cluster # 581

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Schistosoma mansoni
cluster # 581 cluster # 581 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_581#0 length = 410 sequences # 1

consensus_581#1 length = 223 sequences # 1

consensusID : consensus_581#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence

                              [GTCATAAACGTCGTCCTCAATCTCCGTCTGCACACACTCCTCCTCCACAGCAGCAGTGTTCGGTCCACGACTCTCCACGTACATCGCCGACACCTCTTCCTTCCTCTCCAACACATCCACATTGGCACGCATAATGTCCAAATCACGTCGTTCTGCCTCCACAGTCTCCCTCAACTCATTCACTTCGTCTCGCAAATGACGCTTCTCTTCTCTCAGATCCGCAACTTCACTCTCCTTCACAGGTAACAAACGCCGAACATGCATCAACGAAGCATCACTCTGCTGAACCGATTTAGACCGCTTCACTATCTGTTCATAACAAGACGCCAACTCTTCACGCAGATGGGCAACCTCGACCTGCAGAGACGACACTAGGTCATAAACGTCGTCCTCAATCTGCGTCTGCACAC]

[+] EMBL CD087247             [GTCATAAACGTCGTCCTCAATCTCCGTCTGCACACACTCCTCCTCCACAGCAGCAGTGTTCGGTCCACGACTCTCCACGTACATCGCCGACACCTCTTCCTTCCTCTCCAACACATCCACATTGGCACGCATAATGTCCAAATCACGTCGTTCTGCCTCCACAGTCTCCCTCAACTCATTCACTTCGTCTCGCAAATGACGCTTCTCTTCTCTCAGATCCGCAACTTCACTCTCCTTCACAGGTAACAAACGCCGAACATGCATCAACGAAGCATCACTCTGCTGAACCGATTTAGACCGCTTCACTATCTGTTCATAACAAGACGCCAACTCTTCACGCAGATGGGCAACCTCGACCTGCAGAGACGACACTAGGTCATAAACGTCGTCCTCAATCTGCGTCTGCACAC]




>consensus_581#0
GTCATAAACGTCGTCCTCAATCTCCGTCTGCACACACTCCTCCTCCACAGCAGCAGTGTT
CGGTCCACGACTCTCCACGTACATCGCCGACACCTCTTCCTTCCTCTCCAACACATCCAC
ATTGGCACGCATAATGTCCAAATCACGTCGTTCTGCCTCCACAGTCTCCCTCAACTCATT
CACTTCGTCTCGCAAATGACGCTTCTCTTCTCTCAGATCCGCAACTTCACTCTCCTTCAC
AGGTAACAAACGCCGAACATGCATCAACGAAGCATCACTCTGCTGAACCGATTTAGACCG
CTTCACTATCTGTTCATAACAAGACGCCAACTCTTCACGCAGATGGGCAACCTCGACCTG
CAGAGACGACACTAGGTCATAAACGTCGTCCTCAATCTGCGTCTGCACAC

consensusID : consensus_581#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 223
fasta sequence

                              [TTATGCTTGATAGCATTGTGCCACTACAGGAGTCTAATGAAGTTACGTCGATGCAGAGAGGAAGAGATTGGGATTCGGTAAATGAGATGAGCAGACTGTGTGACACCAATCGTGAGCTGTCTGAGGAGCTCTGCTGCTGTGGAGGAGGAGTGTGTGCAGACGGAGATTGAGGACGACGTTTATGACCTAGTGTCGTCTCTGCAGGTCGAGGGTTTTCATTTTT]

[+] EMBL CD188399             [TTATGCTTGATAGCATTGTGCCACTACAGGAGTCTAATGAAGTTACGTCGATGCAGAGAGGAAGAGATTGGGATTCGGTAAATGAGATGAGCAGACTGTGTGACACCAATCGTGAGCTGTCTGAGGAGCTCTGCTGCTGTGGAGGAGGAGTGTGTGCAGACGGAGATTGAGGACGACGTTTATGACCTAGTGTCGTCTCTGCAGGTCGAGGGTTTTCATTTTT]




>consensus_581#1
TTATGCTTGATAGCATTGTGCCACTACAGGAGTCTAATGAAGTTACGTCGATGCAGAGAG
GAAGAGATTGGGATTCGGTAAATGAGATGAGCAGACTGTGTGACACCAATCGTGAGCTGT
CTGAGGAGCTCTGCTGCTGTGGAGGAGGAGTGTGTGCAGACGGAGATTGAGGACGACGTT
TATGACCTAGTGTCGTCTCTGCAGGTCGAGGGTTTTCATTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_581#0      GTCATAAACGTCGTCCTCAATCTCCGTCTGCACACACTCCTCCTCCACAGCAGCAGTGTT 60
consensus_581#1      ------------------------------------------------------------
                                                                                 

consensus_581#0      CGGTCCACGACTCTCCACGTACATCGCCGACACCTCTTCCTTCCTCTCCAACACATCCAC 120
consensus_581#1      ------------------------------------------------------------
                                                                                 

consensus_581#0      ATTGGCACGCATAATGTCCAAATCACGTCGTTCTGCCTCCACAGTCTCCCTCAACTCATT 180
consensus_581#1      -----------TTATGCTTGA-TAGCATTGTGCCACTACAGGAGTCTAATGAAGTTACGT 48
                                * ***    * *  * * ** *  *  *   *****     *  *   *

consensus_581#0      CACTTCGTCTCGCAAATGAC--GCTTCTCTTCTCTCAGATCCGCAACTTCACTCTCCTTC 238
consensus_581#1      CGATGCAGAGAGGAAGAGATTGGGATTCGGTAAATGAGATGAGCAGACTGTGTGACACCA 108
                     *  * *     * **  **   *  *    *   * ****  ***   *   *  *    

consensus_581#0      ACAGGTAACAAACGCCGAA--CATGCATCAACGAAGCATCACTCTGCTGAACCGATTTAG 296
consensus_581#1      ATCGTGAGCTGTCTGAGGAGCTCTGCTGCTGTGGAGGAGGAGTGTGT---GCAGACGGAG 165
                     *  *  * *   *   * *    ***  *   * ** *  * * **     * **   **

consensus_581#0      ACCGCTTCACTATCTGTTCATAACAAGACGCCAACTCTTCACGCAGATGGGCAACCTCGA 356
consensus_581#1      ATTGAGG-ACGA--CGTTTATGACCTAGTGTCGTCTCT----GCAGGTCGAGGGTTTTCA 218
                     *  *    ** *   *** ** **     * *  ****    **** * *      *  *

consensus_581#0      CCTGCAGAGACGACACTAGGTCATAAACGTCGTCCTCAATCTGCGTCTGCACAC 410
consensus_581#1      TTTTT------------------------------------------------- 223
                       *