cluster # 5772

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Schistosoma mansoni
cluster # 5772 cluster # 5772 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5772#0 length = 750 sequences # 2

consensus_5772#1 length = 339 sequences # 1

consensusID : consensus_5772#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 750
fasta sequence

                              [ACATTCAACACTGGACATAACTCACAAACCGGGGAAGTGAGCCGCAAGACATGGTTCACAGAACCACGCATCTGTACTTGAGGAGCTAGCACCACTGGACAAAAATATTGAGTCAACCAGCTTATAACAGTCCTCATGAACGACAATACCACAACCATCACATTCGATCAGCTCATCACGAGGATCAGTATTATCTCCCAAACACAGCATACAAATCATGATATCAATATCTTTTATTTTCGCATTATCACTAGCAATCAAATTTTGATCACCATCTGGCCCAGTACAAAATGACTCCGGTGCCCATGTGTCTTTCTCATTTTTTACGGAATTAGGTGAATTCCTTTCAGATCTAGACACGGAAATCTGACTTGTACCAGAAACTGCAGAAACGTTGGATAAGTCAACTGAAGAGTCGTCTGGACTAGAATCATCTTCATCAGTACAACCTGAGTGCGTCTCCTCATCATCATCTTCCTCATCCCTATCCTCGCAAACGTACTCGCTGTCGCTGTCATCGTCCAGCTCATCAAGCAAAGCCAAGTGGTCTGTATTTACAGGTTTTATCTGCCTCTTCGATGGATCACGACGAGCTGGAGGATATCTAACTAAAAAGGTGAATAACTACCTATTGCAGTGAATAGGGTATCTGATGTCATTACAGGACCTGAATGAAAGGTCAATACTGATTTCAGTGTTCTTTATGTCTTTNTGGAAAGTATTCAGAATGTACGTAAAGAANAACAGCGT]

[+] EMBL CD126782             [ACATTCAACACTGGACATAACTCACAAACCGGGGAAGTGAGCCGCAAGACATGGTTCACAGAACCACGCATCTGTACTTGAGGAGCTAGCACCACTGGACAAAAATATTGAGTCAACCAGCTTATAACAGTCCTCATGAACGACAATACCACAACCATCACATTCGATCAGCTCATCACGAGGATCAGTATTATCTCCCAAACACAGCATACAAATCATGATATCAATATCTTTTATTTTCGCATTATCACTAGCAATCAAATTTTGATCACCATCTGGCCCAGTACAAAATGACTCCGGTGCCCATGTGTCTTTCTCATTTTTTACGGAATTAGGTGAATTCCTTTCAGATCTAGACACGGAAATCTGACTTGTACCAGAAACTGCAGAAACGTTGGATAAGTCAACTGAAGAGTCGTCTGGACTAGAATCATCTTCAT                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD150389             [                                                                                                                                                                                   GAGGATCAGTATTATCTCCCAAACACAGCATACAAATCATGATATCAATATCTTTTATTTTCGCATTATCACTAGCAATCAAATTTTGATCACCATCTGGCCCAGTACAAAATGACTCCGGTGCCCATGTGTCTTTCTCATTTTTTACGGAATTAGGTGAATTCCTTTCAGATCTAGACACGGAAATCTGACTTGTACCAGAAACTGCAGAAACGTTGGATAAGTCAACTGAAGAGTCGTCTGGACTAGAATCATCTTCATCAGTACAACCTGAGTGCGTCTCCTCATCATCATCTTCCTCATCCCTATCCTCGCAAACGTACTCGCTGTCGCTGTCATCGTCCAGCTCATCAAGCAAAGCCAAGTGGTCTGTATTTACAGGTTTTATCTGCCTCTTCGATGGATCACGACGAGCTGGAGGATATCTAACTAAAAAGGTGAATAACTACCTATTGCAGTGAATAGGGTATCTGATGTCATTACAGGACCTGAATGAAAGGTCAATACTGATTTCAGTGTTCTTTATGTCTTTNTGGAAAGTATTCAGAATGTACGTAAAGAANAACAGCGT]




