cluster # 5826

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 5826 cluster # 5826 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5826#0 length = 758 sequences # 2

consensus_5826#1 length = 704 sequences # 1

consensusID : consensus_5826#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 758
fasta sequence

                              [TGAACGAATCTGCTGAAGGTAACTGGTAGACACAGCATGAGTGAGATTATTGTTAATATGATCATGAGAGCATGAAGATTGAAAGTTAGAGTCAATTTGTCGGAAATTCAGACATGGAAGGATTGATTTCGAATAGTTTGCTTCACAATACTCAGGAAATGGAGTAGATTGAAAGAACTGTGGATCAGATGTGGAACCGAATTTTGAAGGATATGACGTTCTCAGTGCAGGAGAACTTGACCATCGCTTAGTCTGATGAGAACTCGAGAAAAATGTACAAATCGTATACAAGCTTGATGAAGTTGTTTAATGGACTTCACAACTTGAGGATTTGCCTGATACTGCATACTTATTAGGCCTAAGAATATTTGATTGTTCAGTATATTGTCCACTTCTTTCTGGTTAATACGTACATTACTCTTCTCATCATGATCCAAGCTATCAGCGTTACTTTTGCAATGATCATCAGTTTCCGAAACAAAATTAGCATTTGGAA-ATTCATTCAACATCAAACAGTTACTAGCATACTCACCAAAATTACTACTTATTCGATTATGTTCAATTCGATGTTTTTTAGAAAACCTATCACTTTTCTTAGACGGTGAATGTTTTAAAAGTTTATCATTTGAATATGTCTCTTCCTTTTTATCACACCCTTCCTTTCTTCGATCGCGATGCTGCCAATATTTAGAGAATGAATTACAACTGAAGTTTTTCATATTCTTTATAAATTTTAGTCGATGATCATGTGGTCTGCT]

[-] EMBL CD165739             [TGAACGAATCTGCTGAAGGTAACTGGTAGACACAGCATGAGTGAGATTATTGTTAATATGATCATGAGAGCATGAAGATTGAAAGTTAGAGTCAATTTGTCGGAAATTCAGACATGGAAGGATTGATTTCGAATAGTTTGCTTCACAATACTCAGGAAATGGAGTAGATTGAAAGAACTGTGGATCAGATGTGGAACCGAATTTTGAAGGATATGACGTTCTCAGTGCAGGAGAACTTGACCATCGCTTAGTCTGATGAGAACTCGAGAAAAATGTACAAATCGTATACAAGCTTGATGAAGTTGTTTAATGGACTTCACAACTTGAGGATTTGCCTGATACTGCATACTTATTAGGCCTAAGAATATTTGATTGTTCAGTATATTGTCCACTTCTTTCTGGTTAATACGTACATTACTCTTCTCATCATGATCCAAGCTATCAGCGTTACTTTTGCAATGATCATCAGTTTCCGAAACAAAATTAGCATTTGGAA ATTCATTCAACATCAAACAGTTACTAGCATACTCACCAAAATTACTACTTATTCG                                                                                                                                                                                                               ]
[+] EMBL CD064445             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TGATCATCAGTTTCCGAAACAAAATTAGCACTGGGAACATTCATTCAACATCAAACAGTCACTAGCATACTCACCAAAATTACTACTTATTCGATTATGTTCAATTCGATGTTTTTTAGAAAACCTATCACTTTTCTTAGACGGTGAATGTTTTAAAAGTTTATCATTTGAATATGTCTCTTCCTTTTTATCACACCCTTCCTTTCTTCGATCGCGATGCTGCCAATATTTAGAGAATGAATTACAACTGAAGTTTTTCATATTCTTTATAAATTTTAGTCGATGATCATGTGGTCTGCT]




>consensus_5826#0
TGAACGAATCTGCTGAAGGTAACTGGTAGACACAGCATGAGTGAGATTATTGTTAATATG
ATCATGAGAGCATGAAGATTGAAAGTTAGAGTCAATTTGTCGGAAATTCAGACATGGAAG
GATTGATTTCGAATAGTTTGCTTCACAATACTCAGGAAATGGAGTAGATTGAAAGAACTG
TGGATCAGATGTGGAACCGAATTTTGAAGGATATGACGTTCTCAGTGCAGGAGAACTTGA
CCATCGCTTAGTCTGATGAGAACTCGAGAAAAATGTACAAATCGTATACAAGCTTGATGA
AGTTGTTTAATGGACTTCACAACTTGAGGATTTGCCTGATACTGCATACTTATTAGGCCT
AAGAATATTTGATTGTTCAGTATATTGTCCACTTCTTTCTGGTTAATACGTACATTACTC
TTCTCATCATGATCCAAGCTATCAGCGTTACTTTTGCAATGATCATCAGTTTCCGAAACA
AAATTAGCATTTGGAAATTCATTCAACATCAAACAGTTACTAGCATACTCACCAAAATTA
CTACTTATTCGATTATGTTCAATTCGATGTTTTTTAGAAAACCTATCACTTTTCTTAGAC
GGTGAATGTTTTAAAAGTTTATCATTTGAATATGTCTCTTCCTTTTTATCACACCCTTCC
TTTCTTCGATCGCGATGCTGCCAATATTTAGAGAATGAATTACAACTGAAGTTTTTCATA
TTCTTTATAAATTTTAGTCGATGATCATGTGGTCTGCT

consensusID : consensus_5826#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 704
fasta sequence

