cluster # 5804

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Schistosoma mansoni
cluster # 5804 cluster # 5804 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5804#0 length = 560 sequences # 1

consensus_5804#1 length = 471 sequences # 2

consensusID : consensus_5804#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 560
fasta sequence

                              [CCTCTGGNCAAGGGTGGNAAATCAGGGAAACTGCATCACATGGCAAGCGTCAACATGAAATCATGGTGGGAAGAGGAAGGCCAAAGAACATATTGAGTGCAGAATCGGAAGCAGATCAAAAGCATGAATAACAATTAGAAAGAATTGTTGAGGACAGAGTTGAACGGGAAATGCTAGTGGGTGGCCTATGCTTCTCTACGTGAGGTAACAGGCATAGTTAACTATGTAATTAAGCAATCAAATACTGTTTTTTCCTACGTAGTTATCTACGTTTTTTGTACTAAATATATCGAGAACATCAAGCAAATTGAAGTCACGCGCTATGTAAACCTCTGGAATAGATTACCAGTAGACATCCGGTCAAGCCAAACGCTTATTCAATTTAAATCCTTCCTTAACCGCTTTATGGACCGATTCCCACATGTTCCCACATGTTCGATGGAGATTACCTAAACCAACCTGCATTTGACAATGGTCCATCCAACATCTAACCGACTGACATTTGATAGCCATGCCACAAACTGAGATCATTTGACGCCGAATAGCCTCTGAAACTTTAC]

[+] EMBL CD167873             [CCTCTGGNCAAGGGTGGNAAATCAGGGAAACTGCATCACATGGCAAGCGTCAACATGAAATCATGGTGGGAAGAGGAAGGCCAAAGAACATATTGAGTGCAGAATCGGAAGCAGATCAAAAGCATGAATAACAATTAGAAAGAATTGTTGAGGACAGAGTTGAACGGGAAATGCTAGTGGGTGGCCTATGCTTCTCTACGTGAGGTAACAGGCATAGTTAACTATGTAATTAAGCAATCAAATACTGTTTTTTCCTACGTAGTTATCTACGTTTTTTGTACTAAATATATCGAGAACATCAAGCAAATTGAAGTCACGCGCTATGTAAACCTCTGGAATAGATTACCAGTAGACATCCGGTCAAGCCAAACGCTTATTCAATTTAAATCCTTCCTTAACCGCTTTATGGACCGATTCCCACATGTTCCCACATGTTCGATGGAGATTACCTAAACCAACCTGCATTTGACAATGGTCCATCCAACATCTAACCGACTGACATTTGATAGCCATGCCACAAACTGAGATCATTTGACGCCGAATAGCCTCTGAAACTTTAC]




>consensus_5804#0
CCTCTGGNCAAGGGTGGNAAATCAGGGAAACTGCATCACATGGCAAGCGTCAACATGAAA
TCATGGTGGGAAGAGGAAGGCCAAAGAACATATTGAGTGCAGAATCGGAAGCAGATCAAA
AGCATGAATAACAATTAGAAAGAATTGTTGAGGACAGAGTTGAACGGGAAATGCTAGTGG
GTGGCCTATGCTTCTCTACGTGAGGTAACAGGCATAGTTAACTATGTAATTAAGCAATCA
AATACTGTTTTTTCCTACGTAGTTATCTACGTTTTTTGTACTAAATATATCGAGAACATC
AAGCAAATTGAAGTCACGCGCTATGTAAACCTCTGGAATAGATTACCAGTAGACATCCGG
TCAAGCCAAACGCTTATTCAATTTAAATCCTTCCTTAACCGCTTTATGGACCGATTCCCA
CATGTTCCCACATGTTCGATGGAGATTACCTAAACCAACCTGCATTTGACAATGGTCCAT
CCAACATCTAACCGACTGACATTTGATAGCCATGCCACAAACTGAGATCATTTGACGCCG
AATAGCCTCTGAAACTTTAC

consensusID : consensus_5804#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 471
fasta sequence

                              [TTCTCACAGCCATCATCAAAAACGTACAAGTATTTATAAACAAATGTCAAAGTAAGATACTCAATGTCTGTTCACCAGATACCATCAGGAACAACCTACTGTAGGAGAGAACAGACCAGCTTCCAACTGAGCAAATTACGAAAAGACGTTGGAAGTAAATAGGACATACTTTATGGAACTCATGAGACTGCATCACATGGCAAGCGTCAACATGGAATCATGGTGGGAAGAGGAAGGCCAAAGAACATATTGAGTGCAGAATCGGAAGCAGATCAAAAGCATGAATAACAATTAGAAAGAATTGTTGAGGACAGAGTTGAACGGGAAATGCTAGTGGGTGGCCTATGCTTCTCTACGTGAGGTAACAGGCATAGTTAACTATGTAATTAAGCAATCAAATACTGTTTTTTCCTACGTAGTTATCTACGTTTTTTGTACTAAATATATCGAGAACATCAAGCAAATTGAAGT]

