cluster # 5846

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Schistosoma mansoni
cluster # 5846 cluster # 5846 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5846#0 length = 564 sequences # 2

consensus_5846#1 length = 133 sequences # 1

consensusID : consensus_5846#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 564
fasta sequence

                              [AATCATTCATTTTTGCTACATATTTATGTATTATATATTGTTAAGAGGATTATATGAGACTTTTACTCTCTCTCTCTCTGTTCGTATTCTTTCATCAGCCATAATTGCCATGCTCCATTGTCCATTACACACATATATTATATTCAATGAACCAACCTATTTTGTTTAAATATGATCACACAAATAAGAGGAATTTTCAAAATATGTATTTTTTTCTATCGTTTTGTAATCTACTAATTGGGTATTGTTATATAAGGGTAGATTGATTTACTTGTATATTCTACTTATTTTTCTATTATTTTATTCAGACTTCATATGTGTGTGTGTGCTTGTGTTTTACTTATTATTGTTTACATGTGTTTTTGTGTATTGGAATCATGTGGAAACACTACGGAAACATGTGCATATTTCATTGTATTTTCTTTTACATGAAGAATAAGATGTGTGTCTGCACGTTTTCATCTCATTCAAATGCATGTTGTTTGTACGTGTGTGTGTGTGTATGTGTACGTTTTGTAAAGTCGACATGTAACTCTTTTACCTCTTGGTCCCGCCACCGGTTGA]

[+] EMBL CD083952             [AATCATTCATTTTTGCTACATATTTATGTATTATATATTGTTAAGAGGATTATATGAGACTTTTACTCTCTCTCTCTCTGTTCGTATTCTTTCATCAGCCATAATTGCCATGCTCCATTGTCCATTACACACATATATTATATTCAATGAACCAACCTATTTTGTTTAAATATGATCACACAAATAAGAGGAATTTTCAAAATATGTATTTTTTTCTATCGTTTTGTAATCTACTAATTGGGTATTGTTATATAAGGGTAGATTGATTTACTTGTATATTCTACTTATTTTTCTATTATTTTATTCAGACTTCATATGTGTGTGTGTGCTTGTGTTTTACTTATTATTGTTTACATGTGTTTTTGTGTATTGGAATCATGTGGAAACACTACGGAAACATGTGCATATTTCATTGTATTT                                                                                                                                                ]
[-] EMBL CD076729             [                                                                                                                                                                           ATGATCACACAAATAAGAGGAATTTTCAAAATATGTATTTTTTTCTATCGTTTTGTAATCTACTAATTGGGTATTGTTATATAAGGGTAGATTGATTTACTTGTATATTCTACTTATTTTTCTATTATTTTATTCAGACTTCATATGTGTGTGTGTGCTTGTGTTTTACTTATTATTGTTTACATGTGTTTTTGTGTATTGGAATCATGTGGAAACACTACGGAAACATGTGCATATTTCATTGTATTTTCTTTTACATGAAGAATAAGATGTGTGTCTGCACGTTTTCATCTCATTCAAATGCATGTTGTTTGTACGTGTGTGTGTGTGTATGTGTACGTTTTGTAAAGTCGACATGTAACTCTTTTACCTCTTGGTCCCGCCACCGGTTGA]




>consensus_5846#0
AATCATTCATTTTTGCTACATATTTATGTATTATATATTGTTAAGAGGATTATATGAGAC
TTTTACTCTCTCTCTCTCTGTTCGTATTCTTTCATCAGCCATAATTGCCATGCTCCATTG
TCCATTACACACATATATTATATTCAATGAACCAACCTATTTTGTTTAAATATGATCACA
CAAATAAGAGGAATTTTCAAAATATGTATTTTTTTCTATCGTTTTGTAATCTACTAATTG
GGTATTGTTATATAAGGGTAGATTGATTTACTTGTATATTCTACTTATTTTTCTATTATT
TTATTCAGACTTCATATGTGTGTGTGTGCTTGTGTTTTACTTATTATTGTTTACATGTGT
TTTTGTGTATTGGAATCATGTGGAAACACTACGGAAACATGTGCATATTTCATTGTATTT
TCTTTTACATGAAGAATAAGATGTGTGTCTGCACGTTTTCATCTCATTCAAATGCATGTT
GTTTGTACGTGTGTGTGTGTGTATGTGTACGTTTTGTAAAGTCGACATGTAACTCTTTTA
CCTCTTGGTCCCGCCACCGGTTGA

