cluster # 5760

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Schistosoma mansoni
cluster # 5760 cluster # 5760 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5760#0 length = 526 sequences # 2

consensus_5760#1 length = 477 sequences # 1

consensusID : consensus_5760#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 526
fasta sequence

                              [CAACACTGTTGTTACCCACATCCCTACCGCGTTTTCTACTTTTTGTGTTCAGGGATGTGCTAAGAACTATCACATTCAGGTTGGCTCAAGTTTGAATCTGGGGGTGGATGATTACGTGTTTCTAACCTGTGAAAAGTGCATGTATTCAACCCGTTTTATTCCACACTCGTATA-TTAGTCTCCCTGTTAACACTCAGTGAAAATTTATCTTAATATGGAAGTAGATAAATACACGTTAATCGTCCGGAATTTGCAGGAGGTAGTACGTGATGATGAACTTCAAAATCTTTTAAAGAAACCAAATTCATCACTGTCTGTGTATTGGGGTACTGCAACAACTGGTAGACCTCATATAGCATACTTTGTTCCAATTATTAAGCTGGCTGATATGCTGAAAACCGGTGCAAATATCACTGTACTCTTTGCTGACTTACACGCATATCTAGATAATATGAATGCTCCATGGTCTTTGCTTTGTCTTCGTACAAAATATTATGAAGCTGTTATAAAAGGAATGTTCCGTTCAA]

[+] EMBL AI067915             [CAACACTGTTGTTACCCACATCCCTACCGCGTTTTCTACTTTTTGTGTTCAGGGATGTGCTAAGAACTATCACATTCAGGTTGGCTCAAGTTTGAATCTGGGGGTGGATGATTACGTGTTTCTAACCTGTGAAAAGTGCATGTATTCAACCCGTTTTATTCCACACTCGTATA TTAGTCTCCCTGTTAACACTCAGTGAAAATTTATCTTAATATGGAAGTAGATAAATACACGTTAATCGTCCGGAATTTGCAGGAGGTAGTACGTGATGATGAACTTCAAAATCTTTTAAAGAAACCAAATTCATCACTGTCTGTGTATTGGGGTACTGCAACAACTGGTAGACCTCATATAGCATACTTTGTTCCAATTATTAAGCTGGCTGATATGCTGAAAACCGGTGCAAATATCACTGTACTCTTTGCTGACTTACACGCATATCTAGATAATATGAATGCTCCATGGTCTTTGCTTTGTCTTCGTACAAAATATTATGAAGCTGTTATAAAAGGAATGTTCCGTTCAA]
[-] EMBL CD064090             [                                                                                        AGTTTGAATCTGGGGGTGGATGATTACGTGTTTCTAACCTGTGAAAAGTGCATGTATTCAACCCGTTTTATTCCACACTCGTATANTTAGTCTCCCTGTTcta                                                                                                                                                                                                                                                                                                                                                ]




>consensus_5760#0
CAACACTGTTGTTACCCACATCCCTACCGCGTTTTCTACTTTTTGTGTTCAGGGATGTGC
TAAGAACTATCACATTCAGGTTGGCTCAAGTTTGAATCTGGGGGTGGATGATTACGTGTT
TCTAACCTGTGAAAAGTGCATGTATTCAACCCGTTTTATTCCACACTCGTATATTAGTCT
CCCTGTTAACACTCAGTGAAAATTTATCTTAATATGGAAGTAGATAAATACACGTTAATC
GTCCGGAATTTGCAGGAGGTAGTACGTGATGATGAACTTCAAAATCTTTTAAAGAAACCA
AATTCATCACTGTCTGTGTATTGGGGTACTGCAACAACTGGTAGACCTCATATAGCATAC
TTTGTTCCAATTATTAAGCTGGCTGATATGCTGAAAACCGGTGCAAATATCACTGTACTC
TTTGCTGACTTACACGCATATCTAGATAATATGAATGCTCCATGGTCTTTGCTTTGTCTT
CGTACAAAATATTATGAAGCTGTTATAAAAGGAATGTTCCGTTCAA

consensusID : consensus_5760#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 477
fasta sequence

                              [ACTCTTGTGATTTGTTGCATGGATGATTACGTGTTTCTAACCTGTGAAAAGTGCATGTATTCAACCCGTTTTATTCCACACTCGTATATTAGTCTCCCTGTTAACACTCAGTGAAAATTTATCTTAATATGGAAGTAGATAAATACACGTTAATCGTCCGGAATTTGCAGGAGGTAGTAGGTGATGATGAACTTCAAAATCTTTTAAAGAAACCAAATTCATCAGTGTCTGTGTATTGGGGTACTGCAACAACTGGTAGACCTCATATAGCATACTTTGTTCCAATTATTAAGCTGGCTGATATGCTGAAAACCGGTGCAAAAGTCACTGTACTCTTTGCTGACTTACACGCATATCTAGATAATATGAAGGCTCCATGGTCTTTGCTTTGTCTTCGTACAAAATATTATGAAGCTGTTATAAAAGGAATGTTCCGTTCAATTTGTGTCCCATTAGACCGGGTACATTTTGTACGTG]

