cluster # 5764

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Schistosoma mansoni
cluster # 5764 cluster # 5764 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5764#0 length = 425 sequences # 1

consensus_5764#1 length = 387 sequences # 1
consensus_5764#2 length = 144 sequences # 1

consensusID : consensus_5764#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 425
fasta sequence

                              [CTATTAAGACATCCATCTCAATCACCTCAAACAACAAATCTACCGCCATTCTCATCGAAAATATTTCTTCAGCATTCTAATACTGTGTCATCAACTCCTGTAGATATAATGAAATATGAATGTTTAAACAATGATTCAGATAAATTACCAATGAATTCATCTGATAAAATGATATTTAATACGAAATGTATTAATAACGCAAATAACAAACGTAATGATAATTTTATCGCATCATTCTCATTGACATCAGTAAATAATTCTACTGGATGGTCGACAGAAGCAATTAATAGCTTATCGTGCGATACAAGAGATATATTAGCACGATCCCATTCAGTTGGATATCATCAAGATACTTCTATTACTACATCATTATCTACAATAGGACCAGAAGTAACAATGACAACATCATGCTCTATCAATCGTAC]

[+] EMBL CD154163             [CTATTAAGACATCCATCTCAATCACCTCAAACAACAAATCTACCGCCATTCTCATCGAAAATATTTCTTCAGCATTCTAATACTGTGTCATCAACTCCTGTAGATATAATGAAATATGAATGTTTAAACAATGATTCAGATAAATTACCAATGAATTCATCTGATAAAATGATATTTAATACGAAATGTATTAATAACGCAAATAACAAACGTAATGATAATTTTATCGCATCATTCTCATTGACATCAGTAAATAATTCTACTGGATGGTCGACAGAAGCAATTAATAGCTTATCGTGCGATACAAGAGATATATTAGCACGATCCCATTCAGTTGGATATCATCAAGATACTTCTATTACTACATCATTATCTACAATAGGACCAGAAGTAACAATGACAACATCATGCTCTATCAATCGTAC]




>consensus_5764#0
CTATTAAGACATCCATCTCAATCACCTCAAACAACAAATCTACCGCCATTCTCATCGAAA
ATATTTCTTCAGCATTCTAATACTGTGTCATCAACTCCTGTAGATATAATGAAATATGAA
TGTTTAAACAATGATTCAGATAAATTACCAATGAATTCATCTGATAAAATGATATTTAAT
ACGAAATGTATTAATAACGCAAATAACAAACGTAATGATAATTTTATCGCATCATTCTCA
TTGACATCAGTAAATAATTCTACTGGATGGTCGACAGAAGCAATTAATAGCTTATCGTGC
GATACAAGAGATATATTAGCACGATCCCATTCAGTTGGATATCATCAAGATACTTCTATT
ACTACATCATTATCTACAATAGGACCAGAAGTAACAATGACAACATCATGCTCTATCAAT
CGTAC

consensusID : consensus_5764#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 387
fasta sequence

                              [CATCAAGATACTTCTATTACTACATCATTATCTACAATAGGACCATTCAGCAACTCACACTCACGATTCCATCATTGGGGGTCGAACTCATAACATTCGCTTTTACACACGAATACTCAGCCTCTACACCACTGATTCGGCATCCACTGGTACACATGCCTAACTTCAATCAGTACATGATATTGTTCAACGAACGTCCAGTGTTTCCAGATTTTCAATGGTGGTTTAGGTAAGGTTAGTTCATGATTGTAACTATAAAAATCCTACAATCTTTACATGGTAATAATAATTATCTCAGTAGTGACTGGCTTTAAGATGCAACTCCCGGAGTTTACTGAAAAACCGTGACCAGTAGAGTTCAGTCATGTTTGATGTGAGACAGTTATC]

[+] EMBL CD064106             [CATCAAGATACTTCTATTACTACATCATTATCTACAATAGGACCATTCAGCAACTCACACTCACGATTCCATCATTGGGGGTCGAACTCATAACATTCGCTTTTACACACGAATACTCAGCCTCTACACCACTGATTCGGCATCCACTGGTACACATGCCTAACTTCAATCAGTACATGATATTGTTCAACGAACGTCCAGTGTTTCCAGATTTTCAATGGTGGTTTAGGTAAGGTTAGTTCATGATTGTAACTATAAAAATCCTACAATCTTTACATGGTAATAATAATTATCTCAGTAGTGACTGGCTTTAAGATGCAACTCCCGGAGTTTACTGAAAAACCGTGACCAGTAGAGTTCAGTCATGTTTGATGTGAGACAGTTATC]