consensusID : consensus_5846#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 133
fasta sequence

                              [GCCATAATTGCCATGCTCCATTGTCAAAATCACACATATATATATGATATGAACCAACCTATTTTGTTTAAATATGATCACACAAATAAGAGGAATTTTCAAAATATGTAGGGGATCTACCGTTGGTAATCAC]

[+] EMBL AA801604             [GCCATAATTGCCATGCTCCATTGTCAAAATCACACATATATATATGATATGAACCAACCTATTTTGTTTAAATATGATCACACAAATAAGAGGAATTTTCAAAATATGTAGGGGATCTACCGTTGGTAATCAC]




>consensus_5846#1
GCCATAATTGCCATGCTCCATTGTCAAAATCACACATATATATATGATATGAACCAACCT
ATTTTGTTTAAATATGATCACACAAATAAGAGGAATTTTCAAAATATGTAGGGGATCTAC
CGTTGGTAATCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5846#0      AATCATTCATTTTTGCTACATATTTATGTATTATATATTGTTAAGAGGATTATATGAGAC 60
consensus_5846#1      ------------------------------------------------------------
                                                                                  

consensus_5846#0      TTTTACTCTCTCTCTCTCTGTTCGTATTCTTTCATCAGCCATAATTGCCATGCTCCATTG 120
consensus_5846#1      -------------------------------------GCCATAATTGCCATGCTCCATTG 23
                                                           ***********************

consensus_5846#0      TCCATTACACACATATATTATATTCAATGAACCAACCTATTTTGTTTAAATATGATCACA 180
consensus_5846#1      TCAAAATCACACATATAT-ATATGATATGAACCAACCTATTTTGTTTAAATATGATCACA 82
                      ** *   *********** ****   **********************************

consensus_5846#0      CAAATAAGAGGAATTTTCAAAATATGTATTTTTTTCTATCGTTTTGTAATCTACTAATTG 240
consensus_5846#1      CAAATAAGAGGAATTTTCAAAATATGTAGGGGAT-CTACCGTTG-GTAATC-AC------ 133
                      ****************************     * *** ****  ****** **      

consensus_5846#0      GGTATTGTTATATAAGGGTAGATTGATTTACTTGTATATTCTACTTATTTTTCTATTATT 300
consensus_5846#1      ------------------------------------------------------------
                                                                                  

consensus_5846#0      TTATTCAGACTTCATATGTGTGTGTGTGCTTGTGTTTTACTTATTATTGTTTACATGTGT 360
consensus_5846#1      ------------------------------------------------------------
                                                                                  

consensus_5846#0      TTTTGTGTATTGGAATCATGTGGAAACACTACGGAAACATGTGCATATTTCATTGTATTT 420
consensus_5846#1      ------------------------------------------------------------
                                                                                  

consensus_5846#0      TCTTTTACATGAAGAATAAGATGTGTGTCTGCACGTTTTCATCTCATTCAAATGCATGTT 480
consensus_5846#1      ------------------------------------------------------------
                                                                                  

consensus_5846#0      GTTTGTACGTGTGTGTGTGTGTATGTGTACGTTTTGTAAAGTCGACATGTAACTCTTTTA 540
consensus_5846#1      ------------------------------------------------------------
                                                                                  

consensus_5846#0      CCTCTTGGTCCCGCCACCGGTTGA 564
consensus_5846#1      ------------------------