cluster # 579

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Schistosoma mansoni
cluster # 579 cluster # 579 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_579#0 length = 533 sequences # 1

consensus_579#1 length = 314 sequences # 1

consensusID : consensus_579#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 533
fasta sequence

                              [TTTTAGATGTATGCCCATTGACTTTGGGTATTGAAACGGTTGGTGGTGTCATGACGAAACTTATTCCAAGAAATACAGTTATTCCAACGAAGAAGTCGCAGATATTTTCTACAGCTGCCGACAACCAGCCGACTGTCACAATACAGGTATTTGAGGGTGAACGAGCTATGACAAAGTCCAATCATTTCCTTGGCAAGTTTGACCTGACAGGTATTCCTCCGGCACTCCGTGGGATTCCCTGGAGTTAATCCAGATGAAGCAGTTGCATACGGTGCAGCTGTTCAGGGTGGCGTTATTGGTGGTGTGGAGAACACTGGAGGCGTTGTGCTTTTAGATGTATGCCCATTGACTTTGGGTATTGAAACGGTTGGTGGTGTCATGACGAAACTTATTCCAAGAAATACAGTTATTCCAACGAAGAAGTCGCAGATATTTTCTACAGCTGCCGACAACCAGCCGACTGTCACAATACAGGTATTTGAGGGTGAACGAGCTATGACAAAGTTCAATCATTTCCTTGGCAAGTTGACCTG]

[+] EMBL CD138878             [TTTTAGATGTATGCCCATTGACTTTGGGTATTGAAACGGTTGGTGGTGTCATGACGAAACTTATTCCAAGAAATACAGTTATTCCAACGAAGAAGTCGCAGATATTTTCTACAGCTGCCGACAACCAGCCGACTGTCACAATACAGGTATTTGAGGGTGAACGAGCTATGACAAAGTCCAATCATTTCCTTGGCAAGTTTGACCTGACAGGTATTCCTCCGGCACTCCGTGGGATTCCCTGGAGTTAATCCAGATGAAGCAGTTGCATACGGTGCAGCTGTTCAGGGTGGCGTTATTGGTGGTGTGGAGAACACTGGAGGCGTTGTGCTTTTAGATGTATGCCCATTGACTTTGGGTATTGAAACGGTTGGTGGTGTCATGACGAAACTTATTCCAAGAAATACAGTTATTCCAACGAAGAAGTCGCAGATATTTTCTACAGCTGCCGACAACCAGCCGACTGTCACAATACAGGTATTTGAGGGTGAACGAGCTATGACAAAGTTCAATCATTTCCTTGGCAAGTTGACCTG]




>consensus_579#0
TTTTAGATGTATGCCCATTGACTTTGGGTATTGAAACGGTTGGTGGTGTCATGACGAAAC
TTATTCCAAGAAATACAGTTATTCCAACGAAGAAGTCGCAGATATTTTCTACAGCTGCCG
ACAACCAGCCGACTGTCACAATACAGGTATTTGAGGGTGAACGAGCTATGACAAAGTCCA
ATCATTTCCTTGGCAAGTTTGACCTGACAGGTATTCCTCCGGCACTCCGTGGGATTCCCT
GGAGTTAATCCAGATGAAGCAGTTGCATACGGTGCAGCTGTTCAGGGTGGCGTTATTGGT
GGTGTGGAGAACACTGGAGGCGTTGTGCTTTTAGATGTATGCCCATTGACTTTGGGTATT
GAAACGGTTGGTGGTGTCATGACGAAACTTATTCCAAGAAATACAGTTATTCCAACGAAG
AAGTCGCAGATATTTTCTACAGCTGCCGACAACCAGCCGACTGTCACAATACAGGTATTT
GAGGGTGAACGAGCTATGACAAAGTTCAATCATTTCCTTGGCAAGTTGACCTG

consensusID : consensus_579#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 314
fasta sequence

                              [CGGCTCACGGAACTTTCCTAAGGTTCAGACTTCTACGAAGTTTCTTCGAAAAAGAACTTACACAGGAGTTAATCCAGATGAAGCAGTTGCATACGGTGCAGCTGTTCAGGGTGGCGTTATTGGTGGTGTGGAGAACACTGGAGGCGTTGTGCTTTTAGATGTATGCCCATTGACTTTGGGTATTGAAACGGTTGGTGGTGTCATGACGAAACTTATTCCAAGAAATACAGTTATTCCAACGAAGAAGTCGCAGATATTTTCTACAGCTGCCGACAACCAGCCGACTGTCACAATACAGGTATTTGAGGGTGAAC]

