cluster # 5823

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Schistosoma mansoni
cluster # 5823 cluster # 5823 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5823#0 length = 973 sequences # 2

consensus_5823#1 length = 327 sequences # 1

consensusID : consensus_5823#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 973
fasta sequence

                              [GAGGCCAGAATTCGGCACGAGGGCAATGACGATGCAACGTTGCGGGATAAGTATCAATTCAGAGTCTCTGGTACTGATCTATGAACGAGGCCTTAAAACGAGAAAAAGAAGAATTAGACTTTCTATGCCTCAAAATTCATCAGTCATTGAAACATATAAGGCATTGCTAGCGGATGATCGTCATAAACAGTTCATAAATCTTATTCCTAAGACACAGCTTTTAAGATTATTGACTATCTTCAAAGATTTGTGTAACGGGATGAATATCTCAGATTCTTTAAACAGACGAAAAGAGGTGGACACTAACAATGTTGATTATAGTGCCTTGGAAGGAAATAAGACTGCTATGAATAATTTGTCCGGACGAAATGAAATGCTGCCTACAAAACAAGATTTTACTTCTGATGAAGAAATAGACCTTCCTGAGGAACAAATTGAAACATACTCATGGGATTCTGATGAATGCGAATTTTAAACGTTGTGTGTTTTATATGGTTATGTTTAATGGGAATAACTGTATATAATTAATGTTGTTTATGACTCANAAAAACGTGGAAAATGTTTAATTGCTATGTCTAGATTCAGTATTGTACTCCTGAATACATGAACTGGAGATACGATGACATTCANATGGTTNTTATATGGTGCACTTAAGCTTTATTCGTAAGATAATTTTGATTAAAAATATCCAAGAAAATTTACGACAGAAATGGTCAAATAGGGAAAATAAAATACTCATCAGTAATATATCAAATTCATTGATCATTCGCCAATTATTAATTTGAATCCACCATTACTTGTTATTGTGTACTGTTTAGAATGTTTTTCATTGATTTCCTTAGAACTCATTATTGTTAATACCACTTGAATGTAAATTCATGATTTTTAATTGATTTTCTGCCTTATTAAATAATTTTGTATGAATGTACTTTTCTGATAACAAATACAAAGTACTATAAAATAACAAGCGAAT]

[+] EMBL CD080453             [GAGGCCAGAATTCGGCACGAGGGCAATGACGATGCAACGTTGCGGGATAAGTATCAATTCAGAGTCTCTGGTACTGATCTATGAACGAGGCCTTAAAACGAGAAAAAGAAGAATTAGACTTTCTATGCCTCAAAATTCATCAGTCATTGAAACATATAAGGCATTGCTAGCGGATGATCGTCATAAACAGTTCATAAATCTTATTCCTAAGACACAGCTTTTAAGATTATTGACTATCTTCAAAGATTTGTGTAACGGGATGAATATCTCAGATTCTTTAAACAGACGAAAAGAGGTGGACACTAACAATGTTGATTATAGTGCCTTGGAAGGAAATAAGACTGCTATGAATAATTTGTCCGGACGAAATGAAATGCTGCCTACAAAACAAGATTTTACTTCTGATGAAGAAATAGACCTTCCTGAGGAACAAATTGAAACATACTCATGGGATTCTGATGAATGCGAATTTTAAACGTTGTGTGTTTTATATGGTTATGTTTAATGGGAATAACTGTATATAATTAATGTTGTTTATGACTCANAAAAACGTGGAAAATGTTTAATTGCTATGTCTAGATTCAGTATTGTACTCCTGAATACATGAACTGGAGATACGATGACATTCANATGGTTNTTATATGGTGC                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD074365             [                                                                                                                                                                                                                                                                                                                                                                         GGACGAAATGAAATGCTGCCTACAAAACAAGATTTTACTTCTGATGAAGAAATAGACCTTCCTGAGGAACAAATTGAAACATACTCATGGGATTCTGATGAATGCGAATTTTAAACGTTGTGTGTTTTATATGGTTATGTTTAATGGGAATAACTGTATATAATTAATGTTGTTTATGACTCAAAAAAACGTGGAAAATGTTTAATTGCTATGTCTAGATTCAGTATTGTACTCCTGAATACATGAACTGGAGATACGATGACATTCAAATGGTTTTTATATGGTGCACTTAAGCTTTATTCGTAAGATAATTTTGATTAAAAATATCCAAGAAAATTTACGACAGAAATGGTCAAATAGGGAAAATAAAATACTCATCAGTAATATATCAAATTCATTGATCATTCGCCAATTATTAATTTGAATCCACCATTACTTGTTATTGTGTACTGTTTAGAATGTTTTTCATTGATTTCCTTAGAACTCATTATTGTTAATACCACTTGAATGTAAATTCATGATTTTTAATTGATTTTCTGCCTTATTAAATAATTTTGTATGAATGTACTTTTCTGATAACAAATACAAAGTACTATAAAATAACAAGCGAAT]




