cluster # 5805

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Schistosoma mansoni
cluster # 5805 cluster # 5805 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5805#0 length = 837 sequences # 2

consensus_5805#1 length = 450 sequences # 1

consensusID : consensus_5805#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 837
fasta sequence

                              [GAGGACCACAGGACCGTATCCCGTCAGAGATAAGTGGCTGAAAAAACCCGAAAACATCGCCTCTTAGCCCATAACTGTTTATGTTCGTTAAAACAATGCTACTCTAGTTATCTGCGATGCGAAGTGCGATGAATAAACTTCAACAACTTATGGATGAAAATGTAGAAGCTATAAGATTAATGCCTACAACGTTCTTGGTAATTGGAGTATATCTTCTCGGGAGACATTTTTATATCTTTACCAAATTCAATTCCATATATTCGATTCCATCTGGTGTATACAGCCGCCAGATACATCTAAAAGGTTTGGTTAAATCTATCAATTCTACCGGCGAATTGGAGGTTTTCCATGTGCCCAAGGTTAAACTACCTTTCCAAGTTTCATATGGTACGTTGTTCTCTAAAGGATTACATTACAGGTAATGCTATAAAGATTTGTATTCCTGTGCAGCATTCTGGACAAAGTATACAATGGTTACAGCAAAATATACACCCAGGTGAACGTGTCGTTTTCATCCCTGTAAAACCAATTTTTGAGGATTCGGAACTATTGGCCATAATTTACAAACGAGTAACTTACTATTCTTGTATATAGTTGCAGTGTTGTGTTTTTAAAAAAGATATATCTTACCACTTATTAGTTAATGGAATAGCCAACCACANAAGCTTCAATGATTTGCCATATAACTTTCGCAATAAGTACTCCTCAGCTATTGCGAAAAGC-ATCCGAAATG-AACGAGGTATTTGGCAGAAAGACTAT-AAGTTGGGAAATTTTGT-AATNTTT-CAGAAGAT-AAACGACTCGTG-ACTTAT-AAAC-TGC-ATCTAG-CATGT--ATATATAGTT]

[+] EMBL CD082113             [GAGGACCACAGGACCGTATCCCGTCAGAGATAAGTGGCTGAAAAAACCCGAAAACATCGCCTCTTAGCCCATAACTGTTTATGTTCGTTAAAACAATGCTACTCTAGTTATCTGCGATGCGAAGTGCGATGAATAAACTTCAACAACTTATGGATGAAAATGTAGAAGCTATAAGATTAATGCCTACAACGTTCTTGGTAATTGGAGTATATCTTCTCGGGAGACATTTTTATATCTTTACCAAATTCAATTCCATATATTCGATTCCATCTGGTGTATACAGCCGCCAGATACATCTAAAAGGTTTGGTTAAATCTATCAATTCTACCGGCGAATTGGAGGTTTTCCATGTGCCCAAGGTTAAACTACCTTTCCAAGTTTCATATGGTACGTTGTTCTCTAAAGGATTACATTACAGGTAATGCTATAAAGATTTGTATTCCTGTGCAGCATTCTGGACAAAGTATACAATGGTTACAGCAAAATATACACCCAGGTGAACGTGTCGTTTTCATCCCTGTAAAACCAATTTTTGAGGATTCGGAACTATTGGCCATAATTTACAAACGAGTAACTTACTATTCTTGTATATAGTTGCAGTGTTGTGTTTTTAAAAAAGATATATCTTACCACTTATTAGTTAATGGAATAGCCAACCACANAAGCTTCAATGATTTGCCATATAACTTTCGCAATAAGTACTCCTCAGCTATTGCGAAAAGC ATCCGAAATG AACGAGGTATTTGGCAGAAAGACTAT AAGTTGGGAAATTTTGT AATNTTT CAGAAGAT AAACGACTCGTG ACTTAT AAAC TGC ATCTAG CATGT  ATATATA   ]
[-] EMBL CD075729             [                                                                                                                                                                                                                                                      TCAATTCCATATATTCGATTCCATCTGGTGTATACAGCCGCCAGATACATCTAAAAGGTTTGGTTAAATCTATCAATTCTACCGGCGAATTGGAGGTTTTCCATGTGCCCAAGGTTAAACTACCTTTCCAAGTTTCATATGGTACGTTGTTCTCTAAAGGATTACATTACAGGTAATGCTATAAAGATTTGTATTCCTGTGCAGCATTCTGGACAAAGTATACAATGGTTACAGCAAAATATACACCCAGGTGAACGTGTCGTTTTCATCCCTGTAAAACCAATTTTTGAGGATTCGGAACTATTGGCCATAATTTACAAACGAGTAACTTACTATTCTTGTATATAGTTGCAGTGTTGTGTTTTTAAAAAAGATATATCTTACCACTTATTAGTTAATGGAATAGCCAACCACAAAAGCTTCAATGATTTGCCATATAACTTTCGCAATAAGTACTCCTCAGCTATTGCG AAAGCAATCCG AATGAAACGAGGTATTTGGCAAGAAGACTATAAAGTTTGGAAATTTTGTAAATTTTTCCAGAAGATAAAACGACTCGTGAACTTATAAAACTTGCAATCTAGTCATGTTAATATATAGTT]