[+] EMBL CD114648             [ACTCTTGTGATTTGTTGCATGGATGATTACGTGTTTCTAACCTGTGAAAAGTGCATGTATTCAACCCGTTTTATTCCACACTCGTATATTAGTCTCCCTGTTAACACTCAGTGAAAATTTATCTTAATATGGAAGTAGATAAATACACGTTAATCGTCCGGAATTTGCAGGAGGTAGTAGGTGATGATGAACTTCAAAATCTTTTAAAGAAACCAAATTCATCAGTGTCTGTGTATTGGGGTACTGCAACAACTGGTAGACCTCATATAGCATACTTTGTTCCAATTATTAAGCTGGCTGATATGCTGAAAACCGGTGCAAAAGTCACTGTACTCTTTGCTGACTTACACGCATATCTAGATAATATGAAGGCTCCATGGTCTTTGCTTTGTCTTCGTACAAAATATTATGAAGCTGTTATAAAAGGAATGTTCCGTTCAATTTGTGTCCCATTAGACCGGGTACATTTTGTACGTG]




>consensus_5760#1
ACTCTTGTGATTTGTTGCATGGATGATTACGTGTTTCTAACCTGTGAAAAGTGCATGTAT
TCAACCCGTTTTATTCCACACTCGTATATTAGTCTCCCTGTTAACACTCAGTGAAAATTT
ATCTTAATATGGAAGTAGATAAATACACGTTAATCGTCCGGAATTTGCAGGAGGTAGTAG
GTGATGATGAACTTCAAAATCTTTTAAAGAAACCAAATTCATCAGTGTCTGTGTATTGGG
GTACTGCAACAACTGGTAGACCTCATATAGCATACTTTGTTCCAATTATTAAGCTGGCTG
ATATGCTGAAAACCGGTGCAAAAGTCACTGTACTCTTTGCTGACTTACACGCATATCTAG
ATAATATGAAGGCTCCATGGTCTTTGCTTTGTCTTCGTACAAAATATTATGAAGCTGTTA
TAAAAGGAATGTTCCGTTCAATTTGTGTCCCATTAGACCGGGTACATTTTGTACGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5760#0      CAACACTGTTGTTACCCACATCCCTACCGCGTTTTCTACTTTTTGTGTTCAGGGATGTGC 60
consensus_5760#1      ------------------------------------------------------------
                                                                                  

consensus_5760#0      TAAGAACTATCACATTCAGGTTGGCTCAAGTTTGAATCTGGGGGTGGATGATTACGTGTT 120
consensus_5760#1      -----------------------ACTC--TTGTGATTTGTTGCATGGATGATTACGTGTT 35
                                              ***   * *** *    *  ****************

consensus_5760#0      TCTAACCTGTGAAAAGTGCATGTATTCAACCCGTTTTATTCCACACTCGTATATTAGTCT 180
consensus_5760#1      TCTAACCTGTGAAAAGTGCATGTATTCAACCCGTTTTATTCCACACTCGTATATTAGTCT 95
                      ************************************************************

consensus_5760#0      CCCTGTTAACACTCAGTGAAAATTTATCTTAATATGGAAGTAGATAAATACACGTTAATC 240
consensus_5760#1      CCCTGTTAACACTCAGTGAAAATTTATCTTAATATGGAAGTAGATAAATACACGTTAATC 155
                      ************************************************************

consensus_5760#0      GTCCGGAATTTGCAGGAGGTAGTACGTGATGATGAACTTCAAAATCTTTTAAAGAAACCA 300
consensus_5760#1      GTCCGGAATTTGCAGGAGGTAGTAGGTGATGATGAACTTCAAAATCTTTTAAAGAAACCA 215
                      ************************ ***********************************

consensus_5760#0      AATTCATCACTGTCTGTGTATTGGGGTACTGCAACAACTGGTAGACCTCATATAGCATAC 360
consensus_5760#1      AATTCATCAGTGTCTGTGTATTGGGGTACTGCAACAACTGGTAGACCTCATATAGCATAC 275
                      ********* **************************************************

consensus_5760#0      TTTGTTCCAATTATTAAGCTGGCTGATATGCTGAAAACCGGTGCAAATATCACTGTACTC 420
consensus_5760#1      TTTGTTCCAATTATTAAGCTGGCTGATATGCTGAAAACCGGTGCAAAAGTCACTGTACTC 335
                      ***********************************************  ***********

consensus_5760#0      TTTGCTGACTTACACGCATATCTAGATAATATGAATGCTCCATGGTCTTTGCTTTGTCTT 480
consensus_5760#1      TTTGCTGACTTACACGCATATCTAGATAATATGAAGGCTCCATGGTCTTTGCTTTGTCTT 395
                      *********************************** ************************

consensus_5760#0      CGTACAAAATATTATGAAGCTGTTATAAAAGGAATGTTCCGTTCAA-------------- 526
consensus_5760#1      CGTACAAAATATTATGAAGCTGTTATAAAAGGAATGTTCCGTTCAATTTGTGTCCCATTA 455
                      **********************************************              

consensus_5760#0      ----------------------
consensus_5760#1      GACCGGGTACATTTTGTACGTG 477