACATGTTGACAAAGCTCTGTCTTCCTATTGATCAGCATGGCACGTTGTCTAGTTCGACGACCAACACCACAAGTAACTGAACACGAGA]




>consensus_5757#1
ATCACAATCTGTTTCTTTTGGCTGACATTCCCTCATTTCCCGTAACACGCCATTATTTGA
CTCAGTTTCACTTTGAAATATGTGCTCACAATAATTCTTTTCTGATGAGCGGGCTAAATA
ACGTGTACGTGTTTGCCAGCCATGCGGTTGATCGCAAGTAGCATTGCATGGGGTCCAAGC
AGTCCATGGTAATAAGCTGCACATAGCACTGAAATCACATGTGCGTTTTATACCATCACA
TGACTCTTCTTCAACCAATGGAACATGTTGACAAAGCTCTGTCTTCCTATTGATCAGCAT
GGCACGTTGTCTAGTTCGACGACCAACACCACAAGTAACTGAACACGAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5757#0      AAGCCTATAGTAGGTAAGGATCTTCTATTCTCACCTCTTCTTCAACCAATGGACCATG-- 58
consensus_5757#1      ---ATCACAATCTGTTTCTTTTGGCTGACATTCCCTCATTTCCCGT-AACACGCCATTAT 56
                            * * *  **     *   **    *  **** * * *    **    ****   

consensus_5757#0      TTGACAAAGCTCTGTCTTCCTATTGATCAGCATGGCACGTTGTCTA-GTTCGACGACCAA 117
consensus_5757#1      TTGACTCAGTTTCACTTTGAAATATGTGCTCACAATAATTCTTTTCTGATGAGCGGGCTA 116
                      *****  ** *     **   **   *   **    *  *  * *  * *   **  * *

consensus_5757#0      CACCACAAGTAACTGAACACGACCCCCA-GTCTGACCAAGAATTTGTAATACATAGAAAT 176
consensus_5757#1      AATAACGTGTACGTGTTTGCCAGCCATGCGGTTGATCGCAAGTA-GCATTGCATGGGGTC 175
                       *  **  ***  **    * * **    *  *** *   * *  * * * *** *    

consensus_5757#0      AAAGCCATCTGTGCCAA--AGTTGGATCTGACAGAGGA-TTATCCCCACCTAGTCCTCCA 233
consensus_5757#1      CAAGCAGTCCATGGTAATAAGCTGCACATAGCACTGAAATCACATGTGCGTTTTATACCA 235
                       ****  **  **  **  ** ** *  *  **  * * * *      * *  *   ***

consensus_5757#0      CT-TGTAATTCTTGTTCCTCC--TGCTCCACCACCACCAA-CTTTGTTTCGAGATTTTTT 289
consensus_5757#1      TCACATGACTCTTCTTCAACCAATGGAACATGTTGACAAAGCTCTGTCTTCCTATTGAT- 294
                           * * **** ***  **  **   **     ** ** ** *** *    ***  * 

consensus_5757#0      CGGTAGTGCAC-CTGTCAAATCCCCTACAACTGACTGAACTATAGGAGAATGTTTATTAG 348
consensus_5757#1      CAGCATGGCACGTTGTCTAGTTCG--ACGACCAAC---ACCACAAGTAACTGAACACGAG 349
                      * * *  ****  **** * * *   ** **  **   ** * * *  * **   *  **

consensus_5757#0      ATTGATTTC 357
consensus_5757#1      A-------- 350
                      *