These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5840#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 599 fasta sequence [CGACAAAATGTCAGGTTTGATGCATATGGAGACAGAGGGGACACGAATAAAGAAAAATGTTCACATGCGTTTGCAAAAGTCGTCAGTACGGAAAGATTATTGAAGAGAGGTAATTTTGCAAAGGGAAATGTAGTTTTGACGTTAGAAATTAAAAAGCTAGCTAACTTCTGGTATTATAGTATGAGAGAGGATTAGCTAGCTTTTTAAGGCTGAACGTAAAACTATAATTTGACCAGGTGGTTGAATCCATGGTTCACCATCAACTTGAACTGGGATATCACATTTCACTGTAATTCTTATATGACCACCTTGTGCTAAACGAATACCAGTTCGTAAACCAGAAAATATTTGTCCCATATGTACTACACCAGTAACACCAACAATTTCAAGTTGACCATCAAAATGTGTTGGAGTTGTAAATGCATCATCTTTTTCAACACCCCATGGATTTGCACCAGCACCCCATGATAAAATATTTAATATAATTACACCTTCTAATGGTGGTAAATCTAATTGACGACCATCTACTTCAACAATAATATTTTGATGTANATCTTTACATTTTGTACGATTAACCATTNTACGCANACCCATTTTTT] [+] EMBL CD095690 [CGACAAAATGTCAGGTTTGATGCATATGGAGACAGAGGGGACACGAATAAAGAAAAATGTTCACATGCGTTTGCAAAAGTCGTCAGTACGGAAAGATTATTGAAGAGAGGTAATTTTGCAAAGGGAAATGTAGTTTTGACGTTAGAAATTAAAAAGCTAGCTAACTTCTGGTATTATAGTATGAGAGAGGATTAGCTAGCTTTTTAAGGCTGAACGTAAAACTATAATTTGACCAGGTGGTTGAATCCATGGTTCACCATCAACTTGAACTGGGATATCACATTTCACTGTAATTCTTATATGACCACCTTGTGCTAAACGAATACCAGTTCGTAAACCAGAAAATATTTGTCCCATATGTACTACACCAGTAACACCAACAATTTCAAGTTGACCATCAAAATGTGTTGGAGTTGTAAATGCATCATCTTTTTCAACACCCCATGGATTTGCACCAGCACCCCATGATAAAATATTTAATATAATTACACCTTCTAATGGTGGTAAATCTAATTGACGACCATCTACTTCAACAATAATATTTTGATGTANATCTTTACATTTTGTACGATTAACCATTNTACGCANACCCATTTTTT] [+] EMBL CD095627 [CGACAAAATGTCAGGTTTGATGCATATGGAGACAGAGGGGACACGAATAAAGAAAAATGTTCACATGCGTTTGCAAAAGTCGTCAGTACGGAAAGATTATTGAAGAGAGGTAATTTTGCAAAGGGAAATGTAGTTTTGACGTTAGAAATTAAAAAGCTAGCTAACTTCTGGTATTATAGTATGAGAGAGGATTAGCTAGCTTTTTAAGGCTGAACGTAAAACTATAATTTGACCAGGTGGTTGAATCCATGGTTCACCATCAACTTGAACTGGGATATCACATTTCACTGTAATTCTTATATGACCACCTTGTGCTAAACGAATACCAGTTCGTAAACCAGAAAATATTTGTCCCATATGTACTACACCAGTAACACCAACAATTTCAAGTTGACCATCAAAATGTGTTGGAGTTGTAAATGCATCATCTTTTTCAACACCCCATGGATTTGCACCAGCACCCCATGATAAAATATTTAATATAATTACACCTTCTAATGGTGGTAAATCTAATTGACGACCATCTACTTCAACAATAATATTTTGATGTAAATCTTTACATTTTGTACGATTAACCATTTTACGCAAACCC ] consensusID : consensus_5840#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence [TATGAAAATCTAAATTTAAATCAGCATCTATACCTAAACCAAAATAATTATTCATAACAAATATCCGACTAGAATCTTCATTTGTATTTGATGAATTAGCTTCAATTTGTAATTGTTTCTTTTGTGCATCTTTTTCAGCTTGATCTGGTTTAATTACAACAGTCCAACGATCTAAACGAATATTTTCCGCCTCAACAACATCTTTCAGTATAGTTAAAGGCTCTTCACCACCAGTATAACCGGAACCCCAGCGTAAAACTCGTGCCAAGTCATTGCCAGTACCCAGTGGTAGAATTGCCATAGGCGGTGTAGGACATGCAGCATCTTGACCAACGTTATCTAAACATGAAAGTGCCCATCCAAATGGGATATCACATTTCACTGTAATTATTATATGACCACCTTGTGTTAAACGAATACCAGTTTGTAAACCAGAAAATATTTGTCCCATATGTAATACACCAGTAACACCAACAATTTCAAGTTGACCATCAAAATGTGTTGGAGTTGTAAATGCATCATATTTTTCAACACCCCATG] [-] EMBL CD194795 [TATGAAAATCTAAATTTAAATCAGCATCTATACCTAAACCAAAATAATTATTCATAACAAATATCCGACTAGAATCTTCATTTGTATTTGATGAATTAGCTTCAATTTGTAATTGTTTCTTTTGTGCATCTTTTTCAGCTTGATCTGGTTTAATTACAACAGTCCAACGATCTAAACGAATATTTTCCGCCTCAACAACATCTTTCAGTATAGTTAAAGGCTCTTCACCACCAGTATAACCGGAACCCCAGCGTAAAACTCGTGCCAAGTCATTGCCAGTACCCAGTGGTAGAATTGCCATAGGCGGTGTAGGACATGCAGCATCTTGACCAACGTTATCTAAACATGAAAGTGCCCATCCAAATGGGATATCACATTTCACTGTAATTATTATATGACCACCTTGTGTTAAACGAATACCAGTTTGTAAACCAGAAAATATTTGTCCCATATGTAATACACCAGTAACACCAACAATTTCAAGTTGACCATCAAAATGTGTTGGAGTTGTAAATGCATCATATTTTTCAACACCCCATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5840#0 ------------------------------------------------------------ consensus_5840#1 TATGAAAATCTAAATTTAAATCAGCATCTATACCTAAACCAAAATAATTATTCATAACAA 60 consensus_5840#0 -------------------------CGACAAAATGTCAGGTTTGATGCATATGGAGACAG 35 consensus_5840#1 ATATCCGACTAGAATCTTCATTTGTATTTGATGAATTAGCTTCAATTTGTAATTGTTTCT 120 * * ** ** ** ** consensus_5840#0 AGGGGACACGAATAAAGAAAAATGTTCACATGCGTTTGCAAAAGTCGTCAGTACGGAAAG 95 consensus_5840#1 TTTGTGCAT--CTTTTTCAGCTTGATCTGGTTTAATTACAACAGTCCAACGATCTAAACG 178 * ** * * ** ** * ** *** **** * * ** * consensus_5840#0 ATTATTGA-------AGAGAGGTAATTTTGCAAAGGGAAATGTAGTTTTGACGTTAGAA- 147 consensus_5840#1 AATATTTTCCGCCTCAACAACATCTTTCAGTATAGTTAAAGGCT-CTTCACCACCAGTAT 237 * **** * * * ** * * ** *** * ** * ** * consensus_5840#0 -ATTAAAAAGCTAGCT---AACTTCTGGTATTATAGTATGAGAGAGGATTAGCTAGCTTT 203 consensus_5840#1 AACCGGAACCCCAGCGTAAAACTCGTGCCAAGTCATTGCCAGTACCCAGTGGTAGAATTG 297 * ** * *** **** ** * * * ** * * * ** consensus_5840#0 TTA-AGGC--TGAACGTAAAACTATAATTTGACCAG-GTGGTTGAATCCATGGTTCACCA 259 consensus_5840#1 CCATAGGCGGTGTAGGACATGCAGCATCTTGACCAACGTTATCTAAAC-ATGAA--AGTG 354 * **** ** * * * * * ******* ** * ** * *** * consensus_5840#0 TCAACTTGAACTGGGATATCACATTTCACTGTAATTCTTATATGACCACCTTGTGCTAAA 319 consensus_5840#1 CCCATCCAAA-TGGGATATCACATTTCACTGTAATTATTATATGACCACCTTGTGTTAAA 413 * * ** ************************* ****************** **** consensus_5840#0 CGAATACCAGTTCGTAAACCAGAAAATATTTGTCCCATATGTACTACACCAGTAACACCA 379 consensus_5840#1 CGAATACCAGTTTGTAAACCAGAAAATATTTGTCCCATATGTAATACACCAGTAACACCA 473 ************ ****************************** **************** consensus_5840#0 ACAATTTCAAGTTGACCATCAAAATGTGTTGGAGTTGTAAATGCATCATCTTTTTCAACA 439 consensus_5840#1 ACAATTTCAAGTTGACCATCAAAATGTGTTGGAGTTGTAAATGCATCATATTTTTCAACA 533 ************************************************* ********** consensus_5840#0 CCCCATGGATTTGCACCAGCACCCCATGATAAAATATTTAATATAATTACACCTTCTAAT 499 consensus_5840#1 CCCCATG----------------------------------------------------- 540 ******* consensus_5840#0 GGTGGTAAATCTAATTGACGACCATCTACTTCAACAATAATATTTTGATGTANATCTTTA 559 consensus_5840#1 ------------------------------------------------------------ consensus_5840#0 CATTTTGTACGATTAACCATTNTACGCANACCCATTTTTT 599 consensus_5840#1 ---------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||