cluster # 5817

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Schistosoma mansoni
cluster # 5817 cluster # 5817 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5817#0 length = 681 sequences # 2

consensus_5817#1 length = 620 sequences # 1

consensusID : consensus_5817#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 681
fasta sequence

                              [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTGTAATACTAAAGCATATATTTAAGGCATACAGGCGCAGTCTTAATTATTACATCATGCACTACACACAGAAAAAAATAGTTTCTTTCTAGAAAAAACAAATCAAAATTCATGAAAGCAACATAAATACACTAAATCTTTTTAACTATTTAAGTAAAAACGAAATTGAGAAGAAAAGCGAAGAACACGCTGTAGCTCAACAAAGAAATGAGTGAAAGAAAAAAAAGAAACTGGTAAATTGTTTCCTATTTCTTCAATTTTCATTCTTTTAGAATACAACAACGAAAAGATATCATTGACAAGTTATGATTGATGTTCCAACAAAAGAATAACCCACAAAGAATTGTGCTAATTACATTTCACTTTAATTAAACATGCACATGGTAAGAGTTCAACTGCAATAATCACTGTTTCATTTAGGTCTATTGTATTTTTCTTTACGATAAATCCATTTATCATTCTGATAATTTTCCATAAAATCTACGATAACGATCATCTACATTCTTTAAATAATATGAACCAGGAAATAGTCCTTCAGGTCGAAATGTTGGTTCAAATGGAGCTGAA-TATGTGAAAGTTGTCGTTCTTTAAGCATTAGTTCAAATTGAGAAACAGTCACTTGAGT]

[+] EMBL BF936958             [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTGTAATACTAAAGCATATATTTAAGGCATACAGGCGCAGTCTTAATTATTACATCATGCACTACACACAGAAAAAAATAGTTTCTTTCTAGAAAAAACAAATCAAAATTCATGAAAGCAACATAAATACACTAAATCTTTTTAACTATTTAAGTAAAAACGAAATTGAGAAGAAAAGCGAAGAACACGCTGTAGCTCAACAAAGAAATGAGTGAAAGAAAAAAAAGAAACTGGTAAATTGTTTCCTATTTCTTCAATTTTCATTCTTTTAGAATACAACAACGAAAAGATATCATTGACAAGTTATGATTGATGTTCCAACAAAAGAATAACCCACAAAGAATTGTGCTAATTACATTTCACTTTAATTAAACATGCACATGGTAAGAGTTCAACTGCAATAATCACTGTTTCATTTAGGTCTATTGTATTTTTCTTTACGATAAATCCATTTATCATTCTGATAATTTTCCATAAAATCTACGATAACGATCATCTACATTCTTTAAATAATATGAACCAGGAAATAGTCCTTCAGGTCGAAATGTTGGTTCAAATGGAGCTGAA TATGTGAAAGTTGTCGTT                                        ]
[-] EMBL CD197753             [                                                                                                                                                                                                                                   AGAAAAGCGAAGAACACGCTGTAGCTCAACAAAGAAATGAGTGAAAGAAAAAAAAGAAACTGGTAAATTGTTTCCTATTTCTTCAATTTTCATTCTTTTAGAATACAACAACGAAAAGATATCATTGACAAGTTATGATTGATGTTCCAACAAAAGAATAACCCACAAAGAATTGTGCTAATTACATTTCACTTTAATTAAACATGCACATGGTAAGAGTTCAACTGCAATAATCACTGTTTCATTTAGGTCTATTGTATTTTTCTTTACGATAAATCCATTTATCATTCTGATAATTTTCCATAAAATCTACGATAACGATCATCTACATTCTTTAAATAATATGAACCAGGAAATAGTCCTTCAGGTCGAAATGTTGGTTCAAATGGAGCTGAATTATGTGAAAGTTGTCGTTCTTTAAGCATTAGTTCAAATTGAGAAACAGTCACTTGAGT]




