These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5764#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence [CTATTAAGACATCCATCTCAATCACCTCAAACAACAAATCTACCGCCATTCTCATCGAAAATATTTCTTCAGCATTCTAATACTGTGTCATCAACTCCTGTAGATATAATGAAATATGAATGTTTAAACAATGATTCAGATAAATTACCAATGAATTCATCTGATAAAATGATATTTAATACGAAATGTATTAATAACGCAAATAACAAACGTAATGATAATTTTATCGCATCATTCTCATTGACATCAGTAAATAATTCTACTGGATGGTCGACAGAAGCAATTAATAGCTTATCGTGCGATACAAGAGATATATTAGCACGATCCCATTCAGTTGGATATCATCAAGATACTTCTATTACTACATCATTATCTACAATAGGACCAGAAGTAACAATGACAACATCATGCTCTATCAATCGTAC] [+] EMBL CD154163 [CTATTAAGACATCCATCTCAATCACCTCAAACAACAAATCTACCGCCATTCTCATCGAAAATATTTCTTCAGCATTCTAATACTGTGTCATCAACTCCTGTAGATATAATGAAATATGAATGTTTAAACAATGATTCAGATAAATTACCAATGAATTCATCTGATAAAATGATATTTAATACGAAATGTATTAATAACGCAAATAACAAACGTAATGATAATTTTATCGCATCATTCTCATTGACATCAGTAAATAATTCTACTGGATGGTCGACAGAAGCAATTAATAGCTTATCGTGCGATACAAGAGATATATTAGCACGATCCCATTCAGTTGGATATCATCAAGATACTTCTATTACTACATCATTATCTACAATAGGACCAGAAGTAACAATGACAACATCATGCTCTATCAATCGTAC] consensusID : consensus_5764#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 387 fasta sequence [CATCAAGATACTTCTATTACTACATCATTATCTACAATAGGACCATTCAGCAACTCACACTCACGATTCCATCATTGGGGGTCGAACTCATAACATTCGCTTTTACACACGAATACTCAGCCTCTACACCACTGATTCGGCATCCACTGGTACACATGCCTAACTTCAATCAGTACATGATATTGTTCAACGAACGTCCAGTGTTTCCAGATTTTCAATGGTGGTTTAGGTAAGGTTAGTTCATGATTGTAACTATAAAAATCCTACAATCTTTACATGGTAATAATAATTATCTCAGTAGTGACTGGCTTTAAGATGCAACTCCCGGAGTTTACTGAAAAACCGTGACCAGTAGAGTTCAGTCATGTTTGATGTGAGACAGTTATC] [+] EMBL CD064106 [CATCAAGATACTTCTATTACTACATCATTATCTACAATAGGACCATTCAGCAACTCACACTCACGATTCCATCATTGGGGGTCGAACTCATAACATTCGCTTTTACACACGAATACTCAGCCTCTACACCACTGATTCGGCATCCACTGGTACACATGCCTAACTTCAATCAGTACATGATATTGTTCAACGAACGTCCAGTGTTTCCAGATTTTCAATGGTGGTTTAGGTAAGGTTAGTTCATGATTGTAACTATAAAAATCCTACAATCTTTACATGGTAATAATAATTATCTCAGTAGTGACTGGCTTTAAGATGCAACTCCCGGAGTTTACTGAAAAACCGTGACCAGTAGAGTTCAGTCATGTTTGATGTGAGACAGTTATC] consensusID : consensus_5764#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 144 fasta sequence [TCTACCAGCGGATGCCGAATCAGTGGTGTACAGGCTGAGTATTCGTGTGTTACAGCGAATGTTATGAGTTCGACCCCCAATGATGGAATCGTGAGTGTGAGTTGCTGAATAGTCCCGTGCCATGACGAATCGGACGTCCCGTGC] [+] EMBL CD085957 [TCTACCAGCGGATGCCGAATCAGTGGTGTACAGGCTGAGTATTCGTGTGTTACAGCGAATGTTATGAGTTCGACCCCCAATGATGGAATCGTGAGTGTGAGTTGCTGAATAGTCCCGTGCCATGACGAATCGGACGTCCCGTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5764#0 ----------------------------CTATTAAGACATCCATCTCAATCACCTCAAAC 32 consensus_5764#2 ---------------------------------------------TCTACCAGC--GGAT 13 consensus_5764#1 CATCAAGATACTTCTATTACTACATCATTATCTACAATAGGACCATTCAGCAACTCACAC 60 * * ** * * consensus_5764#0 AA-CAAATCT---ACCGCCATTCTCATCGAAAATATTTC-TTCAGCATTCTAATACTGTG 87 consensus_5764#2 GC-CGAATC----AGTGGTGTACAGGCTGAGTATTCGTG-TGTTACAG-CGAATGTTATG 66 consensus_5764#1 TCACGATTCCATCATTGGGGGTCGAACTCATAACATTCGCTTTTACACACGAATACTCAG 120 * * ** * * * * * * ** * *** * * consensus_5764#0 TCATCA-ACTCCTGTAG----ATATAATGAAATATGAATGTTTAAACAATGATTCAGATA 142 consensus_5764#2 AGTTCG-ACCCCCAATG----ATGGAATCGTGAGTGTGAGTT-GCTGAATAGTCCCGTGC 120 consensus_5764#1 CCTCTACACCACTGATTCGGCATCCACTGGTACACATGCCTAACTTCAATCAGTACATGA 180 ** * ** * * * *** consensus_5764#0 AATTACCAATGAATTCATCTGATAAAATGATATTTAATACGAAATGTATTAATAACGCAA 202 consensus_5764#2 CATGACGAATCGGA-CGTCCCGTGC----------------------------------- 144 consensus_5764#1 TATTGTTCAACGAA-CGTCCAGTGTTTCCAGATTTTCAATGGTGGTTTAGGTAAGGTTAG 239 ** * * ** * consensus_5764#0 ATAACAAACGTAATGATAATTTTATCGCATCATTCTCATTGACATCAGTAAATAATTC-- 260 consensus_5764#2 ------------------------------------------------------------ consensus_5764#1 TTCATGATTGTAACTATAAAAATCCTACAATCTTTACAT-GGTAATAATAATTATCTCAG 298 consensus_5764#0 TACTGGATGGTCGACAGAAGCAATTAATAGCTTATCGTGCGATACAAGAGATATATTAGC 320 consensus_5764#2 ------------------------------------------------------------ consensus_5764#1 TAGTGACTGGCTTTAAGATGCAACTCCCGGAGTTTACTGAAAAACCGTGACCAGTAGAGT 358 consensus_5764#0 ACGATCCCATTCAGTTGGATATCATCAAGATACTTCTATTACTACATCATTATCTACAAT 380 consensus_5764#2 ------------------------------------------------------------ consensus_5764#1 TCAGTCATGTTTGATGTGAGACAGTTATC------------------------------- 387 consensus_5764#0 AGGACCAGAAGTAACAATGACAACATCATGCTCTATCAATCGTAC 425 consensus_5764#2 --------------------------------------------- consensus_5764#1 --------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||