>consensus_5772#0
ACATTCAACACTGGACATAACTCACAAACCGGGGAAGTGAGCCGCAAGACATGGTTCACA
GAACCACGCATCTGTACTTGAGGAGCTAGCACCACTGGACAAAAATATTGAGTCAACCAG
CTTATAACAGTCCTCATGAACGACAATACCACAACCATCACATTCGATCAGCTCATCACG
AGGATCAGTATTATCTCCCAAACACAGCATACAAATCATGATATCAATATCTTTTATTTT
CGCATTATCACTAGCAATCAAATTTTGATCACCATCTGGCCCAGTACAAAATGACTCCGG
TGCCCATGTGTCTTTCTCATTTTTTACGGAATTAGGTGAATTCCTTTCAGATCTAGACAC
GGAAATCTGACTTGTACCAGAAACTGCAGAAACGTTGGATAAGTCAACTGAAGAGTCGTC
TGGACTAGAATCATCTTCATCAGTACAACCTGAGTGCGTCTCCTCATCATCATCTTCCTC
ATCCCTATCCTCGCAAACGTACTCGCTGTCGCTGTCATCGTCCAGCTCATCAAGCAAAGC
CAAGTGGTCTGTATTTACAGGTTTTATCTGCCTCTTCGATGGATCACGACGAGCTGGAGG
ATATCTAACTAAAAAGGTGAATAACTACCTATTGCAGTGAATAGGGTATCTGATGTCATT
ACAGGACCTGAATGAAAGGTCAATACTGATTTCAGTGTTCTTTATGTCTTTNTGGAAAGT
ATTCAGAATGTACGTAAAGAANAACAGCGT

consensusID : consensus_5772#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 339
fasta sequence

                              [GACCATTCACATTCGATCAGCTCATCACGAGGATCAGTATTATCTCCCAAACACAGCATACAAATCATGATATCAATATCGTTAATTTTCGCATTATCACTAGCAATCAAATTTTGATCACCATCTGGCCCTGAAGTATTAAAGGGTATTTCAGAACATGATCCCATTCAATAGGTTACCAGTACAAAATGACTCCGGTGCCCATGTGTCTTTCTCATTTTTTACGGAATTGGGTGAATTCCTTTCAGATCTAGACACGGAAATCTGACTTGTACCAGAAACTGCAGAAACGTTGGATAAGTCAACTGAAGAGTCGTGTGGACTAGAATCATCTTCATC]

[-] EMBL CD064138             [GACCATTCACATTCGATCAGCTCATCACGAGGATCAGTATTATCTCCCAAACACAGCATACAAATCATGATATCAATATCGTTAATTTTCGCATTATCACTAGCAATCAAATTTTGATCACCATCTGGCCCTGAAGTATTAAAGGGTATTTCAGAACATGATCCCATTCAATAGGTTACCAGTACAAAATGACTCCGGTGCCCATGTGTCTTTCTCATTTTTTACGGAATTGGGTGAATTCCTTTCAGATCTAGACACGGAAATCTGACTTGTACCAGAAACTGCAGAAACGTTGGATAAGTCAACTGAAGAGTCGTGTGGACTAGAATCATCTTCATC]