>consensus_5817#0
TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTGT
AATACTAAAGCATATATTTAAGGCATACAGGCGCAGTCTTAATTATTACATCATGCACTA
CACACAGAAAAAAATAGTTTCTTTCTAGAAAAAACAAATCAAAATTCATGAAAGCAACAT
AAATACACTAAATCTTTTTAACTATTTAAGTAAAAACGAAATTGAGAAGAAAAGCGAAGA
ACACGCTGTAGCTCAACAAAGAAATGAGTGAAAGAAAAAAAAGAAACTGGTAAATTGTTT
CCTATTTCTTCAATTTTCATTCTTTTAGAATACAACAACGAAAAGATATCATTGACAAGT
TATGATTGATGTTCCAACAAAAGAATAACCCACAAAGAATTGTGCTAATTACATTTCACT
TTAATTAAACATGCACATGGTAAGAGTTCAACTGCAATAATCACTGTTTCATTTAGGTCT
ATTGTATTTTTCTTTACGATAAATCCATTTATCATTCTGATAATTTTCCATAAAATCTAC
GATAACGATCATCTACATTCTTTAAATAATATGAACCAGGAAATAGTCCTTCAGGTCGAA
ATGTTGGTTCAAATGGAGCTGAATATGTGAAAGTTGTCGTTCTTTAAGCATTAGTTCAAA
TTGAGAAACAGTCACTTGAGT

consensusID : consensus_5817#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 620
fasta sequence

                              [AGAATAATAACATTAAATCTTTATTAGGCCATACAAATATTGCATAAACAAAGGTTTTCATACTAAAACGGAATGAGAATAAAGATCTGTTTGTAATACTAAAGCATATATTTAAGGCATACAGGCGCAGTCTTAATTATTACATCATGCACTACACACAGAAAAAAATAGTTTCTTTCTAGAAAAAACAAATCAAAATTCATGAAAGCAACATAAATACACTAAATCTTTTTAACTATTTAAGTAAAAACGAAATTGAGAAGAAAAGCGAAGAACACGCTGTAGCTCAACAAAGAAATGAGTGAAAGAAAAAAAAGAAACTGGTAAATTGTTTCCTATTTCTTCAATTTTCATTCTTTTAGAATACAACAACGAAAAGATATCATTGACAAGTTATGATTGATGTTCCAACAAAAGAATAACCCACAAAGAATTGTGCTAATTACATTTCACTTTAATTAAACATGCACATGGTAAGAGTTCAACTGCAATAATCACTGTTTCATTTAGGTCTATTGTATTTTTCTTTACGATAAATCCATTTATCATTCTGATAATTTTCCATAAAATCTACGATAACGATCATCTACATTCTTTAAATAATATGAACCAGGAAATAG]

[+] EMBL CD075968             [AGAATAATAACATTAAATCTTTATTAGGCCATACAAATATTGCATAAACAAAGGTTTTCATACTAAAACGGAATGAGAATAAAGATCTGTTTGTAATACTAAAGCATATATTTAAGGCATACAGGCGCAGTCTTAATTATTACATCATGCACTACACACAGAAAAAAATAGTTTCTTTCTAGAAAAAACAAATCAAAATTCATGAAAGCAACATAAATACACTAAATCTTTTTAACTATTTAAGTAAAAACGAAATTGAGAAGAAAAGCGAAGAACACGCTGTAGCTCAACAAAGAAATGAGTGAAAGAAAAAAAAGAAACTGGTAAATTGTTTCCTATTTCTTCAATTTTCATTCTTTTAGAATACAACAACGAAAAGATATCATTGACAAGTTATGATTGATGTTCCAACAAAAGAATAACCCACAAAGAATTGTGCTAATTACATTTCACTTTAATTAAACATGCACATGGTAAGAGTTCAACTGCAATAATCACTGTTTCATTTAGGTCTATTGTATTTTTCTTTACGATAAATCCATTTATCATTCTGATAATTTTCCATAAAATCTACGATAACGATCATCTACATTCTTTAAATAATATGAACCAGGAAATAG]




