cluster # 5795

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Schistosoma mansoni
cluster # 5795 cluster # 5795 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5795#0 length = 755 sequences # 2

consensus_5795#1 length = 368 sequences # 1

consensusID : consensus_5795#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 755
fasta sequence

                              [TCGGCACGAGGGGGCAGGGCAAAACATCAACTATAATCCAAATGAGCCAACTGAAGACCTTAAAGCATTTGAGCGTCGTCTTCGTGAAATTATCAATGGTTTAGGTCCGAAAGCATTTAAGTGGCGAATTGTCCTGTCTGTAGCTGTACTTATACACCTATGTTCATCATATTGTTGGCTTGTCGACCCTGTCACATACCAAGCCGGTTTTATCGGTTCCTTGGAAAAACATCCAGA-ATTTGTATTAAGTCTTTTGTTCCTCATGGCTCTCTTTTTTTTGGGAGCACATAAAAAGGTCGTTTTGCCTAGTATCATAGCTCATCGCAGCCGAATTGTTTTGGCAGAATATAATATGGCATGTGATAATTCTGGAAAGCTCATTTTAAGACCTAAACCTAATCTCTAATAAACTATGTATAAATGCGTCGTGTACATAATGTATAAAAATCAGCCGTTAAGTCTTTCATTATAGTTTGCTTCGGACTATATGGATATATGTAGTCGTACTGAATAATGGTCAGTCAACGGATGAAAAGGAACAATTAAATCCAGATTTTCAAGTTTATTATATCAATGTTCGTGTTATGAAGATTCCCGGAGTATAAAATTCATATTTACACTGTTTAGTAAGTTATTCGTGGGATTCTCCCCACTTTTTTTCANACGTGCCANATTATGTGATTACTCTCATC-AACGATTGAC-AATG-AAAGCTTAAATG-TGA-TCATTTG-A-CACTGA-TACTA-GAAATATATTTTTCA]

[+] EMBL CD080399             [TCGGCACGAGGGGGCAGGGCAAAACATCAACTATAATCCAAATGAGCCAACTGAAGACCTTAAAGCATTTGAGCGTCGTCTTCGTGAAATTATCAATGGTTTAGGTCCGAAAGCATTTAAGTGGCGAATTGTCCTGTCTGTAGCTGTACTTATACACCTATGTTCATCATATTGTTGGCTTGTCGACCCTGTCACATACCAAGCCGGTTTTATCGGTTCCTTGGAAAAACATCCAGA ATTTGTATTAAGTCTTTTGTTCCTCATGGCTCTCTTTTTTTTGGGAGCACATAAAAAGGTCGTTTTGCCTAGTATCATAGCTCATCGCAGCCGAATTGTTTTGGCAGAATATAATATGGCATGTGATAATTCTGGAAAGCTCATTTTAAGACCTAAACCTAATCTCTAATAAACTATGTATAAATGCGTCGTGTACATAATGTATAAAAATCAGCCGTTAAGTCTTTCATTATAGTTTGCTTCGGACTATATGGATATATGTAGTCGTACTGAATAATGGTCAGTCAACGGATGAAAAGGAACAATTAAATCCAGATTTTCAAGTTTATTATATCAATGTTCGTGTTATGAAGATTCCCGGAGTATAAAATTCATATTTACACTGTTTAGTAAGTTATTCGTGGGATTCTCCCCACTTTTTTTCANACGTGCCANATTATGTGATTACTCTCATC AACGATTGAC AATG AAAGCTTAAATG TGA TCATTTG A CACTGA TACTA GAAATATATTTT   ]
[-] EMBL CD074314             [                                                                                                                                                                       CATATTGTTGGCTTGTCGACCCTGTCACATACCAAGCCGGTTTTATCGGTTCCTTGGAAAAACATCCAGANATTTGTATTAAGTCTTTTGTTCCTCATGGCTCTCTTTTTTTTGGGAGCACATAAAAAGGTCGTTTTGCCTAGTATCATAGCTCATCGCAGCCGAATTGTTTTGGCAGAATATAATATGGCATGTGATAATTCTGGAAAGCTCATTTTAAGACCTAAACCTAATCTCTAATAAACTATGTATAAATGCGTCGTGTACATAATGTATAAAAATCAGCCGTTAAGTCTTTCATTATAGTTTGCTTCGGACTATATGGATATATGTAGTCGTACTGAATAATGGTCAGTCAACGGATGAAAAGGAACAATTAAATCCAGATTTTCAAGTTTATTATATCAATGTTCGTGTTATGAAGATTCCCGGAGTATAAAATTCATATTTACACTGTTTAGTAAGTTATTCGTGGGATTCTCCCCACTTTTTTTCAAACGTGCCAAATTATGTGATTACTCTCATCAAACGATTGACAAATGAAAAGCTT AATGTTGATTCATTTGTACCACTGATTACTAGGAAATATATTTTTCA]