>consensus_5764#1
CATCAAGATACTTCTATTACTACATCATTATCTACAATAGGACCATTCAGCAACTCACAC
TCACGATTCCATCATTGGGGGTCGAACTCATAACATTCGCTTTTACACACGAATACTCAG
CCTCTACACCACTGATTCGGCATCCACTGGTACACATGCCTAACTTCAATCAGTACATGA
TATTGTTCAACGAACGTCCAGTGTTTCCAGATTTTCAATGGTGGTTTAGGTAAGGTTAGT
TCATGATTGTAACTATAAAAATCCTACAATCTTTACATGGTAATAATAATTATCTCAGTA
GTGACTGGCTTTAAGATGCAACTCCCGGAGTTTACTGAAAAACCGTGACCAGTAGAGTTC
AGTCATGTTTGATGTGAGACAGTTATC

consensusID : consensus_5764#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 144
fasta sequence

                              [TCTACCAGCGGATGCCGAATCAGTGGTGTACAGGCTGAGTATTCGTGTGTTACAGCGAATGTTATGAGTTCGACCCCCAATGATGGAATCGTGAGTGTGAGTTGCTGAATAGTCCCGTGCCATGACGAATCGGACGTCCCGTGC]

[+] EMBL CD085957             [TCTACCAGCGGATGCCGAATCAGTGGTGTACAGGCTGAGTATTCGTGTGTTACAGCGAATGTTATGAGTTCGACCCCCAATGATGGAATCGTGAGTGTGAGTTGCTGAATAGTCCCGTGCCATGACGAATCGGACGTCCCGTGC]




>consensus_5764#2
TCTACCAGCGGATGCCGAATCAGTGGTGTACAGGCTGAGTATTCGTGTGTTACAGCGAAT
GTTATGAGTTCGACCCCCAATGATGGAATCGTGAGTGTGAGTTGCTGAATAGTCCCGTGC
CATGACGAATCGGACGTCCCGTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5764#0      ----------------------------CTATTAAGACATCCATCTCAATCACCTCAAAC 32
consensus_5764#2      ---------------------------------------------TCTACCAGC--GGAT 13
consensus_5764#1      CATCAAGATACTTCTATTACTACATCATTATCTACAATAGGACCATTCAGCAACTCACAC 60
                                                                   *  * ** *    * 

consensus_5764#0      AA-CAAATCT---ACCGCCATTCTCATCGAAAATATTTC-TTCAGCATTCTAATACTGTG 87
consensus_5764#2      GC-CGAATC----AGTGGTGTACAGGCTGAGTATTCGTG-TGTTACAG-CGAATGTTATG 66
consensus_5764#1      TCACGATTCCATCATTGGGGGTCGAACTCATAACATTCGCTTTTACACACGAATACTCAG 120
                         * * **    *  *     *      *  *       *    **  * ***  *  *

consensus_5764#0      TCATCA-ACTCCTGTAG----ATATAATGAAATATGAATGTTTAAACAATGATTCAGATA 142
consensus_5764#2      AGTTCG-ACCCCCAATG----ATGGAATCGTGAGTGTGAGTT-GCTGAATAGTCCCGTGC 120
consensus_5764#1      CCTCTACACCACTGATTCGGCATCCACTGGTACACATGCCTAACTTCAATCAGTACATGA 180
                             **  *         **  * *            *      ***          

consensus_5764#0      AATTACCAATGAATTCATCTGATAAAATGATATTTAATACGAAATGTATTAATAACGCAA 202
consensus_5764#2      CATGACGAATCGGA-CGTCCCGTGC----------------------------------- 144
consensus_5764#1      TATTGTTCAACGAA-CGTCCAGTGTTTCCAGATTTTCAATGGTGGTTTAGGTAAGGTTAG 239
                       **     *      * **   *                                     

consensus_5764#0      ATAACAAACGTAATGATAATTTTATCGCATCATTCTCATTGACATCAGTAAATAATTC-- 260
consensus_5764#2      ------------------------------------------------------------
consensus_5764#1      TTCATGATTGTAACTATAAAAATCCTACAATCTTTACAT-GGTAATAATAATTATCTCAG 298
                                                                                  

consensus_5764#0      TACTGGATGGTCGACAGAAGCAATTAATAGCTTATCGTGCGATACAAGAGATATATTAGC 320
consensus_5764#2      ------------------------------------------------------------
consensus_5764#1      TAGTGACTGGCTTTAAGATGCAACTCCCGGAGTTTACTGAAAAACCGTGACCAGTAGAGT 358
                                                                                  

consensus_5764#0      ACGATCCCATTCAGTTGGATATCATCAAGATACTTCTATTACTACATCATTATCTACAAT 380
consensus_5764#2      ------------------------------------------------------------
consensus_5764#1      TCAGTCATGTTTGATGTGAGACAGTTATC------------------------------- 387
                                                                                  

consensus_5764#0      AGGACCAGAAGTAACAATGACAACATCATGCTCTATCAATCGTAC 425
consensus_5764#2      ---------------------------------------------
consensus_5764#1      ---------------------------------------------