cluster # 5765

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Schistosoma mansoni
cluster # 5765 cluster # 5765 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5765#0 length = 981 sequences # 1

consensus_5765#1 length = 595 sequences # 1
consensus_5765#2 length = 359 sequences # 1

consensusID : consensus_5765#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 981
fasta sequence

                              [CCTCGAGGCCAAAAATTCGGCACGAGGTTTATGCTACTCGTGTAAAAACTACTTCACAATCTGAAATGTTCAATAAATTACAATTAACTAGTAAAGAAGTATGCAAGTGTACTGGAAATTTAATTGCATGTGTAAAAAAGGCAATTGAAGCAAAACATATAGAAGAACTTGATTTTAGTAGTCTTACATTAACTCAAGCAAAACGTATGGAAGTTGAACTACAAGTGAAAATTATTGAATTAGAAACATCGTTAACAAATGAACGACAACGTTTAGCTCAATTAAGAAGAGATAATTATCAGTTATCAGCTGAAGTAGAGTTGATCAACGAGAGATAATGAGAAACTCCCAATGAACGTTTAACAAATAAAGCAGTCTACAAATCTCAAATCTACCTTCCAAATTAAATGTAAATAGATTTATTTCAACAGCTTATCTACCTACGTTATTCTCACCAAAATTTGTTATCTTGCTACTATTACCACAATCGTTACTACCACTCCAGTAATCAGTTAGTATGCATACCTAAGTCTTTCATTATTCAAAATAACTCTCCCTATTATTGTGTGCATCAGCGGCACAAGGAAGAGTGACACAAAATCATATATTCAACTTTATACTTGATTNTCATCATTNTGTTCTTGCATGATCTCATATTGATTATTTAGTGATATGACGTTTGTTTTCTTTCTACCTAGAGAATGGAACATTGCTTTNTATTTCGACTTCGTTCCGTTATTCTCTCTTTCTTTCTCTAGAAAATAAAATAAGAAATACTCCCTCTACCTTNCTACTGNNCTGTCATATTGTGNGCCCTTAATCCCAANGCTATTGACATATGATNNTCACCNGTATACACGTCTTGCNGACTGCTGAACTTTCCGGNTATTTACAGATGAGTTCATCTCTTTAGCATCATAATATTNGGACGACANNATAGATGGGGGATNCTTCTGATGAATCNNNATATAATGTAACATA]

[+] EMBL CD082461             [CCTCGAGGCCAAAAATTCGGCACGAGGTTTATGCTACTCGTGTAAAAACTACTTCACAATCTGAAATGTTCAATAAATTACAATTAACTAGTAAAGAAGTATGCAAGTGTACTGGAAATTTAATTGCATGTGTAAAAAAGGCAATTGAAGCAAAACATATAGAAGAACTTGATTTTAGTAGTCTTACATTAACTCAAGCAAAACGTATGGAAGTTGAACTACAAGTGAAAATTATTGAATTAGAAACATCGTTAACAAATGAACGACAACGTTTAGCTCAATTAAGAAGAGATAATTATCAGTTATCAGCTGAAGTAGAGTTGATCAACGAGAGATAATGAGAAACTCCCAATGAACGTTTAACAAATAAAGCAGTCTACAAATCTCAAATCTACCTTCCAAATTAAATGTAAATAGATTTATTTCAACAGCTTATCTACCTACGTTATTCTCACCAAAATTTGTTATCTTGCTACTATTACCACAATCGTTACTACCACTCCAGTAATCAGTTAGTATGCATACCTAAGTCTTTCATTATTCAAAATAACTCTCCCTATTATTGTGTGCATCAGCGGCACAAGGAAGAGTGACACAAAATCATATATTCAACTTTATACTTGATTNTCATCATTNTGTTCTTGCATGATCTCATATTGATTATTTAGTGATATGACGTTTGTTTTCTTTCTACCTAGAGAATGGAACATTGCTTTNTATTTCGACTTCGTTCCGTTATTCTCTCTTTCTTTCTCTAGAAAATAAAATAAGAAATACTCCCTCTACCTTNCTACTGNNCTGTCATATTGTGNGCCCTTAATCCCAANGCTATTGACATATGATNNTCACCNGTATACACGTCTTGCNGACTGCTGAACTTTCCGGNTATTTACAGATGAGTTCATCTCTTTAGCATCATAATATTNGGACGACANNATAGATGGGGGATNCTTCTGATGAATCNNNATATAATGTAACATA]