>consensus_5772#1
GACCATTCACATTCGATCAGCTCATCACGAGGATCAGTATTATCTCCCAAACACAGCATA
CAAATCATGATATCAATATCGTTAATTTTCGCATTATCACTAGCAATCAAATTTTGATCA
CCATCTGGCCCTGAAGTATTAAAGGGTATTTCAGAACATGATCCCATTCAATAGGTTACC
AGTACAAAATGACTCCGGTGCCCATGTGTCTTTCTCATTTTTTACGGAATTGGGTGAATT
CCTTTCAGATCTAGACACGGAAATCTGACTTGTACCAGAAACTGCAGAAACGTTGGATAA
GTCAACTGAAGAGTCGTGTGGACTAGAATCATCTTCATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5772#0      ACATTCAACACTGGACATAACTCACAAACCGGGGAAGTGAGCCGCAAGACATGGTTCACA 60
consensus_5772#1      ------------------------------------------------------------
                                                                                  

consensus_5772#0      GAACCACGCATCTGTACTTGAGGAGCTAGCACCACTGGACAAAAATATTGAGTCAACCAG 120
consensus_5772#1      ------------------------------------------------------------
                                                                                  

consensus_5772#0      CTTATAACAGTCCTCATGAACGACAATACCACAACCAT-CACATTCGATCAGCTCATCAC 179
consensus_5772#1      --------------------------------GACCATTCACATTCGATCAGCTCATCAC 28
                                                       ***** *********************

consensus_5772#0      GAGGATCAGTATTATCTCCCAAACACAGCATACAAATCATGATATCAATATCTTTTATTT 239
consensus_5772#1      GAGGATCAGTATTATCTCCCAAACACAGCATACAAATCATGATATCAATATCGTTAATTT 88
                      **************************************************** ** ****

consensus_5772#0      TCGCATTATCACTAGCAATCAAATTTTGATCACCATCTGGCCC----------------- 282
consensus_5772#1      TCGCATTATCACTAGCAATCAAATTTTGATCACCATCTGGCCCTGAAGTATTAAAGGGTA 148
                      *******************************************                 

consensus_5772#0      --------------------------------AGTACAAAATGACTCCGGTGCCCATGTG 310
consensus_5772#1      TTTCAGAACATGATCCCATTCAATAGGTTACCAGTACAAAATGACTCCGGTGCCCATGTG 208
                                                      ****************************

consensus_5772#0      TCTTTCTCATTTTTTACGGAATTAGGTGAATTCCTTTCAGATCTAGACACGGAAATCTGA 370
consensus_5772#1      TCTTTCTCATTTTTTACGGAATTGGGTGAATTCCTTTCAGATCTAGACACGGAAATCTGA 268
                      *********************** ************************************

consensus_5772#0      CTTGTACCAGAAACTGCAGAAACGTTGGATAAGTCAACTGAAGAGTCGTCTGGACTAGAA 430
consensus_5772#1      CTTGTACCAGAAACTGCAGAAACGTTGGATAAGTCAACTGAAGAGTCGTGTGGACTAGAA 328
                      ************************************************* **********

consensus_5772#0      TCATCTTCATCAGTACAACCTGAGTGCGTCTCCTCATCATCATCTTCCTCATCCCTATCC 490
consensus_5772#1      TCATCTTCATC------------------------------------------------- 339
                      ***********                                                 

consensus_5772#0      TCGCAAACGTACTCGCTGTCGCTGTCATCGTCCAGCTCATCAAGCAAAGCCAAGTGGTCT 550
consensus_5772#1      ------------------------------------------------------------
                                                                                  

consensus_5772#0      GTATTTACAGGTTTTATCTGCCTCTTCGATGGATCACGACGAGCTGGAGGATATCTAACT 610
consensus_5772#1      ------------------------------------------------------------
                                                                                  

consensus_5772#0      AAAAAGGTGAATAACTACCTATTGCAGTGAATAGGGTATCTGATGTCATTACAGGACCTG 670
consensus_5772#1      ------------------------------------------------------------
                                                                                  

consensus_5772#0      AATGAAAGGTCAATACTGATTTCAGTGTTCTTTATGTCTTTNTGGAAAGTATTCAGAATG 730
consensus_5772#1      ------------------------------------------------------------
                                                                                  

consensus_5772#0      TACGTAAAGAANAACAGCGT 750
consensus_5772#1      --------------------