>consensus_5817#1
AGAATAATAACATTAAATCTTTATTAGGCCATACAAATATTGCATAAACAAAGGTTTTCA
TACTAAAACGGAATGAGAATAAAGATCTGTTTGTAATACTAAAGCATATATTTAAGGCAT
ACAGGCGCAGTCTTAATTATTACATCATGCACTACACACAGAAAAAAATAGTTTCTTTCT
AGAAAAAACAAATCAAAATTCATGAAAGCAACATAAATACACTAAATCTTTTTAACTATT
TAAGTAAAAACGAAATTGAGAAGAAAAGCGAAGAACACGCTGTAGCTCAACAAAGAAATG
AGTGAAAGAAAAAAAAGAAACTGGTAAATTGTTTCCTATTTCTTCAATTTTCATTCTTTT
AGAATACAACAACGAAAAGATATCATTGACAAGTTATGATTGATGTTCCAACAAAAGAAT
AACCCACAAAGAATTGTGCTAATTACATTTCACTTTAATTAAACATGCACATGGTAAGAG
TTCAACTGCAATAATCACTGTTTCATTTAGGTCTATTGTATTTTTCTTTACGATAAATCC
ATTTATCATTCTGATAATTTTCCATAAAATCTACGATAACGATCATCTACATTCTTTAAA
TAATATGAACCAGGAAATAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5817#0      ------------------------TACGCAGTACGG-TAATGCAGCTGCATGGCATGTTT 35
consensus_5817#1      AGAATAATAACATTAAATCTTTATTAGGCCATACAAATATTGCATAAACAAAGGTTTTCA 60
                                              ** **  ***   ** ****    **  *  * *  

consensus_5817#0      TTTT---------TTTTTTTTTTTTTTTTTTTGTAATACTAAAGCATATATTTAAGGCAT 86
consensus_5817#1      TACTAAAACGGAATGAGAATAAAGATCTGTTTGTAATACTAAAGCATATATTTAAGGCAT 120
                      *  *         *     *     * * *******************************

consensus_5817#0      ACAGGCGCAGTCTTAATTATTACATCATGCACTACACACAGAAAAAAATAGTTTCTTTCT 146
consensus_5817#1      ACAGGCGCAGTCTTAATTATTACATCATGCACTACACACAGAAAAAAATAGTTTCTTTCT 180
                      ************************************************************

consensus_5817#0      AGAAAAAACAAATCAAAATTCATGAAAGCAACATAAATACACTAAATCTTTTTAACTATT 206
consensus_5817#1      AGAAAAAACAAATCAAAATTCATGAAAGCAACATAAATACACTAAATCTTTTTAACTATT 240
                      ************************************************************

consensus_5817#0      TAAGTAAAAACGAAATTGAGAAGAAAAGCGAAGAACACGCTGTAGCTCAACAAAGAAATG 266
consensus_5817#1      TAAGTAAAAACGAAATTGAGAAGAAAAGCGAAGAACACGCTGTAGCTCAACAAAGAAATG 300
                      ************************************************************

consensus_5817#0      AGTGAAAGAAAAAAAAGAAACTGGTAAATTGTTTCCTATTTCTTCAATTTTCATTCTTTT 326
consensus_5817#1      AGTGAAAGAAAAAAAAGAAACTGGTAAATTGTTTCCTATTTCTTCAATTTTCATTCTTTT 360
                      ************************************************************

consensus_5817#0      AGAATACAACAACGAAAAGATATCATTGACAAGTTATGATTGATGTTCCAACAAAAGAAT 386
consensus_5817#1      AGAATACAACAACGAAAAGATATCATTGACAAGTTATGATTGATGTTCCAACAAAAGAAT 420
                      ************************************************************

consensus_5817#0      AACCCACAAAGAATTGTGCTAATTACATTTCACTTTAATTAAACATGCACATGGTAAGAG 446
consensus_5817#1      AACCCACAAAGAATTGTGCTAATTACATTTCACTTTAATTAAACATGCACATGGTAAGAG 480
                      ************************************************************

consensus_5817#0      TTCAACTGCAATAATCACTGTTTCATTTAGGTCTATTGTATTTTTCTTTACGATAAATCC 506
consensus_5817#1      TTCAACTGCAATAATCACTGTTTCATTTAGGTCTATTGTATTTTTCTTTACGATAAATCC 540
                      ************************************************************

consensus_5817#0      ATTTATCATTCTGATAATTTTCCATAAAATCTACGATAACGATCATCTACATTCTTTAAA 566
consensus_5817#1      ATTTATCATTCTGATAATTTTCCATAAAATCTACGATAACGATCATCTACATTCTTTAAA 600
                      ************************************************************

consensus_5817#0      TAATATGAACCAGGAAATAGTCCTTCAGGTCGAAATGTTGGTTCAAATGGAGCTGAATAT 626
consensus_5817#1      TAATATGAACCAGGAAATAG---------------------------------------- 620
                      ********************                                        

consensus_5817#0      GTGAAAGTTGTCGTTCTTTAAGCATTAGTTCAAATTGAGAAACAGTCACTTGAGT 681
consensus_5817#1      -------------------------------------------------------