>consensus_5765#0
CCTCGAGGCCAAAAATTCGGCACGAGGTTTATGCTACTCGTGTAAAAACTACTTCACAAT
CTGAAATGTTCAATAAATTACAATTAACTAGTAAAGAAGTATGCAAGTGTACTGGAAATT
TAATTGCATGTGTAAAAAAGGCAATTGAAGCAAAACATATAGAAGAACTTGATTTTAGTA
GTCTTACATTAACTCAAGCAAAACGTATGGAAGTTGAACTACAAGTGAAAATTATTGAAT
TAGAAACATCGTTAACAAATGAACGACAACGTTTAGCTCAATTAAGAAGAGATAATTATC
AGTTATCAGCTGAAGTAGAGTTGATCAACGAGAGATAATGAGAAACTCCCAATGAACGTT
TAACAAATAAAGCAGTCTACAAATCTCAAATCTACCTTCCAAATTAAATGTAAATAGATT
TATTTCAACAGCTTATCTACCTACGTTATTCTCACCAAAATTTGTTATCTTGCTACTATT
ACCACAATCGTTACTACCACTCCAGTAATCAGTTAGTATGCATACCTAAGTCTTTCATTA
TTCAAAATAACTCTCCCTATTATTGTGTGCATCAGCGGCACAAGGAAGAGTGACACAAAA
TCATATATTCAACTTTATACTTGATTNTCATCATTNTGTTCTTGCATGATCTCATATTGA
TTATTTAGTGATATGACGTTTGTTTTCTTTCTACCTAGAGAATGGAACATTGCTTTNTAT
TTCGACTTCGTTCCGTTATTCTCTCTTTCTTTCTCTAGAAAATAAAATAAGAAATACTCC
CTCTACCTTNCTACTGNNCTGTCATATTGTGNGCCCTTAATCCCAANGCTATTGACATAT
GATNNTCACCNGTATACACGTCTTGCNGACTGCTGAACTTTCCGGNTATTTACAGATGAG
TTCATCTCTTTAGCATCATAATATTNGGACGACANNATAGATGGGGGATNCTTCTGATGA
ATCNNNATATAATGTAACATA

consensusID : consensus_5765#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 595
fasta sequence

                              [AACAGCTTATCTACCTACGTTATTCTCACCAAAATTTGTTATCTTGCTACTATTACCACAATCGTTACTACCACTCCAGTAATCAGTTAGTATGCATACCTAAGTCTTTCATTATTCAAAATAACTCTCCCTATTATTGTGTGCATCAGCGGCACAAGGAAGAGTGACACAAAATCATATATTCAACTTTATACTTGATTTTCATCATTTTGTTCTTGCATGATCTCATATTGATTATTTAGTGATATGACGTTTGTTTTCTTTCTACCTAGAGAATGGAACATTGCTTTTTATTTCGACTTCGTTCCGTTATTCTCTCTTCCTTTCCTCTAGAAAAATAAAATAAAGAAATAACTCCCTCTACCTTCTTACTTGTCTGTTCATATTTGTTGTGCCCTTAATCCCCAAGCTTATTTGACAATATTGATTTTTCACCCGTTATAACACGTCTTGCGGGACTGCTGAACTTTCCCGGTTATTTTACAGCATGAGTTTCATCTCTTTAGCAATTCATAATTATTTGGATCGACAATATAGTATTGTGTGATTTCTTTCTGAATGAATACTTATTATTAATATGTTAAACAATAATATA]