>consensus_5823#0
GAGGCCAGAATTCGGCACGAGGGCAATGACGATGCAACGTTGCGGGATAAGTATCAATTC
AGAGTCTCTGGTACTGATCTATGAACGAGGCCTTAAAACGAGAAAAAGAAGAATTAGACT
TTCTATGCCTCAAAATTCATCAGTCATTGAAACATATAAGGCATTGCTAGCGGATGATCG
TCATAAACAGTTCATAAATCTTATTCCTAAGACACAGCTTTTAAGATTATTGACTATCTT
CAAAGATTTGTGTAACGGGATGAATATCTCAGATTCTTTAAACAGACGAAAAGAGGTGGA
CACTAACAATGTTGATTATAGTGCCTTGGAAGGAAATAAGACTGCTATGAATAATTTGTC
CGGACGAAATGAAATGCTGCCTACAAAACAAGATTTTACTTCTGATGAAGAAATAGACCT
TCCTGAGGAACAAATTGAAACATACTCATGGGATTCTGATGAATGCGAATTTTAAACGTT
GTGTGTTTTATATGGTTATGTTTAATGGGAATAACTGTATATAATTAATGTTGTTTATGA
CTCANAAAAACGTGGAAAATGTTTAATTGCTATGTCTAGATTCAGTATTGTACTCCTGAA
TACATGAACTGGAGATACGATGACATTCANATGGTTNTTATATGGTGCACTTAAGCTTTA
TTCGTAAGATAATTTTGATTAAAAATATCCAAGAAAATTTACGACAGAAATGGTCAAATA
GGGAAAATAAAATACTCATCAGTAATATATCAAATTCATTGATCATTCGCCAATTATTAA
TTTGAATCCACCATTACTTGTTATTGTGTACTGTTTAGAATGTTTTTCATTGATTTCCTT
AGAACTCATTATTGTTAATACCACTTGAATGTAAATTCATGATTTTTAATTGATTTTCTG
CCTTATTAAATAATTTTGTATGAATGTACTTTTCTGATAACAAATACAAAGTACTATAAA
ATAACAAGCGAAT

consensusID : consensus_5823#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 327
fasta sequence

                              [TATTTCTTCATCAGAAGTAAAATCTTGTTTTGTAGGCAGCATTTCATTTCGTCCGGACAAATTATTCATAGCAGTCTTATTTCTAGAGAGGAAAGTAGAGAATAAATAATGCAGAACCTAGAGGTAAGATTTCAATTAAGGCAGTAAAGTAATAATAATTTATGGTCGACTAAATTATTCTAAAGCAACTTGTTAGTTTTGGACGTTACTACTAAGTCAGTGGACAGTTATTTTAAATATCTCACAGTTTCAGTCTTTAAAATTTATGGATATGAAATATGGCCATTAAGAGTAAAGGATATTCATAGGTTACTGATTTTCCATCAT]

[+] EMBL CD144219             [TATTTCTTCATCAGAAGTAAAATCTTGTTTTGTAGGCAGCATTTCATTTCGTCCGGACAAATTATTCATAGCAGTCTTATTTCTAGAGAGGAAAGTAGAGAATAAATAATGCAGAACCTAGAGGTAAGATTTCAATTAAGGCAGTAAAGTAATAATAATTTATGGTCGACTAAATTATTCTAAAGCAACTTGTTAGTTTTGGACGTTACTACTAAGTCAGTGGACAGTTATTTTAAATATCTCACAGTTTCAGTCTTTAAAATTTATGGATATGAAATATGGCCATTAAGAGTAAAGGATATTCATAGGTTACTGATTTTCCATCAT]




>consensus_5823#1
TATTTCTTCATCAGAAGTAAAATCTTGTTTTGTAGGCAGCATTTCATTTCGTCCGGACAA
ATTATTCATAGCAGTCTTATTTCTAGAGAGGAAAGTAGAGAATAAATAATGCAGAACCTA
GAGGTAAGATTTCAATTAAGGCAGTAAAGTAATAATAATTTATGGTCGACTAAATTATTC
TAAAGCAACTTGTTAGTTTTGGACGTTACTACTAAGTCAGTGGACAGTTATTTTAAATAT
CTCACAGTTTCAGTCTTTAAAATTTATGGATATGAAATATGGCCATTAAGAGTAAAGGAT
ATTCATAGGTTACTGATTTTCCATCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5823#0      GAGGCCAGAATTCGGCACGAGGGCAATGACGATGCAACGTTGCGGGATAAGTATCAATTC 60
consensus_5823#1      ------------------------------------------------------------
                                                                                  