                              [GAATAGTTTGCTTCACAATACTCAGGAAATGGTGTAGATTGAAAGAACTGTGGACCAGATGTGGAACCGAATTTTGAAGGATATGGCGTTCTTAGTGCAGGAGAACTTGACCATCGCTTAGTCTGATGAGAACCATCAAAGTGTTTTCTTTCAGTGACGAACACATCAGTTCCAAATGAAAATTTATTACTTTTATGGAATTCTTTAGGAAGATCAACGGATTTGCGATTACTAACAGAATTAGGAGTCTTAAGCGATATATGACAGTTCCAACCACATTCTAAGCCCAAACGTTCAGCGAACACTCTACTTCGAAGTTCATTTTCTCGAGAAAAATGTACAAATCGTATACAAGCTTGATGAAGTTGTTTAATGGACTTCACAACTTGAGGATTTGCCTGATACTGCATACTTATTAGGCCTAAGAATATTTGATTGTTCAGTATATTGTCCACTTCTTTCTGGTTAATACGTACATTACTCTTCTCATCATGATCCAAGCTATCAGCGTTACTTTTGCAATGATCATCAGTTTCCGAAACAAATTAGCATTTGGAAATTCATTCAACATCAAACAGTTACTAGCATACTCACCAAAATACTACTTATTCGATTATGTTCAATTCGATGTTTTTTTAGAAACCTTATCCTTTTCTTAAAGGTGAATGGTTTAAAAGTTTATCATTGGAAATGGCTCCTTCTTT]

[+] EMBL CD178218             [GAATAGTTTGCTTCACAATACTCAGGAAATGGTGTAGATTGAAAGAACTGTGGACCAGATGTGGAACCGAATTTTGAAGGATATGGCGTTCTTAGTGCAGGAGAACTTGACCATCGCTTAGTCTGATGAGAACCATCAAAGTGTTTTCTTTCAGTGACGAACACATCAGTTCCAAATGAAAATTTATTACTTTTATGGAATTCTTTAGGAAGATCAACGGATTTGCGATTACTAACAGAATTAGGAGTCTTAAGCGATATATGACAGTTCCAACCACATTCTAAGCCCAAACGTTCAGCGAACACTCTACTTCGAAGTTCATTTTCTCGAGAAAAATGTACAAATCGTATACAAGCTTGATGAAGTTGTTTAATGGACTTCACAACTTGAGGATTTGCCTGATACTGCATACTTATTAGGCCTAAGAATATTTGATTGTTCAGTATATTGTCCACTTCTTTCTGGTTAATACGTACATTACTCTTCTCATCATGATCCAAGCTATCAGCGTTACTTTTGCAATGATCATCAGTTTCCGAAACAAATTAGCATTTGGAAATTCATTCAACATCAAACAGTTACTAGCATACTCACCAAAATACTACTTATTCGATTATGTTCAATTCGATGTTTTTTTAGAAACCTTATCCTTTTCTTAAAGGTGAATGGTTTAAAAGTTTATCATTGGAAATGGCTCCTTCTTT]




>consensus_5826#1
GAATAGTTTGCTTCACAATACTCAGGAAATGGTGTAGATTGAAAGAACTGTGGACCAGAT
GTGGAACCGAATTTTGAAGGATATGGCGTTCTTAGTGCAGGAGAACTTGACCATCGCTTA
GTCTGATGAGAACCATCAAAGTGTTTTCTTTCAGTGACGAACACATCAGTTCCAAATGAA
AATTTATTACTTTTATGGAATTCTTTAGGAAGATCAACGGATTTGCGATTACTAACAGAA
TTAGGAGTCTTAAGCGATATATGACAGTTCCAACCACATTCTAAGCCCAAACGTTCAGCG
AACACTCTACTTCGAAGTTCATTTTCTCGAGAAAAATGTACAAATCGTATACAAGCTTGA
TGAAGTTGTTTAATGGACTTCACAACTTGAGGATTTGCCTGATACTGCATACTTATTAGG
CCTAAGAATATTTGATTGTTCAGTATATTGTCCACTTCTTTCTGGTTAATACGTACATTA
CTCTTCTCATCATGATCCAAGCTATCAGCGTTACTTTTGCAATGATCATCAGTTTCCGAA
ACAAATTAGCATTTGGAAATTCATTCAACATCAAACAGTTACTAGCATACTCACCAAAAT
ACTACTTATTCGATTATGTTCAATTCGATGTTTTTTTAGAAACCTTATCCTTTTCTTAAA
GGTGAATGGTTTAAAAGTTTATCATTGGAAATGGCTCCTTCTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5826#0      -----------------------------------TGAACGAATCTGCTGAAGGTAACTG 25
consensus_5826#1      GAATAGTTTGCTTCACAATACTCAGGAAATGGTGTAGATTGAAAGAACTGTGGACCAGAT 60
                                                          **  ***    ***  *   *   