[-] EMBL CD076060             [AACAGCTTATCTACCTACGTTATTCTCACCAAAATTTGTTATCTTGCTACTATTACCACAATCGTTACTACCACTCCAGTAATCAGTTAGTATGCATACCTAAGTCTTTCATTATTCAAAATAACTCTCCCTATTATTGTGTGCATCAGCGGCACAAGGAAGAGTGACACAAAATCATATATTCAACTTTATACTTGATTTTCATCATTTTGTTCTTGCATGATCTCATATTGATTATTTAGTGATATGACGTTTGTTTTCTTTCTACCTAGAGAATGGAACATTGCTTTTTATTTCGACTTCGTTCCGTTATTCTCTCTTCCTTTCCTCTAGAAAAATAAAATAAAGAAATAACTCCCTCTACCTTCTTACTTGTCTGTTCATATTTGTTGTGCCCTTAATCCCCAAGCTTATTTGACAATATTGATTTTTCACCCGTTATAACACGTCTTGCGGGACTGCTGAACTTTCCCGGTTATTTTACAGCATGAGTTTCATCTCTTTAGCAATTCATAATTATTTGGATCGACAATATAGTATTGTGTGATTTCTTTCTGAATGAATACTTATTATTAATATGTTAAACAATAATATA]




>consensus_5765#1
AACAGCTTATCTACCTACGTTATTCTCACCAAAATTTGTTATCTTGCTACTATTACCACA
ATCGTTACTACCACTCCAGTAATCAGTTAGTATGCATACCTAAGTCTTTCATTATTCAAA
ATAACTCTCCCTATTATTGTGTGCATCAGCGGCACAAGGAAGAGTGACACAAAATCATAT
ATTCAACTTTATACTTGATTTTCATCATTTTGTTCTTGCATGATCTCATATTGATTATTT
AGTGATATGACGTTTGTTTTCTTTCTACCTAGAGAATGGAACATTGCTTTTTATTTCGAC
TTCGTTCCGTTATTCTCTCTTCCTTTCCTCTAGAAAAATAAAATAAAGAAATAACTCCCT
CTACCTTCTTACTTGTCTGTTCATATTTGTTGTGCCCTTAATCCCCAAGCTTATTTGACA
ATATTGATTTTTCACCCGTTATAACACGTCTTGCGGGACTGCTGAACTTTCCCGGTTATT
TTACAGCATGAGTTTCATCTCTTTAGCAATTCATAATTATTTGGATCGACAATATAGTAT
TGTGTGATTTCTTTCTGAATGAATACTTATTATTAATATGTTAAACAATAATATA

consensusID : consensus_5765#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 359
fasta sequence

                              [CCTCGCAGCCAAGAATTCGGTTCGAGGTGATCTAGTGAAACAATCTAAATTGATTCAACAGGAGTTTGACGATTCGCCAACGTCCGTTGAGTTTTATAAACCTTATAATCGTTGGACCAAGGGTCTTTTATCGGCTGCTAAGTTTGTCGGTGCTAGTGCTAATGTCATGGTTGAAATAGCTGATTCCATAGTTTGTGGAAAAGACGTAAAATTAGAGCGCTTAATCGTAATTTCACAAGAGATAGCTGCTAGTACAACTCAATTGGTTTATGCTACTCGTGTAAAAACTACTTCACAATCTGAAATGTTCAATANATTACAATTAACTAGTANAGAAGTATGNCAGTGTACTGNAAATT]

[+] EMBL CD077702             [CCTCGCAGCCAAGAATTCGGTTCGAGGTGATCTAGTGAAACAATCTAAATTGATTCAACAGGAGTTTGACGATTCGCCAACGTCCGTTGAGTTTTATAAACCTTATAATCGTTGGACCAAGGGTCTTTTATCGGCTGCTAAGTTTGTCGGTGCTAGTGCTAATGTCATGGTTGAAATAGCTGATTCCATAGTTTGTGGAAAAGACGTAAAATTAGAGCGCTTAATCGTAATTTCACAAGAGATAGCTGCTAGTACAACTCAATTGGTTTATGCTACTCGTGTAAAAACTACTTCACAATCTGAAATGTTCAATANATTACAATTAACTAGTANAGAAGTATGNCAGTGTACTGNAAATT]