consensus_5823#0      AGAGTCTCTGGTACTGATCTATGAACGAGGCCTTAAAACGAGAAAAAGAAGAATTAGACT 120
consensus_5823#1      ------------------------------------------------------------
                                                                                  

consensus_5823#0      TTCTATGCCTCAAAATTCATCAGTCATTGAAACATATAAGGCATTGCTAGCGGATGATCG 180
consensus_5823#1      ------------------------------------------------------------
                                                                                  

consensus_5823#0      TCATAAACAGTTCATAAATCTTATTCCTAAGACACAGCTTTTAAGATTATTGACTATCTT 240
consensus_5823#1      ------------------------------------------------------------
                                                                                  

consensus_5823#0      CAAAGATTTGTGTAACGGGATGAATATCTCAGATTCTTTAAACAGACGAAAAGAGGTGGA 300
consensus_5823#1      ------------------------------------------------------------
                                                                                  

consensus_5823#0      CACTAACAATGTTGATTATAGTGCCTTGGAAGGAAATAAGACTGCTATGAATAATTTGTC 360
consensus_5823#1      ------------------------------------------------------------
                                                                                  

consensus_5823#0      CGGACGAAATGAAATGCTGCCTACAAAACAAGATTTTACTTCTGATGAAGAAATAGACCT 420
consensus_5823#1      ------------------------------------------------------------
                                                                                  

consensus_5823#0      TCCTGAGGAACAAATTGAAACATACTCATGGGATTCTGATGAATGCGAATTTTAAACGTT 480
consensus_5823#1      ------------------------------------------------------------
                                                                                  

consensus_5823#0      GTGTGTTTTATATGGTTATGTTTAATGGGAATAACTGTATATAATTAATGTTGTTTATGA 540
consensus_5823#1      ------------------------------------------------------------
                                                                                  

consensus_5823#0      CTCANAAAAACGTGGAAAATGTTTAATTGCTATGTCTAGATTCAGTATTGTACTCCTGAA 600
consensus_5823#1      ------------------------------TATTTCTTCAT-CAGAAGTAAAATCTTGTT 29
                                                    *** ***  ** *** * *  * ** **  

consensus_5823#0      TACATGAACTGGAGATACGATGACATTCANATGGTTNTTATATGGTGCACTTAAGCTTTA 660
consensus_5823#1      T---TGTAGGCAGCATTTCATTTCGTCCGGACAAATTATTCATAGCAGTCTTA---TTTC 83
                      *   ** *      **   **  * * *  *    *  *  ** *    ****   *** 

consensus_5823#0      TTCGTAAGATAATTTTGATTAAAAATATCCAAGAAAATTTACGACAGAAATGGTCAAATA 720
consensus_5823#1      TAGAGAGGAAAGTAGAGAATAAATA-ATGCA---GAACCTAGAGGTAAGAT--TTCAATT 137
                      *    * ** * *   ** **** * ** **    **  **      * **  *  *** 

consensus_5823#0      GGGAAAATAAAATACTCATCAGTAATATATCAAATTCATTGATCATTCGCCAATTATTAA 780
consensus_5823#1      AAGGCAGTAAAGTAATAATAATTTATG-GTCGACTAAATTATTCTAAAGCAACTTGTTAG 196
                        *  * **** ** * ** * * **   ** * *  ***  **    ** * ** *** 

consensus_5823#0      TTTGAATCCACCATTACTT-GTTATTGTGTA-CTGTTTAGAATGTTTTTCA-TTGATTTC 837
consensus_5823#1      TTTTGGAC-GTTACTACTAAGTCAGTGGACAGTTATTTTAAATATCTCACAGTTTCAGTC 255
                      ***    *    * ****  ** * **   *  * ***  *** * *  ** **    **

consensus_5823#0      CTTAGAACTCATTATTGTTAA---TACCACTTGAATGTAAAT--TCATGATTTTTAATTG 892
consensus_5823#1      TTTAAAATTTATGGATATGAAATATGGCCATTAAGAGTAAAGGATATTCATAGGTTACTG 315
                       *** ** * **   * * **   *  *  ** *  *****   *  * **   * * **

consensus_5823#0      ATTTTCTGCCTTATTAAATAATTTTGTATGAATGTACTTTTCTGATAACAAATACAAAGT 952
consensus_5823#1      ATTTTCCATCAT------------------------------------------------ 327
                      ******   * *                                                

consensus_5823#0      ACTATAAAATAACAAGCGAAT 973
consensus_5823#1      ---------------------