>consensus_5795#0
TCGGCACGAGGGGGCAGGGCAAAACATCAACTATAATCCAAATGAGCCAACTGAAGACCT
TAAAGCATTTGAGCGTCGTCTTCGTGAAATTATCAATGGTTTAGGTCCGAAAGCATTTAA
GTGGCGAATTGTCCTGTCTGTAGCTGTACTTATACACCTATGTTCATCATATTGTTGGCT
TGTCGACCCTGTCACATACCAAGCCGGTTTTATCGGTTCCTTGGAAAAACATCCAGAATT
TGTATTAAGTCTTTTGTTCCTCATGGCTCTCTTTTTTTTGGGAGCACATAAAAAGGTCGT
TTTGCCTAGTATCATAGCTCATCGCAGCCGAATTGTTTTGGCAGAATATAATATGGCATG
TGATAATTCTGGAAAGCTCATTTTAAGACCTAAACCTAATCTCTAATAAACTATGTATAA
ATGCGTCGTGTACATAATGTATAAAAATCAGCCGTTAAGTCTTTCATTATAGTTTGCTTC
GGACTATATGGATATATGTAGTCGTACTGAATAATGGTCAGTCAACGGATGAAAAGGAAC
AATTAAATCCAGATTTTCAAGTTTATTATATCAATGTTCGTGTTATGAAGATTCCCGGAG
TATAAAATTCATATTTACACTGTTTAGTAAGTTATTCGTGGGATTCTCCCCACTTTTTTT
CANACGTGCCANATTATGTGATTACTCTCATCAACGATTGACAATGAAAGCTTAAATGTG
ATCATTTGACACTGATACTAGAAATATATTTTTCA

consensusID : consensus_5795#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 368
fasta sequence

                              [ATCTCTAATAAACTATGTATAAATGCGTCGTGTACATAATGTATAAAAATCAGCCGTTAAGTCTTTCATTATAGTTTGCTTCGGACTATATGGATATATGTAGTCGTACTGAATAATGGTCGGGCACACGGAGGNNNGGGACAAAAAAAAACAATAACCAATTTCAGTTATTATATCAATGTTCGTTGTATGAAGATTCCCGGAGTATAAAATTCAATATTTACACTGTTTAGTAAGTTATTCGTGGGATTCTCCCCACTTTTTTTCAAACGTGCCAAATTATGTGATTACTCTCATCAAACGATTGACAAATGAAAAGCTTAATGTTGATTCATTTGTACCACTGATTACTAGGAAATATATTTTTC]

[-] EMBL CD074491             [ATCTCTAATAAACTATGTATAAATGCGTCGTGTACATAATGTATAAAAATCAGCCGTTAAGTCTTTCATTATAGTTTGCTTCGGACTATATGGATATATGTAGTCGTACTGAATAATGGTCGGGCACACGGAGGNNNGGGACAAAAAAAAACAATAACCAATTTCAGTTATTATATCAATGTTCGTTGTATGAAGATTCCCGGAGTATAAAATTCAATATTTACACTGTTTAGTAAGTTATTCGTGGGATTCTCCCCACTTTTTTTCAAACGTGCCAAATTATGTGATTACTCTCATCAAACGATTGACAAATGAAAAGCTTAATGTTGATTCATTTGTACCACTGATTACTAGGAAATATATTTTTC]