>consensus_5805#0
GAGGACCACAGGACCGTATCCCGTCAGAGATAAGTGGCTGAAAAAACCCGAAAACATCGC
CTCTTAGCCCATAACTGTTTATGTTCGTTAAAACAATGCTACTCTAGTTATCTGCGATGC
GAAGTGCGATGAATAAACTTCAACAACTTATGGATGAAAATGTAGAAGCTATAAGATTAA
TGCCTACAACGTTCTTGGTAATTGGAGTATATCTTCTCGGGAGACATTTTTATATCTTTA
CCAAATTCAATTCCATATATTCGATTCCATCTGGTGTATACAGCCGCCAGATACATCTAA
AAGGTTTGGTTAAATCTATCAATTCTACCGGCGAATTGGAGGTTTTCCATGTGCCCAAGG
TTAAACTACCTTTCCAAGTTTCATATGGTACGTTGTTCTCTAAAGGATTACATTACAGGT
AATGCTATAAAGATTTGTATTCCTGTGCAGCATTCTGGACAAAGTATACAATGGTTACAG
CAAAATATACACCCAGGTGAACGTGTCGTTTTCATCCCTGTAAAACCAATTTTTGAGGAT
TCGGAACTATTGGCCATAATTTACAAACGAGTAACTTACTATTCTTGTATATAGTTGCAG
TGTTGTGTTTTTAAAAAAGATATATCTTACCACTTATTAGTTAATGGAATAGCCAACCAC
ANAAGCTTCAATGATTTGCCATATAACTTTCGCAATAAGTACTCCTCAGCTATTGCGAAA
AGCATCCGAAATGAACGAGGTATTTGGCAGAAAGACTATAAGTTGGGAAATTTTGTAATN
TTTCAGAAGATAAACGACTCGTGACTTATAAACTGCATCTAGCATGTATATATAGTT

consensusID : consensus_5805#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 450
fasta sequence

                              [GAGGGCGAAGCTGCGATTGAATAAACTTCAACAGCTTATGGATGAAAATGTAGAAGCTATAAGATTAATGCCTACAACGTTCTTGGTAATTGGAGTATATCTTCTCGGGAGACATTTTTATATCGTAAATAAAGATGGTTTATGCGTATATTCATTCAGTTTACCAAATTCAATTCCATATATTCGATTCCATCTGGTGTATACAGCCGCCAGATACATCTAAAAGGTTTGGTTAAATCTATCAATTCTACCGGCGAATTGGAGGTTTTCCATGTGCCCAAGGTTAAACTACCTTTCCAAGTTTCATATGGTAATGCTATAAAGATTTGTATTCCTGTGCAGCATTCTGGACAAAGTATACAATGGTTACAGCAAAATATACACCCAGTGTGAACGTGTCGTTCTCATCCCTGTAAAACCAATTTTTGAGGATTCGGAACTATTGGCCAT]

[+] EMBL CD083690             [GAGGGCGAAGCTGCGATTGAATAAACTTCAACAGCTTATGGATGAAAATGTAGAAGCTATAAGATTAATGCCTACAACGTTCTTGGTAATTGGAGTATATCTTCTCGGGAGACATTTTTATATCGTAAATAAAGATGGTTTATGCGTATATTCATTCAGTTTACCAAATTCAATTCCATATATTCGATTCCATCTGGTGTATACAGCCGCCAGATACATCTAAAAGGTTTGGTTAAATCTATCAATTCTACCGGCGAATTGGAGGTTTTCCATGTGCCCAAGGTTAAACTACCTTTCCAAGTTTCATATGGTAATGCTATAAAGATTTGTATTCCTGTGCAGCATTCTGGACAAAGTATACAATGGTTACAGCAAAATATACACCCAGTGTGAACGTGTCGTTCTCATCCCTGTAAAACCAATTTTTGAGGATTCGGAACTATTGGCCAT]