>consensus_5765#2
CCTCGCAGCCAAGAATTCGGTTCGAGGTGATCTAGTGAAACAATCTAAATTGATTCAACA
GGAGTTTGACGATTCGCCAACGTCCGTTGAGTTTTATAAACCTTATAATCGTTGGACCAA
GGGTCTTTTATCGGCTGCTAAGTTTGTCGGTGCTAGTGCTAATGTCATGGTTGAAATAGC
TGATTCCATAGTTTGTGGAAAAGACGTAAAATTAGAGCGCTTAATCGTAATTTCACAAGA
GATAGCTGCTAGTACAACTCAATTGGTTTATGCTACTCGTGTAAAAACTACTTCACAATC
TGAAATGTTCAATANATTACAATTAACTAGTANAGAAGTATGNCAGTGTACTGNAAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5765#0      CCTCGAGGCCAAAAATTCGGCACGAGGTTTATGCTACTCGTGTAAAAACTACTTCACAAT 60
consensus_5765#1      ------------------------------------------------------------
consensus_5765#2      ------------------------------------------------------------
                                                                                  

consensus_5765#0      CTGAAATGTTCAATAAATTACAATTAACTAGTAAAGAAGTATGCAAGTGTACTGGAAATT 120
consensus_5765#1      ------------------------------------------------------------
consensus_5765#2      ------------------------------------------------------------
                                                                                  

consensus_5765#0      TAATTGCATGTGTAAAAAAGGCAATTGAAGCAAAACATATAGAAGAACTTGATTTTAGTA 180
consensus_5765#1      ------------------------------------------------------------
consensus_5765#2      ------------------------------------------------------------
                                                                                  

consensus_5765#0      GTCTTACATTAACTCAAGCAAAACGTATGGAAGTTGAACTACAAGTGAAAATTATTGAAT 240
consensus_5765#1      ------------------------------------------------------------
consensus_5765#2      ------------------------------------------------------------
                                                                                  

consensus_5765#0      TAGAAACATCGTTAACAAATGAACGACAACGTTTAGCTCAATTAAGAAGAGATAATTATC 300
consensus_5765#1      ------------------------------------------------------------
consensus_5765#2      ------------------------------------------------------------
                                                                                  

consensus_5765#0      AGTTATCAGCTGAAGTAGAGTTGATCAACGAGAGATAATGAGAAACTCCCAATGAACGTT 360
consensus_5765#1      ------------------------------------------------------------
consensus_5765#2      ------------------------------------------------------------
                                                                                  

consensus_5765#0      TAACAAATAAAGCAGTCTACAAATCTCAAATCTACCTTCCAAATTAAATGTAAATAGATT 420
consensus_5765#1      ------------------------------------------------------------
consensus_5765#2      ------------------------------------------------------------
                                                                                  

consensus_5765#0      TATTTCAACAGCTTATCTACCTACGTTATTCTCACCAAAATTTGTTATCTTGCTACTATT 480
consensus_5765#1      ------AACAGCTTATCTACCTACGTTATTCTCACCAAAATTTGTTATCTTGCTACTATT 54
consensus_5765#2      ------------------------------------------------------------
                                                                                  

consensus_5765#0      ACCACAATCGTTACTACCACTCCAGTAATCAGTTAGTATGCATACCTAAGTCTTTCATTA 540
consensus_5765#1      ACCACAATCGTTACTACCACTCCAGTAATCAGTTAGTATGCATACCTAAGTCTTTCATTA 114
consensus_5765#2      -------------------------------------CCTCGCAGCCAAGAATTCGGT-- 21
                                                              *  * * ***  **   *  

