cluster # 5793

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Schistosoma mansoni
cluster # 5793 cluster # 5793 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5793#0 length = 394 sequences # 2

consensus_5793#1 length = 205 sequences # 1

consensusID : consensus_5793#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 394
fasta sequence

                              [GGTTTTACTCTTGTGATTTGTTGCATGCACTATACAGATCATGTTTGAAGGATCAGAGCCTGGTTGTGGAGCAGGAAAGGGCGGTGGTGCCGGTGGTTCTATTCGTGAAGCTGGTGGTTCACTAGGCAAGAGGGAAGCCACTTTAGAAGATGAATACTTCCGACGTTTGGATAAACAAAACATCGAAGCACTCAAGGATAAACTGAATAAGAAATCTGATGTGGAAAAATAATCTTCGAAGAAATCTAACATTTAAAAGATGAATGATAATCTGTTTTATCGGTTTTAATGCTTTTAATAATGTTTTGGACATAACTTCATCATGTAGTGGTTATTTTACTTTTAGAAACAATAAATATATCCTCTTTTTGCTTGTAAAAAAAAAAAAAAAAAA]

[+] EMBL SM30266              [GGTTTTACTCTTGTGATTTGTTGCATGCACTATACAGATCATGTTTGAAGGATCAGAGCCTGGTTGTGGAGCAGGAAAGGGCGGTGGTGCCGGTGGTTCTATTCGTGAAGCTGGTGGTTCACTAGGCAAGAGGGAAGCCACTTTAGAAGATGAATACTTCCGACGTTTGGATAAACAAAACATCGAAGCACTCAAGGATAAACTGAATAAGAAATCTGATGTGGAAAAATAATCTTCGAAGAAATCTAACATTTAAAAGATGAATGATAATCTGTTTTATCGGTTTTAATGCTTTTAATAATGTTTTGGACATAACTTCATCATGTAGTGGTTATTTTACTTTTAGAAACAATAAATATATCCTCTTTTTGCTTGTAAAAAA            ]
[-] EMBL AI395022             [            tTGA TTGTTGCATGCACTATACAGATCATGTTTGAAGGATCAGAGCCTGGTTGTGGAGCAGGAAAGGGCGGTGGTGCCGGTGGTTCTATTCGTGAAGCTGGTGGTTCACTAGGCAAGAGGGAAGCCACTTTAGAAGATGAATACTTCCGACGTTTGGATAAACAAAACATCGAAGCACTCAAGGATAAACTGAATAAGAAATCTGATGTGGAAAAATAATCTTCGAAGAAATCTAACATTTAAAAGATGAATGATAATCTGTTTTATCGGTTTTAATGCTTTTAATAATGTTTTGGACATAACTTCATCATGTAGTGGTTATTTTACTTTTAGAAACAATAAATATATCCTCTTTTTGCTTGTAAAAAAAAAAAAAAAAAA]




>consensus_5793#0
GGTTTTACTCTTGTGATTTGTTGCATGCACTATACAGATCATGTTTGAAGGATCAGAGCC
TGGTTGTGGAGCAGGAAAGGGCGGTGGTGCCGGTGGTTCTATTCGTGAAGCTGGTGGTTC
ACTAGGCAAGAGGGAAGCCACTTTAGAAGATGAATACTTCCGACGTTTGGATAAACAAAA
CATCGAAGCACTCAAGGATAAACTGAATAAGAAATCTGATGTGGAAAAATAATCTTCGAA
GAAATCTAACATTTAAAAGATGAATGATAATCTGTTTTATCGGTTTTAATGCTTTTAATA
ATGTTTTGGACATAACTTCATCATGTAGTGGTTATTTTACTTTTAGAAACAATAAATATA
TCCTCTTTTTGCTTGTAAAAAAAAAAAAAAAAAA

consensusID : consensus_5793#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 205
fasta sequence

                              [GGTTGTGGAGCAGGAAAGGGCGGTGGTGCCGGTGGTTCTATTCGTGAAGCTGGTGGTTCACTAGGCAAGAGGGAAGCCACTTTGAGAAGATGAATACTTCCGACGTTTGCGACTAAACAAAACAGTCGTAGCAGCTCAAGGATGGAAACTGAATCAAGAAACTCTGAGTGTCAAAATGAACGCTTCGAACGCAAGGTCCTAAGCA]

[+] EMBL AA917188             [GGTTGTGGAGCAGGAAAGGGCGGTGGTGCCGGTGGTTCTATTCGTGAAGCTGGTGGTTCACTAGGCAAGAGGGAAGCCACTTTGAGAAGATGAATACTTCCGACGTTTGCGACTAAACAAAACAGTCGTAGCAGCTCAAGGATGGAAACTGAATCAAGAAACTCTGAGTGTCAAAATGAACGCTTCGAACGCAAGGTCCTAAGCA]




>consensus_5793#1
GGTTGTGGAGCAGGAAAGGGCGGTGGTGCCGGTGGTTCTATTCGTGAAGCTGGTGGTTCA
CTAGGCAAGAGGGAAGCCACTTTGAGAAGATGAATACTTCCGACGTTTGCGACTAAACAA
AACAGTCGTAGCAGCTCAAGGATGGAAACTGAATCAAGAAACTCTGAGTGTCAAAATGAA
CGCTTCGAACGCAAGGTCCTAAGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5793#0      GGTTTTACTCTTGTGATTTGTTGCATGCACTATACAGATCATGTTTGAAGGATCAGAGCC 60
consensus_5793#1      ------------------------------------------------------------
                                                                                  

consensus_5793#0      TGGTTGTGGAGCAGGAAAGGGCGGTGGTGCCGGTGGTTCTATTCGTGAAGCTGGTGGTTC 120
consensus_5793#1      -GGTTGTGGAGCAGGAAAGGGCGGTGGTGCCGGTGGTTCTATTCGTGAAGCTGGTGGTTC 59
                       ***********************************************************

consensus_5793#0      ACTAGGCAAGAGGGAAGCCACTTT-AGAAGATGAATACTTCCGACGTTTGGA--TAAACA 177
consensus_5793#1      ACTAGGCAAGAGGGAAGCCACTTTGAGAAGATGAATACTTCCGACGTTTGCGACTAAACA 119
                      ************************ *************************    ******

consensus_5793#0      AAACA-TCGAAGCA-CTCAAGGAT--AAACTGAAT-AAGAAATCTGATGTGGAAAAATAA 232
consensus_5793#1      AAACAGTCGTAGCAGCTCAAGGATGGAAACTGAATCAAGAAACTCTGAGTGTCAAAATGA 179
                      ***** *** **** *********  ********* ******      ***  ***** *

consensus_5793#0      TCTTCGAAGAAATCTAACATTTAAAAGATGAATGATAATCTGTTTTATCGGTTTTAATGC 292
consensus_5793#1      ACGCTTCG--AACGCAAGGTCCTAAGCA-------------------------------- 205
                       *        **   **  *   **  *                                

consensus_5793#0      TTTTAATAATGTTTTGGACATAACTTCATCATGTAGTGGTTATTTTACTTTTAGAAACAA 352
consensus_5793#1      ------------------------------------------------------------
                                                                                  

consensus_5793#0      TAAATATATCCTCTTTTTGCTTGTAAAAAAAAAAAAAAAAAA 394
consensus_5793#1      ------------------------------------------