[-] EMBL CD141110             [TTCTCACAGCCATCATCAAAAACGTACAAGTATTTATAAACAAATGTCAAAGTAAGATACTCAATGTCTGTTCACCAGATACCATCAGGAACAACCTACTGTAGGAGAGAACAGACCAGCTTCCAACTGAGCAAATTACGAAAAGACGTTGGAAGTAAATAGGACATACTTTATGGAACTCATGAGACTGCATCACATGGCAAGCGTCAACATGGA                                                                                                                                                                                                                                                               ]
[+] EMBL CD096150             [                                                                                                                                 AGCAAATTACGAAAAGACGTTGGAAGTAAATAGGACATACTTTATGGAAATCATGAAACTGCATCACATGGCAAGCGTCAACATGGAATCATGGTGGGAAGAGGAAGGCCAAAGAACATATTGAGTGCAGAATCGGAAGCAGATCAAAAGCATGAATAACAATTAGAAAGAATTGTTGAGGACAGAGTTGAACGGGAAATGCTAGTGGGTGGCCTATGCTTCTCTACGTGAGGTAACAGGCATAGTTAACTATGTAATTAAGCAATCAAATACTGTTTTTTCCTACGTAGTTATCTACGTTTTTTGTACTAAATATATCGAGAACATCAAGCAAATTGAAGT]




>consensus_5804#1
TTCTCACAGCCATCATCAAAAACGTACAAGTATTTATAAACAAATGTCAAAGTAAGATAC
TCAATGTCTGTTCACCAGATACCATCAGGAACAACCTACTGTAGGAGAGAACAGACCAGC
TTCCAACTGAGCAAATTACGAAAAGACGTTGGAAGTAAATAGGACATACTTTATGGAACT
CATGAGACTGCATCACATGGCAAGCGTCAACATGGAATCATGGTGGGAAGAGGAAGGCCA
AAGAACATATTGAGTGCAGAATCGGAAGCAGATCAAAAGCATGAATAACAATTAGAAAGA
ATTGTTGAGGACAGAGTTGAACGGGAAATGCTAGTGGGTGGCCTATGCTTCTCTACGTGA
GGTAACAGGCATAGTTAACTATGTAATTAAGCAATCAAATACTGTTTTTTCCTACGTAGT
TATCTACGTTTTTTGTACTAAATATATCGAGAACATCAAGCAAATTGAAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5804#0      ------------------------------------------------------------
consensus_5804#1      TTCTCACAGCCATCATCAAAAACGTACAAGTATTTATAAACAAATGTCAAAGTAAGATAC 60
                                                                                  

consensus_5804#0      ------------------------------------------------------------
consensus_5804#1      TCAATGTCTGTTCACCAGATACCATCAGGAACAACCTACTGTAGGAGAGAACAGACCAGC 120
                                                                                  

consensus_5804#0      ------------------------------------CCTCTGGNCA-AGGGTGGNAAATC 23
consensus_5804#1      TTCCAACTGAGCAAATTACGAAAAGACGTTGGAAGTAAATAGGACATACTTTATGGAACT 180
                                                               ** ** *   *    **  

consensus_5804#0      AGGGAAACTGCATCACATGGCAAGCGTCAACATGAAATCATGGTGGGAAGAGGAAGGCCA 83
consensus_5804#1      CATGAGACTGCATCACATGGCAAGCGTCAACATGGAATCATGGTGGGAAGAGGAAGGCCA 240
                         ** **************************** *************************

consensus_5804#0      AAGAACATATTGAGTGCAGAATCGGAAGCAGATCAAAAGCATGAATAACAATTAGAAAGA 143
consensus_5804#1      AAGAACATATTGAGTGCAGAATCGGAAGCAGATCAAAAGCATGAATAACAATTAGAAAGA 300
                      ************************************************************

consensus_5804#0      ATTGTTGAGGACAGAGTTGAACGGGAAATGCTAGTGGGTGGCCTATGCTTCTCTACGTGA 203
consensus_5804#1      ATTGTTGAGGACAGAGTTGAACGGGAAATGCTAGTGGGTGGCCTATGCTTCTCTACGTGA 360
                      ************************************************************

consensus_5804#0      GGTAACAGGCATAGTTAACTATGTAATTAAGCAATCAAATACTGTTTTTTCCTACGTAGT 263
consensus_5804#1      GGTAACAGGCATAGTTAACTATGTAATTAAGCAATCAAATACTGTTTTTTCCTACGTAGT 420
                      ************************************************************

consensus_5804#0      TATCTACGTTTTTTGTACTAAATATATCGAGAACATCAAGCAAATTGAAGTCACGCGCTA 323
consensus_5804#1      TATCTACGTTTTTTGTACTAAATATATCGAGAACATCAAGCAAATTGAAGT--------- 471
                      ***************************************************         

consensus_5804#0      TGTAAACCTCTGGAATAGATTACCAGTAGACATCCGGTCAAGCCAAACGCTTATTCAATT 383
consensus_5804#1      ------------------------------------------------------------
                                                                                  

consensus_5804#0      TAAATCCTTCCTTAACCGCTTTATGGACCGATTCCCACATGTTCCCACATGTTCGATGGA 443
consensus_5804#1      ------------------------------------------------------------
                                                                                  

consensus_5804#0      GATTACCTAAACCAACCTGCATTTGACAATGGTCCATCCAACATCTAACCGACTGACATT 503
consensus_5804#1      ------------------------------------------------------------
                                                                                  

consensus_5804#0      TGATAGCCATGCCACAAACTGAGATCATTTGACGCCGAATAGCCTCTGAAACTTTAC 560
consensus_5804#1      ---------------------------------------------------------