>consensus_5805#1
GAGGGCGAAGCTGCGATTGAATAAACTTCAACAGCTTATGGATGAAAATGTAGAAGCTAT
AAGATTAATGCCTACAACGTTCTTGGTAATTGGAGTATATCTTCTCGGGAGACATTTTTA
TATCGTAAATAAAGATGGTTTATGCGTATATTCATTCAGTTTACCAAATTCAATTCCATA
TATTCGATTCCATCTGGTGTATACAGCCGCCAGATACATCTAAAAGGTTTGGTTAAATCT
ATCAATTCTACCGGCGAATTGGAGGTTTTCCATGTGCCCAAGGTTAAACTACCTTTCCAA
GTTTCATATGGTAATGCTATAAAGATTTGTATTCCTGTGCAGCATTCTGGACAAAGTATA
CAATGGTTACAGCAAAATATACACCCAGTGTGAACGTGTCGTTCTCATCCCTGTAAAACC
AATTTTTGAGGATTCGGAACTATTGGCCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5805#0      GAGGACCACAGGACCGTATCCCGTCAGAGATAAGTGGCTGAAAAAACCCGAAAACATCGC 60
consensus_5805#1      ------------------------------------------------------------
                                                                                  

consensus_5805#0      CTCTTAGCCCATAACTGTTTATGTTCGTTAAAACAATGCTACTCTAGTTATCTGCGATGC 120
consensus_5805#1      ------------------------------------------------------GAGGGC 6
                                                                                **

consensus_5805#0      GAAG-TGCGAT-GAATAAACTTCAACAACTTATGGATGAAAATGTAGAAGCTATAAGATT 178
consensus_5805#1      GAAGCTGCGATTGAATAAACTTCAACAGCTTATGGATGAAAATGTAGAAGCTATAAGATT 66
                      **** ****** *************** ********************************

consensus_5805#0      AATGCCTACAACGTTCTTGGTAATTGGAGTATATCTTCTCGGGAGACATTTTTATATC-- 236
consensus_5805#1      AATGCCTACAACGTTCTTGGTAATTGGAGTATATCTTCTCGGGAGACATTTTTATATCGT 126
                      **********************************************************  

consensus_5805#0      ---------------------------------TTTACCAAATTCAATTCCATATATTCG 263
consensus_5805#1      AAATAAAGATGGTTTATGCGTATATTCATTCAGTTTACCAAATTCAATTCCATATATTCG 186
                                                       ***************************

consensus_5805#0      ATTCCATCTGGTGTATACAGCCGCCAGATACATCTAAAAGGTTTGGTTAAATCTATCAAT 323
consensus_5805#1      ATTCCATCTGGTGTATACAGCCGCCAGATACATCTAAAAGGTTTGGTTAAATCTATCAAT 246
                      ************************************************************

consensus_5805#0      TCTACCGGCGAATTGGAGGTTTTCCATGTGCCCAAGGTTAAACTACCTTTCCAAGTTTCA 383
consensus_5805#1      TCTACCGGCGAATTGGAGGTTTTCCATGTGCCCAAGGTTAAACTACCTTTCCAAGTTTCA 306
                      ************************************************************

consensus_5805#0      TATGGTACGTTGTTCTCTAAAGGATTACATTACAGGTAATGCTATAAAGATTTGTATTCC 443
consensus_5805#1      TATG-------------------------------GTAATGCTATAAAGATTTGTATTCC 335
                      ****                               *************************

consensus_5805#0      TGTGCAGCATTCTGGACAAAGTATACAATGGTTACAGCAAAATATACACCCAG-GTGAAC 502
consensus_5805#1      TGTGCAGCATTCTGGACAAAGTATACAATGGTTACAGCAAAATATACACCCAGTGTGAAC 395
                      ***************************************************** ******

consensus_5805#0      GTGTCGTTTTCATCCCTGTAAAACCAATTTTTGAGGATTCGGAACTATTGGCCATAATTT 562
consensus_5805#1      GTGTCGTTCTCATCCCTGTAAAACCAATTTTTGAGGATTCGGAACTATTGGCCAT----- 450
                      ******** **********************************************     

consensus_5805#0      ACAAACGAGTAACTTACTATTCTTGTATATAGTTGCAGTGTTGTGTTTTTAAAAAAGATA 622
consensus_5805#1      ------------------------------------------------------------
                                                                                  

consensus_5805#0      TATCTTACCACTTATTAGTTAATGGAATAGCCAACCACANAAGCTTCAATGATTTGCCAT 682
consensus_5805#1      ------------------------------------------------------------
                                                                                  

consensus_5805#0      ATAACTTTCGCAATAAGTACTCCTCAGCTATTGCGAAAAGCATCCGAAATGAACGAGGTA 742
consensus_5805#1      ------------------------------------------------------------
                                                                                  

consensus_5805#0      TTTGGCAGAAAGACTATAAGTTGGGAAATTTTGTAATNTTTCAGAAGATAAACGACTCGT 802
consensus_5805#1      ------------------------------------------------------------
                                                                                  

consensus_5805#0      GACTTATAAACTGCATCTAGCATGTATATATAGTT 837
consensus_5805#1      -----------------------------------