[+] EMBL CD167383             [CGGCTCACGGAACTTTCCTAAGGTTCAGACTTCTACGAAGTTTCTTCGAAAAAGAACTTACACAGGAGTTAATCCAGATGAAGCAGTTGCATACGGTGCAGCTGTTCAGGGTGGCGTTATTGGTGGTGTGGAGAACACTGGAGGCGTTGTGCTTTTAGATGTATGCCCATTGACTTTGGGTATTGAAACGGTTGGTGGTGTCATGACGAAACTTATTCCAAGAAATACAGTTATTCCAACGAAGAAGTCGCAGATATTTTCTACAGCTGCCGACAACCAGCCGACTGTCACAATACAGGTATTTGAGGGTGAAC]




>consensus_579#1
CGGCTCACGGAACTTTCCTAAGGTTCAGACTTCTACGAAGTTTCTTCGAAAAAGAACTTA
CACAGGAGTTAATCCAGATGAAGCAGTTGCATACGGTGCAGCTGTTCAGGGTGGCGTTAT
TGGTGGTGTGGAGAACACTGGAGGCGTTGTGCTTTTAGATGTATGCCCATTGACTTTGGG
TATTGAAACGGTTGGTGGTGTCATGACGAAACTTATTCCAAGAAATACAGTTATTCCAAC
GAAGAAGTCGCAGATATTTTCTACAGCTGCCGACAACCAGCCGACTGTCACAATACAGGT
ATTTGAGGGTGAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_579#0      TTTTAGATGTATGCCCATTGACTTTGGGTATTGAAACGGTTGGTGGTGTCATGACGAAAC 60
consensus_579#1      ------------------------------------------------------------
                                                                                 

consensus_579#0      TTATTCCAAGAAATACAGTTATTCCAACGAAGAAGTCGCAGATATTTTCTACAGCTGCCG 120
consensus_579#1      ------------------------------------------------------------
                                                                                 

consensus_579#0      ACAACCAGCCGACTGTCACAATACAGGTATTTGAGGGTGAACGAGCTATGACAAAGTCCA 180
consensus_579#1      -----------------------------------------------------CGGCTCA 7
                                                                            *  **

consensus_579#0      ATCATTTCCTTGGCAAGTTTGACCTGACAGGTATTCCTCCGGCACTCCGTGGGATTCCCT 240
consensus_579#1      CGGAACTTTCCTAAGGTTCAGACTTCTACGAAGTTTCTTCGAAA---AAGAACTTACACA 64
                        *  *          *  *** *    *   ** ** **  *          * * * 

consensus_579#0      GGAGTTAATCCAGATGAAGCAGTTGCATACGGTGCAGCTGTTCAGGGTGGCGTTATTGGT 300
consensus_579#1      GGAGTTAATCCAGATGAAGCAGTTGCATACGGTGCAGCTGTTCAGGGTGGCGTTATTGGT 124
                     ************************************************************

consensus_579#0      GGTGTGGAGAACACTGGAGGCGTTGTGCTTTTAGATGTATGCCCATTGACTTTGGGTATT 360
consensus_579#1      GGTGTGGAGAACACTGGAGGCGTTGTGCTTTTAGATGTATGCCCATTGACTTTGGGTATT 184
                     ************************************************************

consensus_579#0      GAAACGGTTGGTGGTGTCATGACGAAACTTATTCCAAGAAATACAGTTATTCCAACGAAG 420
consensus_579#1      GAAACGGTTGGTGGTGTCATGACGAAACTTATTCCAAGAAATACAGTTATTCCAACGAAG 244
                     ************************************************************

consensus_579#0      AAGTCGCAGATATTTTCTACAGCTGCCGACAACCAGCCGACTGTCACAATACAGGTATTT 480
consensus_579#1      AAGTCGCAGATATTTTCTACAGCTGCCGACAACCAGCCGACTGTCACAATACAGGTATTT 304
                     ************************************************************

consensus_579#0      GAGGGTGAACGAGCTATGACAAAGTTCAATCATTTCCTTGGCAAGTTGACCTG 533
consensus_579#1      GAGGGTGAAC------------------------------------------- 314
                     **********