>consensus_5795#1
ATCTCTAATAAACTATGTATAAATGCGTCGTGTACATAATGTATAAAAATCAGCCGTTAA
GTCTTTCATTATAGTTTGCTTCGGACTATATGGATATATGTAGTCGTACTGAATAATGGT
CGGGCACACGGAGGNNNGGGACAAAAAAAAACAATAACCAATTTCAGTTATTATATCAAT
GTTCGTTGTATGAAGATTCCCGGAGTATAAAATTCAATATTTACACTGTTTAGTAAGTTA
TTCGTGGGATTCTCCCCACTTTTTTTCAAACGTGCCAAATTATGTGATTACTCTCATCAA
ACGATTGACAAATGAAAAGCTTAATGTTGATTCATTTGTACCACTGATTACTAGGAAATA
TATTTTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5795#0      TCGGCACGAGGGGGCAGGGCAAAACATCAACTATAATCCAAATGAGCCAACTGAAGACCT 60
consensus_5795#1      ------------------------------------------------------------
                                                                                  

consensus_5795#0      TAAAGCATTTGAGCGTCGTCTTCGTGAAATTATCAATGGTTTAGGTCCGAAAGCATTTAA 120
consensus_5795#1      ------------------------------------------------------------
                                                                                  

consensus_5795#0      GTGGCGAATTGTCCTGTCTGTAGCTGTACTTATACACCTATGTTCATCATATTGTTGGCT 180
consensus_5795#1      ------------------------------------------------------------
                                                                                  

consensus_5795#0      TGTCGACCCTGTCACATACCAAGCCGGTTTTATCGGTTCCTTGGAAAAACATCCAGAATT 240
consensus_5795#1      ------------------------------------------------------------
                                                                                  

consensus_5795#0      TGTATTAAGTCTTTTGTTCCTCATGGCTCTCTTTTTTTTGGGAGCACATAAAAAGGTCGT 300
consensus_5795#1      ------------------------------------------------------------
                                                                                  

consensus_5795#0      TTTGCCTAGTATCATAGCTCATCGCAGCCGAATTGTTTTGGCAGAATATAATATGGCATG 360
consensus_5795#1      ------------------------------------------------------------
                                                                                  

consensus_5795#0      TGATAATTCTGGAAAGCTCATTTTAAGACCTAAACCTAATCTCTAATAAACTATGTATAA 420
consensus_5795#1      --------------------------------------ATCTCTAATAAACTATGTATAA 22
                                                            **********************

consensus_5795#0      ATGCGTCGTGTACATAATGTATAAAAATCAGCCGTTAAGTCTTTCATTATAGTTTGCTTC 480
consensus_5795#1      ATGCGTCGTGTACATAATGTATAAAAATCAGCCGTTAAGTCTTTCATTATAGTTTGCTTC 82
                      ************************************************************

consensus_5795#0      GGACTATATGGATATATGTAGTCGTACTGAATAATGGTCAGTCA-ACGGATGAAAAGGAA 539
consensus_5795#1      GGACTATATGGATATATGTAGTCGTACTGAATAATGGTCGGGCACACGGAGGNNNGGGAC 142
                      *************************************** * ** ***** *    *** 

consensus_5795#0      CAATTAAATCCAGATTT--TCAAGTTTATTATATCAATGTTCGTGTTATGAAGATTCCCG 597
consensus_5795#1      AAAAAAAAACAATAACCAATTTCAGTTATTATATCAATGTTCGTTGTATGAAGATTCCCG 202
                       **  *** * * *     *     *******************  **************

consensus_5795#0      GAGTATAAAATTCA-TATTTACACTGTTTAGTAAGTTATTCGTGGGATTCTCCCCACTTT 656
consensus_5795#1      GAGTATAAAATTCAATATTTACACTGTTTAGTAAGTTATTCGTGGGATTCTCCCCACTTT 262
                      ************** *********************************************

consensus_5795#0      TTTTCANACGTGCCANATTATGTGATTACTCTCATCAA-CGATTGACAA-TGAAAGCTTA 714
consensus_5795#1      TTTTCAAACGTGCCAAATTATGTGATTACTCTCATCAAACGATTGACAAATGAAAAGCTT 322
                      ****** ******** ********************** ********** *****   * 

consensus_5795#0      AATGTGA--TCATTTGA--CACTGAT-ACTAG-AAATATATTTTTCA 755
consensus_5795#1      AATGTTGATTCATTTGTACCACTGATTACTAGGAAATATATTTTTC- 368
                      *****    *******   ******* ***** *************