cluster # 5802

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 5802 cluster # 5802 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5802#0 length = 455 sequences # 1

consensus_5802#1 length = 236 sequences # 2

consensusID : consensus_5802#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 455
fasta sequence

                              [GTTTTATTAATTTTCTTTTAGTTTGTTTGGTTTTTCTTTGTAATATTTTGAAATATGTTTATGTGCGTTCATGTGTGTGTGTGTGTGTGTGAGAGAGAGGGAGAGAGCTTGTCAGTGTTTTTTAATCAGTATTTTATGCTTGTGCTGAATAGTAATTAACTTAGAATCTTTTAATTTGTTTATCTCATTCATTTGCAAATTAGCTTAAAGATTTATTCATTTTTTACGTATATATATATATATATATATATATATATATATATATAATTTAATTCTTTACTTTTTCTAAATAGATGTAAGCAGGCAACAACATGATTGACAAGCTAATGAATAAAAAGCTATTTAAATTATCACCGGTATCAGTAAACAATTTTGTTTTTCGCCGACTCTTCATTTTGGCACACACATGTAGTGGAAAAATCAGTTGCCTAGTGATTTGTTCTTTCTTCTTCGTA]

[+] EMBL CD079195             [GTTTTATTAATTTTCTTTTAGTTTGTTTGGTTTTTCTTTGTAATATTTTGAAATATGTTTATGTGCGTTCATGTGTGTGTGTGTGTGTGTGAGAGAGAGGGAGAGAGCTTGTCAGTGTTTTTTAATCAGTATTTTATGCTTGTGCTGAATAGTAATTAACTTAGAATCTTTTAATTTGTTTATCTCATTCATTTGCAAATTAGCTTAAAGATTTATTCATTTTTTACGTATATATATATATATATATATATATATATATATATATAATTTAATTCTTTACTTTTTCTAAATAGATGTAAGCAGGCAACAACATGATTGACAAGCTAATGAATAAAAAGCTATTTAAATTATCACCGGTATCAGTAAACAATTTTGTTTTTCGCCGACTCTTCATTTTGGCACACACATGTAGTGGAAAAATCAGTTGCCTAGTGATTTGTTCTTTCTTCTTCGTA]




>consensus_5802#0
GTTTTATTAATTTTCTTTTAGTTTGTTTGGTTTTTCTTTGTAATATTTTGAAATATGTTT
ATGTGCGTTCATGTGTGTGTGTGTGTGTGTGAGAGAGAGGGAGAGAGCTTGTCAGTGTTT
TTTAATCAGTATTTTATGCTTGTGCTGAATAGTAATTAACTTAGAATCTTTTAATTTGTT
TATCTCATTCATTTGCAAATTAGCTTAAAGATTTATTCATTTTTTACGTATATATATATA
TATATATATATATATATATATATATAATTTAATTCTTTACTTTTTCTAAATAGATGTAAG
CAGGCAACAACATGATTGACAAGCTAATGAATAAAAAGCTATTTAAATTATCACCGGTAT
CAGTAAACAATTTTGTTTTTCGCCGACTCTTCATTTTGGCACACACATGTAGTGGAAAAA
TCAGTTGCCTAGTGATTTGTTCTTTCTTCTTCGTA

consensusID : consensus_5802#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 236
fasta sequence

                              [GATGGATCAGCTGTTACATCTGTAACTGGTGGTGGTGATGTGGCAAATTTTCCCTACAGAACAACTTCTGAAGATGTAAGCAGGCAACAACATGATTGACAAGCTAATGAATAAAAAGCTATTTAAATTATCACCGGTATCAGTAAACAATTTTGTTTTTCGCCGACTCTTCATTTTGGCACACACATGTAGTGGAAAAATCAGTTGCCTAGTGATTTGTTCTTTCTTCTTCGTAT]

[-] EMBL CD074508             [GATGGATCAGCTGTTACATCTGTAACTGGTGGTGGTGATGTGGCAAATTTTCCCTACAGAACAACTTCTGAAGATGTAAGCAGGCAACAACATGATTGACAAGCTAATGAATAAAAAGCTATTTAAATTATCACCGGTATCAGTAAACAATTTTGTTTTTCGCCGACTCTTCATTTTGGCACACACATGTAGTGGAAAAATCAGTTGCCTAGTGATTTGTTCTTTCTTCTTCGTAT]
[-] EMBL CD074330             [                                                                     GAAGATGTAAGCAGGCAACAACATGATTGACAAGCTAATGAATAAAAAGCTATTTAAATTATCACCGGTATCAGTAAACAATTTTGTTTTTCGCCGACTCTTCATTTTGGCACACACATGTAGTGGAAAAATCAGTTGCCTAGTGATTTGTTCTTTCTTCTTCGTAT]




>consensus_5802#1
GATGGATCAGCTGTTACATCTGTAACTGGTGGTGGTGATGTGGCAAATTTTCCCTACAGA
ACAACTTCTGAAGATGTAAGCAGGCAACAACATGATTGACAAGCTAATGAATAAAAAGCT
ATTTAAATTATCACCGGTATCAGTAAACAATTTTGTTTTTCGCCGACTCTTCATTTTGGC
ACACACATGTAGTGGAAAAATCAGTTGCCTAGTGATTTGTTCTTTCTTCTTCGTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5802#0      GTTTTATTAATTTTCTTTTAGTTTGTTTGGTTTTTCTTTGTAATATTTTGAAATATGTTT 60
consensus_5802#1      ------------------------------------------------------------
                                                                                  

consensus_5802#0      ATGTGCGTTCATGTGTGTGTGTGTGTGTGTGAGAGAGAGGGAGAGAGCTTGTCAGTGTTT 120
consensus_5802#1      ------------------------------------------------------------
                                                                                  

consensus_5802#0      TTTAATCAGTATTTTATGCTTGTGCTGAATAGTAATTAACTTAGAATCTTTTAATTTGTT 180
consensus_5802#1      ------------------------------------------------------------
                                                                                  

consensus_5802#0      TATCTCATTCATTTGCAAATTAGCTTAAAGATTTATTCATTTTTTACGTATATATATATA 240
consensus_5802#1      -----------------------------GATGGAT-CAGCTGTTACATCTGTAACTGGT 30
                                                   ***  ** **  * **** * * **  *   

consensus_5802#0      TATATATATATATATATATATATATAATTTAATTCTTTACTTTTTCTAAATAGATGTAAG 300
consensus_5802#1      GGTGGTGATGTG-----GCAAATTTTCCCTA---CAGAACAACTTCTGA--AGATGTAAG 80
                        *    ** *        * ** *    **   *   **   **** *  *********

consensus_5802#0      CAGGCAACAACATGATTGACAAGCTAATGAATAAAAAGCTATTTAAATTATCACCGGTAT 360
consensus_5802#1      CAGGCAACAACATGATTGACAAGCTAATGAATAAAAAGCTATTTAAATTATCACCGGTAT 140
                      ************************************************************

consensus_5802#0      CAGTAAACAATTTTGTTTTTCGCCGACTCTTCATTTTGGCACACACATGTAGTGGAAAAA 420
consensus_5802#1      CAGTAAACAATTTTGTTTTTCGCCGACTCTTCATTTTGGCACACACATGTAGTGGAAAAA 200
                      ************************************************************

consensus_5802#0      TCAGTTGCCTAGTGATTTGTTCTTTCTTCTTCGTA- 455
consensus_5802#1      TCAGTTGCCTAGTGATTTGTTCTTTCTTCTTCGTAT 236
                      ***********************************