consensus_5765#0      TTCAAAATAACTCTCCCTATTATTGTGTGCATCAGCGGCACAAGGAAGAGTGACACAAAA 600
consensus_5765#1      TTCAAAATAACTCTCCCTATTATTGTGTGCATCAGCGGCACAAGGAAGAGTGACACAAAA 174
consensus_5765#2      -TCGAGGTGATCTAGTGAAACAATCTAAATTGATTCAACAGGAGTTTGA-CGATTCGCCA 79
                       ** *  * *        *  * * *         *  **  **   **  **  *   *

consensus_5765#0      TCATATATTCAACTTTATACTTGATTNTCATCATTNTGTTCTTGCATGATCTCATATTGA 660
consensus_5765#1      TCATATATTCAACTTTATACTTGATTTTCATCATTTTGTTCTTGCATGATCTCATATTGA 234
consensus_5765#2      ACGTCCGTTGAGTTTTATAAACC-TTATAATCGTTGGACCA----AGGGTCTTTTATCGG 134
                       * *   ** *  ******     ** * *** **          * * ***  *** * 

consensus_5765#0      TTATTTAGTGATATGACGTTTGTTTTCTTTCTACCTAGAGAATGGAACATTGCTTTNTAT 720
consensus_5765#1      TTATTTAGTGATATGACGTTTGTTTTCTTTCTACCTAGAGAATGGAACATTGCTTTTTAT 294
consensus_5765#2      CTGCTAAGTTTGTCGGTGCTAGTGCTAATGTCATGGTTGAAATAGCTGATTCCATAGTTT 194
                       *  * ***     *  * * **  *  *   *       *** *   *** * *  * *

consensus_5765#0      TTCGACTTCGTTCCGTTATTCTCTCTTTCTTTC-TCTAGAAAA-TAAAATAA-GAAATA- 776
consensus_5765#1      TTCGACTTCGTTCCGTTATTCTCTCTTCCTTTCCTCTAGAAAAATAAAATAAAGAAATAA 354
consensus_5765#2      GTGGAA---AAGACGTAAAATTAGAGCGCTTAATCGTAA-----TTTCACAA-GAGATAG 245
                       * **        *** *   *      ***     **      *   * ** ** *** 

consensus_5765#0      CTCCCTCTACCTTNCTACTGNNCTGT-CATATTG--TGNGCCCTTAATCCCAANGCTA-- 831
consensus_5765#1      CTCCCTCTACCTTCTTACTTGTCTGTTCATATTTGTTGTGCCCTTAATCCCCAAGCTTAT 414
consensus_5765#2      CTGCTAGTACAACTCAATTGGTTTATGCTACTCGTGTAAAAACTACTTCACAATCTGAAA 305
                      ** *   ***      * *    * * *   *    *     **   ** * *       

consensus_5765#0      TTGACA-TATGA--TNNTCACCNGT-ATA-CACGTCTTGCNG-ACTGCTGAACTTTCC-G 884
consensus_5765#1      TTGACAATATTGATTTTTCACCCGTTATAACACGTCTTGCGGGACTGCTGAACTTTCCCG 474
consensus_5765#2      TGTTCAATANATTACAATTAACTAGTANA-GAAGTATGNCAG-TGTACTGNAAATT---- 359
                      *   ** **        * * *    * *  * ** *  * *   * *** *  **    

consensus_5765#0      GNTATTT-ACAG-ATGAGTT-CATCTCTTTAGCA--TCATAAT-ATTNGGA-CGACANNA 937
consensus_5765#1      GTTATTTTACAGCATGAGTTTCATCTCTTTAGCAATTCATAATTATTTGGATCGACAATA 534
consensus_5765#2      ------------------------------------------------------------
                                                                                  

consensus_5765#0      TAG-ATGGGGGATNCTTCTGATGAATCNNNATATAATGT-AACATA-------------- 981
consensus_5765#1      TAGTATTGTGTGATTTCTTTCTGAATGAATACTTATTATTAATATGTTAAACAATAATAT 594
consensus_5765#2      ------------------------------------------------------------
                                                                                  

consensus_5765#0      -
consensus_5765#1      A 595
consensus_5765#2      -