consensus_5826#0      GTAGACACAGCATGAGTGAGATTATTGTTAATATGAT-CATGAGAGCATGAAGATTGAA- 83
consensus_5826#1      GTGGA-ACCGAATTTTGAAGGATATGGCGTTCTTAGTGCAGGAGAACTTGACCATCGCTT 119
                      ** ** ** * **     **  *** *      *  * ** **** * ***  ** *   

consensus_5826#0      AGTTAGAGTCAATTTGTCGGAAA-------TTCAGACATGGAAGGATTGATTTCGAATAG 136
consensus_5826#1      AGTCTGATGAGAACCATCAAAGTGTTTTCTTTCAGTGACGAACACATCAGTTCCAAATGA 179
                      ***  **    *    **  *         *****  * * *   **   ** * ***  

consensus_5826#0      TTTGCTTCACAATACTCAGGAAATG----GAGTAGATTGAAAGAACTGTGGATCAGATGT 192
consensus_5826#1      --AAATTTATTACTTTTATGGAATTCTTTAGGAAGATCAACGGATTTGCG-ATTACTAAC 236
                           ** *  *   * * * ***       * ****  *  **  ** * ** *     

consensus_5826#0      GGAACC--GAATTTTGAAGGATAT--GACGTTCTCAG------TGCAGGAGAACTTGACC 242
consensus_5826#1      AGAATTAGGAGTCTTAAGCGATATATGACAGTTCCAACCACATTCTAAGCCCAAACGTTC 296
                       ***    ** * ** *  *****  ***  *  **       *  * *   *   *  *

consensus_5826#0      ATCGCTTAGTCTGATGAGAA---------CTCGAGAAAAATGTACAAATCGTATACAAGC 293
consensus_5826#1      AGCGAACACTCTACTTCGAAGTTCATTTTCTCGAGAAAAATGTACAAATCGTATACAAGC 356
                      * **   * ***  *  ***         *******************************

consensus_5826#0      TTGATGAAGTTGTTTAATGGACTTCACAACTTGAGGATTTGCCTGATACTGCATACTTAT 353
consensus_5826#1      TTGATGAAGTTGTTTAATGGACTTCACAACTTGAGGATTTGCCTGATACTGCATACTTAT 416
                      ************************************************************

consensus_5826#0      TAGGCCTAAGAATATTTGATTGTTCAGTATATTGTCCACTTCTTTCTGGTTAATACGTAC 413
consensus_5826#1      TAGGCCTAAGAATATTTGATTGTTCAGTATATTGTCCACTTCTTTCTGGTTAATACGTAC 476
                      ************************************************************

consensus_5826#0      ATTACTCTTCTCATCATGATCCAAGCTATCAGCGTTACTTTTGCAATGATCATCAGTTTC 473
consensus_5826#1      ATTACTCTTCTCATCATGATCCAAGCTATCAGCGTTACTTTTGCAATGATCATCAGTTTC 536
                      ************************************************************

consensus_5826#0      CGAAACAAAATTAGCATTTGGAAATTCATTCAACATCAAACAGTTACTAGCATACTCACC 533
consensus_5826#1      CGAAACAAA-TTAGCATTTGGAAATTCATTCAACATCAAACAGTTACTAGCATACTCACC 595
                      ********* **************************************************

consensus_5826#0      AAAATTACTACTTATTCGATTATGTTCAATTCGATGTTTTTTAGAAAACCTATCACTTTT 593
consensus_5826#1      AAAAT-ACTACTTATTCGATTATGTTCAATTCGATGTTTTTTTAGAAACCTTATCCTTTT 654
                      ***** ************************************   ******    *****

consensus_5826#0      CTTAGACGGTGAATGTTTTAAAAGTTTATCATTTGAATATGTCTCTTCCTTTTTATCACA 653
consensus_5826#1      CTTAAA-GGTGAATGGTTTAAAAGTTTATCATTGGAA-ATGGCTCCTTCTTT-------- 704
                      **** * ******** ***************** *** *** *** * ****        

consensus_5826#0      CCCTTCCTTTCTTCGATCGCGATGCTGCCAATATTTAGAGAATGAATTACAACTGAAGTT 713
consensus_5826#1      ------------------------------------------------------------
                                                                                  

consensus_5826#0      TTTCATATTCTTTATAAATTTTAGTCGATGATCATGTGGTCTGCT 758
consensus_5826#1      ---------------------------------------------